data_8YP5 # _model_server_result.job_id vbHULLJe-XhZL3lnuavyfA _model_server_result.datetime_utc '2025-08-04 15:39:50' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 8yp5 # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"B","auth_seq_id":501}' # _entry.id 8YP5 # _exptl.entry_id 8YP5 _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 362.374 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description (3S,5Z,8S,9S,11E)-8,9,16-trihydroxy-14-methoxy-3-methyl-3,4,9,10-tetrahydro-1H-2-benzoxacyclotetradecine-1,7(8H)-dione _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 8YP5 _cell.length_a 68.81 _cell.length_b 118.032 _cell.length_c 81.52 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? # _symmetry.entry_id 8YP5 _symmetry.cell_setting ? _symmetry.Int_Tables_number 20 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'C 2 2 21' # _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 2 _struct_asym.id B _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # _struct_conn.conn_type_id metalc _struct_conn.details ? _struct_conn.id metalc1 _struct_conn.ptnr1_label_asym_id B _struct_conn.ptnr1_label_atom_id O40 _struct_conn.ptnr1_label_comp_id 1FM _struct_conn.ptnr1_label_seq_id . _struct_conn.ptnr1_auth_asym_id A _struct_conn.ptnr1_auth_comp_id 1FM _struct_conn.ptnr1_auth_seq_id 501 _struct_conn.ptnr1_symmetry 1_555 _struct_conn.ptnr2_label_asym_id C _struct_conn.ptnr2_label_atom_id MG _struct_conn.ptnr2_label_comp_id MG _struct_conn.ptnr2_label_seq_id . _struct_conn.ptnr2_auth_asym_id A _struct_conn.ptnr2_auth_comp_id MG _struct_conn.ptnr2_auth_seq_id 502 _struct_conn.ptnr2_symmetry 1_555 _struct_conn.pdbx_ptnr1_PDB_ins_code ? _struct_conn.pdbx_ptnr1_label_alt_id ? _struct_conn.pdbx_ptnr1_standard_comp_id ? _struct_conn.pdbx_ptnr2_PDB_ins_code ? _struct_conn.pdbx_ptnr2_label_alt_id ? _struct_conn.pdbx_ptnr3_PDB_ins_code ? _struct_conn.pdbx_ptnr3_label_alt_id ? _struct_conn.pdbx_ptnr3_label_asym_id ? _struct_conn.pdbx_ptnr3_label_atom_id ? _struct_conn.pdbx_ptnr3_label_comp_id ? _struct_conn.pdbx_ptnr3_label_seq_id ? _struct_conn.pdbx_PDB_id ? _struct_conn.pdbx_dist_value 2.64 _struct_conn.pdbx_value_order ? # _chem_comp.formula 'C19 H22 O7' _chem_comp.formula_weight 362.374 _chem_comp.id 1FM _chem_comp.mon_nstd_flag . _chem_comp.name (3S,5Z,8S,9S,11E)-8,9,16-trihydroxy-14-methoxy-3-methyl-3,4,9,10-tetrahydro-1H-2-benzoxacyclotetradecine-1,7(8H)-dione _chem_comp.type non-polymer _chem_comp.pdbx_synonyms (5Z)-7-Oxozeaenol # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C3 C2 1FM doub 1 n y C2 C11 1FM sing 2 n y C2 C26 1FM sing 3 n n C23 C3 1FM sing 4 n n C14 C3 1FM sing 5 n y C16 C11 1FM doub 6 n y C11 O46 1FM sing 7 n n C14 C15 1FM doub 8 n y C14 H14 1FM sing 9 n n O48 C15 1FM sing 10 n n C15 C16 1FM sing 11 n y O15 C31 1FM sing 12 n n O15 C26 1FM sing 13 n n C16 H16 1FM sing 14 n n C34 C17 1FM sing 15 n n C17 C23 1FM doub 16 e n C17 H17 1FM sing 17 n n C42 C18 1FM sing 18 n n C18 C31 1FM sing 19 n n C18 H18 1FM sing 20 n n C18 H18A 1FM sing 21 n n C23 H23 1FM sing 22 n n O42 C24 1FM sing 23 n n C39 C24 1FM sing 24 n n C24 C34 1FM sing 25 n n C24 H24 1FM sing 26 n n C26 O38 1FM doub 27 n n C31 C62 1FM sing 28 n n C31 H31 1FM sing 29 n n C34 H34 1FM sing 30 n n C34 H34A 1FM sing 31 n n O44 C39 1FM sing 32 n n C39 C40 1FM sing 33 n n C39 H39 1FM sing 34 n n C41 C40 1FM sing 35 n n C40 O40 1FM doub 36 n n C41 C42 1FM doub 37 z n C41 H41 1FM sing 38 n n C42 H42 1FM sing 39 n n O42 HO42 1FM sing 40 n n O44 HO44 1FM sing 41 n n O46 HO46 1FM sing 42 n n C59 O48 1FM sing 43 n n C59 H59 1FM sing 44 n n C59 H59A 1FM sing 45 n n C59 H59B 1FM sing 46 n n C62 H62 1FM sing 47 n n C62 H62A 1FM sing 48 n n C62 H62B 1FM sing 49 n n # _atom_sites.entry_id 8YP5 _atom_sites.fract_transf_matrix[1][1] 0.014533 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.008472 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.012267 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 1FM A 1 501 401 1FM 1FM . C 3 MG A 1 502 1 MG MG . D 4 HOH A 1 601 70 HOH HOH . D 4 HOH A 2 602 76 HOH HOH . D 4 HOH A 3 603 137 HOH HOH . D 4 HOH A 4 604 100 HOH HOH . D 4 HOH A 5 605 81 HOH HOH . D 4 HOH A 6 606 69 HOH HOH . D 4 HOH A 7 607 60 HOH HOH . D 4 HOH A 8 608 55 HOH HOH . D 4 HOH A 9 609 95 HOH HOH . D 4 HOH A 10 610 87 HOH HOH . D 4 HOH A 11 611 115 HOH HOH . D 4 HOH A 12 612 106 HOH HOH . D 4 HOH A 13 613 2 HOH HOH . D 4 HOH A 14 614 49 HOH HOH . D 4 HOH A 15 615 15 HOH HOH . D 4 HOH A 16 616 117 HOH HOH . D 4 HOH A 17 617 7 HOH HOH . D 4 HOH A 18 618 116 HOH HOH . D 4 HOH A 19 619 110 HOH HOH . D 4 HOH A 20 620 1 HOH HOH . D 4 HOH A 21 621 114 HOH HOH . D 4 HOH A 22 622 5 HOH HOH . D 4 HOH A 23 623 3 HOH HOH . D 4 HOH A 24 624 73 HOH HOH . D 4 HOH A 25 625 94 HOH HOH . D 4 HOH A 26 626 109 HOH HOH . D 4 HOH A 27 627 13 HOH HOH . D 4 HOH A 28 628 93 HOH HOH . D 4 HOH A 29 629 50 HOH HOH . D 4 HOH A 30 630 19 HOH HOH . D 4 HOH A 31 631 98 HOH HOH . D 4 HOH A 32 632 41 HOH HOH . D 4 HOH A 33 633 59 HOH HOH . D 4 HOH A 34 634 66 HOH HOH . D 4 HOH A 35 635 102 HOH HOH . D 4 HOH A 36 636 78 HOH HOH . D 4 HOH A 37 637 91 HOH HOH . D 4 HOH A 38 638 24 HOH HOH . D 4 HOH A 39 639 108 HOH HOH . D 4 HOH A 40 640 56 HOH HOH . D 4 HOH A 41 641 77 HOH HOH . D 4 HOH A 42 642 112 HOH HOH . D 4 HOH A 43 643 26 HOH HOH . D 4 HOH A 44 644 74 HOH HOH . D 4 HOH A 45 645 35 HOH HOH . D 4 HOH A 46 646 4 HOH HOH . D 4 HOH A 47 647 53 HOH HOH . D 4 HOH A 48 648 11 HOH HOH . D 4 HOH A 49 649 36 HOH HOH . D 4 HOH A 50 650 126 HOH HOH . D 4 HOH A 51 651 125 HOH HOH . D 4 HOH A 52 652 61 HOH HOH . D 4 HOH A 53 653 92 HOH HOH . D 4 HOH A 54 654 8 HOH HOH . D 4 HOH A 55 655 138 HOH HOH . D 4 HOH A 56 656 68 HOH HOH . D 4 HOH A 57 657 123 HOH HOH . D 4 HOH A 58 658 124 HOH HOH . D 4 HOH A 59 659 120 HOH HOH . D 4 HOH A 60 660 14 HOH HOH . D 4 HOH A 61 661 119 HOH HOH . D 4 HOH A 62 662 58 HOH HOH . D 4 HOH A 63 663 72 HOH HOH . D 4 HOH A 64 664 127 HOH HOH . D 4 HOH A 65 665 97 HOH HOH . D 4 HOH A 66 666 107 HOH HOH . D 4 HOH A 67 667 18 HOH HOH . D 4 HOH A 68 668 86 HOH HOH . D 4 HOH A 69 669 111 HOH HOH . D 4 HOH A 70 670 38 HOH HOH . D 4 HOH A 71 671 80 HOH HOH . D 4 HOH A 72 672 105 HOH HOH . D 4 HOH A 73 673 99 HOH HOH . D 4 HOH A 74 674 89 HOH HOH . D 4 HOH A 75 675 6 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C2 1FM . . . B 2 -21.878 -10.405 9.736 1 53.24 ? C2 1FM 501 A 1 HETATM 2 C C3 1FM . . . B 2 -21.345 -10.519 11.051 1 56.22 ? C3 1FM 501 A 1 HETATM 3 C C11 1FM . . . B 2 -21.122 -9.698 8.768 1 62.99 ? C11 1FM 501 A 1 HETATM 4 C C14 1FM . . . B 2 -20.112 -9.939 11.331 1 48.87 ? C14 1FM 501 A 1 HETATM 5 C C15 1FM . . . B 2 -19.403 -9.258 10.358 1 54.9 ? C15 1FM 501 A 1 HETATM 6 O O15 1FM . . . B 2 -23.081 -12.12 8.641 1 60.18 ? O15 1FM 501 A 1 HETATM 7 C C16 1FM . . . B 2 -19.899 -9.132 9.076 1 58.87 ? C16 1FM 501 A 1 HETATM 8 C C17 1FM . . . B 2 -22.855 -12.268 12.057 1 67.69 ? C17 1FM 501 A 1 HETATM 9 C C18 1FM . . . B 2 -25.295 -13.041 8.84 1 71.05 ? C18 1FM 501 A 1 HETATM 10 C C23 1FM . . . B 2 -22.042 -11.231 12.148 1 74.36 ? C23 1FM 501 A 1 HETATM 11 C C24 1FM . . . B 2 -23.484 -14.644 12.34 1 56.95 ? C24 1FM 501 A 1 HETATM 12 C C26 1FM . . . B 2 -23.178 -10.962 9.288 1 57.91 ? C26 1FM 501 A 1 HETATM 13 C C31 1FM . . . B 2 -24.243 -12.57 7.852 1 66.39 ? C31 1FM 501 A 1 HETATM 14 C C34 1FM . . . B 2 -22.453 -13.681 11.778 1 64.77 ? C34 1FM 501 A 1 HETATM 15 O O38 1FM . . . B 2 -24.228 -10.415 9.5 1 65.8 ? O38 1FM 501 A 1 HETATM 16 C C39 1FM . . . B 2 -24.872 -14.238 11.85 1 61.18 ? C39 1FM 501 A 1 HETATM 17 C C40 1FM . . . B 2 -25.562 -15.372 11.139 1 68.3 ? C40 1FM 501 A 1 HETATM 18 O O40 1FM . . . B 2 -25.628 -16.457 11.708 1 40.59 ? O40 1FM 501 A 1 HETATM 19 C C41 1FM . . . B 2 -26.125 -15.211 9.787 1 76.32 ? C41 1FM 501 A 1 HETATM 20 C C42 1FM . . . B 2 -25.535 -14.52 8.834 1 73.94 ? C42 1FM 501 A 1 HETATM 21 O O42 1FM . . . B 2 -23.18 -15.976 11.904 1 50.97 ? O42 1FM 501 A 1 HETATM 22 O O44 1FM . . . B 2 -25.636 -13.774 12.954 1 49.45 ? O44 1FM 501 A 1 HETATM 23 O O46 1FM . . . B 2 -21.623 -9.579 7.497 1 75.67 ? O46 1FM 501 A 1 HETATM 24 O O48 1FM . . . B 2 -18.193 -8.697 10.656 1 47.21 ? O48 1FM 501 A 1 HETATM 25 C C59 1FM . . . B 2 -17.726 -8.817 11.994 1 53.59 ? C59 1FM 501 A 1 HETATM 26 C C62 1FM . . . B 2 -23.798 -13.652 6.897 1 66.4 ? C62 1FM 501 A 1 # _model_server_stats.io_time_ms 9 _model_server_stats.parse_time_ms 11 _model_server_stats.create_model_time_ms 13 _model_server_stats.query_time_ms 350 _model_server_stats.encode_time_ms 4 _model_server_stats.element_count 26 #