data_8YPJ # _model_server_result.job_id QjCI3QvkJx7pHlyR9ZZFNw _model_server_result.datetime_utc '2024-11-12 20:41:15' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 8ypj # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"C","auth_seq_id":101}' # _entry.id 8YPJ # _exptl.entry_id 8YPJ _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 94.971 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'PHOSPHATE ION' _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 8YPJ _cell.length_a 99.37 _cell.length_b 99.37 _cell.length_c 99.37 _cell.Z_PDB 48 _cell.pdbx_unique_axis ? # _symmetry.entry_id 8YPJ _symmetry.cell_setting ? _symmetry.Int_Tables_number 197 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'I 2 3' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 2 _struct_asym.id C _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # _chem_comp.formula 'O4 P -3' _chem_comp.formula_weight 94.971 _chem_comp.id PO4 _chem_comp.mon_nstd_flag . _chem_comp.name 'PHOSPHATE ION' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag P O1 PO4 doub 224 n n P O2 PO4 sing 225 n n P O3 PO4 sing 226 n n P O4 PO4 sing 227 n n # _atom_sites.entry_id 8YPJ _atom_sites.fract_transf_matrix[1][1] 0.010063 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.010063 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.010063 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 2 PO4 B 1 101 1 PO4 PO4 . D 3 HOH A 1 101 28 HOH HOH . D 3 HOH A 2 102 20 HOH HOH . D 3 HOH A 3 103 36 HOH HOH . D 3 HOH A 4 104 26 HOH HOH . D 3 HOH A 5 105 4 HOH HOH . D 3 HOH A 6 106 42 HOH HOH . D 3 HOH A 7 107 22 HOH HOH . D 3 HOH A 8 108 19 HOH HOH . D 3 HOH A 9 109 54 HOH HOH . D 3 HOH A 10 110 15 HOH HOH . D 3 HOH A 11 111 11 HOH HOH . D 3 HOH A 12 112 7 HOH HOH . D 3 HOH A 13 113 13 HOH HOH . D 3 HOH A 14 114 17 HOH HOH . D 3 HOH A 15 115 9 HOH HOH . D 3 HOH A 16 116 70 HOH HOH . D 3 HOH A 17 117 58 HOH HOH . D 3 HOH A 18 118 43 HOH HOH . D 3 HOH A 19 119 29 HOH HOH . D 3 HOH A 20 120 69 HOH HOH . D 3 HOH A 21 121 5 HOH HOH . D 3 HOH A 22 122 34 HOH HOH . D 3 HOH A 23 123 39 HOH HOH . D 3 HOH A 24 124 64 HOH HOH . D 3 HOH A 25 125 47 HOH HOH . D 3 HOH A 26 126 49 HOH HOH . E 3 HOH B 1 201 24 HOH HOH . E 3 HOH B 2 202 25 HOH HOH . E 3 HOH B 3 203 38 HOH HOH . E 3 HOH B 4 204 14 HOH HOH . E 3 HOH B 5 205 23 HOH HOH . E 3 HOH B 6 206 68 HOH HOH . E 3 HOH B 7 207 50 HOH HOH . E 3 HOH B 8 208 41 HOH HOH . E 3 HOH B 9 209 31 HOH HOH . E 3 HOH B 10 210 12 HOH HOH . E 3 HOH B 11 211 35 HOH HOH . E 3 HOH B 12 212 33 HOH HOH . E 3 HOH B 13 213 10 HOH HOH . E 3 HOH B 14 214 52 HOH HOH . E 3 HOH B 15 215 40 HOH HOH . E 3 HOH B 16 216 21 HOH HOH . E 3 HOH B 17 217 16 HOH HOH . E 3 HOH B 18 218 18 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 P P PO4 . . . C 2 -11.301 -42.346 -27.508 1 63.99 ? P PO4 101 B 1 HETATM 2 O O1 PO4 . . . C 2 -12.119 -41.672 -28.584 1 79.68 ? O1 PO4 101 B 1 HETATM 3 O O2 PO4 . . . C 2 -9.863 -41.886 -27.594 1 72.22 ? O2 PO4 101 B 1 HETATM 4 O O3 PO4 . . . C 2 -11.368 -43.847 -27.681 1 75.33 ? O3 PO4 101 B 1 HETATM 5 O O4 PO4 . . . C 2 -11.86 -41.99 -26.154 1 64.33 ? O4 PO4 101 B 1 # _model_server_stats.io_time_ms 12 _model_server_stats.parse_time_ms 9 _model_server_stats.create_model_time_ms 1 _model_server_stats.query_time_ms 268 _model_server_stats.encode_time_ms 1 _model_server_stats.element_count 5 #