data_8YPK # _model_server_result.job_id oJRcWOQDa0lCyW_EKSJH7g _model_server_result.datetime_utc '2024-10-11 20:33:30' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 8ypk # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"DA","auth_seq_id":301}' # _entry.id 8YPK # _exptl.entry_id 8YPK _exptl.method 'ELECTRON MICROSCOPY' # _entity.details ? _entity.formula_weight 308.184 _entity.id 15 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description '[(1R)-1-[(1-cyclohexyl-1,2,3-triazol-4-yl)carbonylamino]-3-methyl-butyl]boronic acid' _entity.pdbx_number_of_molecules 4 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 8YPK _cell.length_a 1 _cell.length_b 1 _cell.length_c 1 _cell.Z_PDB ? _cell.pdbx_unique_axis ? # _symmetry.entry_id 8YPK _symmetry.cell_setting ? _symmetry.Int_Tables_number 1 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 1' # _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details 28-meric _pdbx_struct_assembly.oligomeric_count 28 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J,K,L,M,N,O,P,Q,R,S,T,U,V,W,X,Y,Z,AA,BA,CA,DA,EA,FA _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 15 CA N N ? 15 DA N N ? 15 EA N N ? 15 FA N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order covale ? covale1 A OG1 THR 1 A THR 2 1_555 CA B1 A1L0C . A A1L0C 301 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.359 ? covale ? covale2 G OG1 THR 1 D THR 2 1_555 DA B1 A1L0C . D A1L0C 301 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.359 ? covale ? covale3 N OG1 THR 1 C THR 2 1_555 EA B1 A1L0C . C A1L0C 301 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.359 ? covale ? covale4 X OG1 THR 1 F THR 2 1_555 FA B1 A1L0C . F A1L0C 301 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.359 ? # _chem_comp.formula 'C14 H25 B N4 O3' _chem_comp.formula_weight 308.184 _chem_comp.id A1L0C _chem_comp.mon_nstd_flag . _chem_comp.name '[(1R)-1-[(1-cyclohexyl-1,2,3-triazol-4-yl)carbonylamino]-3-methyl-butyl]boronic acid' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag O2 B1 A1L0C sing 1 n n B1 O1 A1L0C sing 2 n n B1 C4 A1L0C sing 3 n n C5 C4 A1L0C sing 4 n n C5 C6 A1L0C sing 5 n n C8 C6 A1L0C sing 6 n n C4 N4 A1L0C sing 7 n n C6 C7 A1L0C sing 8 n n N4 C3 A1L0C sing 9 n n O3 C3 A1L0C doub 10 n n C3 C1 A1L0C sing 11 n n C1 N3 A1L0C sing 12 n y C1 C2 A1L0C doub 13 n y N3 N2 A1L0C doub 14 n y C2 N1 A1L0C sing 15 n y N2 N1 A1L0C sing 16 n y N1 C9 A1L0C sing 17 n n C9 C10 A1L0C sing 18 n n C9 C14 A1L0C sing 19 n n C10 C11 A1L0C sing 20 n n C14 C13 A1L0C sing 21 n n C11 C12 A1L0C sing 22 n n C13 C12 A1L0C sing 23 n n C10 H1 A1L0C sing 24 n n C10 H2 A1L0C sing 25 n n C11 H3 A1L0C sing 26 n n C11 H4 A1L0C sing 27 n n C12 H5 A1L0C sing 28 n n C12 H6 A1L0C sing 29 n n C13 H7 A1L0C sing 30 n n C13 H8 A1L0C sing 31 n n C14 H9 A1L0C sing 32 n n C14 H10 A1L0C sing 33 n n C2 H11 A1L0C sing 34 n n C4 H12 A1L0C sing 35 n n C5 H13 A1L0C sing 36 n n C5 H14 A1L0C sing 37 n n C6 H15 A1L0C sing 38 n n C7 H16 A1L0C sing 39 n n C7 H17 A1L0C sing 40 n n C7 H18 A1L0C sing 41 n n C8 H19 A1L0C sing 42 n n C8 H20 A1L0C sing 43 n n C8 H21 A1L0C sing 44 n n C9 H22 A1L0C sing 45 n n N4 H23 A1L0C sing 46 n n O1 H24 A1L0C sing 47 n n O2 H25 A1L0C sing 48 n n # _atom_sites.entry_id 8YPK _atom_sites.fract_transf_matrix[1][1] 1 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 1 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 1 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code CA 15 A1L0C A 1 301 1 A1L0C UY8 . DA 15 A1L0C D 1 301 1 A1L0C UY8 . EA 15 A1L0C C 1 301 1 A1L0C UY8 . FA 15 A1L0C F 1 301 1 A1L0C UY8 . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 A1L0C . . . DA 15 135.628 123.256 127.732 1 63.9 ? C1 A1L0C 301 D 1 HETATM 2 C C10 A1L0C . . . DA 15 137.322 124.83 131.369 1 128.77 ? C10 A1L0C 301 D 1 HETATM 3 C C11 A1L0C . . . DA 15 137.569 125.225 132.82 1 114.71 ? C11 A1L0C 301 D 1 HETATM 4 C C12 A1L0C . . . DA 15 137.419 124.038 133.749 1 104.74 ? C12 A1L0C 301 D 1 HETATM 5 C C13 A1L0C . . . DA 15 136.055 123.399 133.594 1 94.33 ? C13 A1L0C 301 D 1 HETATM 6 C C14 A1L0C . . . DA 15 135.79 122.991 132.15 1 92.13 ? C14 A1L0C 301 D 1 HETATM 7 C C2 A1L0C . . . DA 15 136.466 123.406 128.805 1 97.44 ? C2 A1L0C 301 D 1 HETATM 8 C C3 A1L0C . . . DA 15 135.903 122.811 126.359 1 53.96 ? C3 A1L0C 301 D 1 HETATM 9 C C4 A1L0C . . . DA 15 135.283 122.975 124.008 1 68.31 ? C4 A1L0C 301 D 1 HETATM 10 C C5 A1L0C . . . DA 15 133.899 123.12 123.375 1 51.74 ? C5 A1L0C 301 D 1 HETATM 11 C C6 A1L0C . . . DA 15 132.763 122.457 124.145 1 43.13 ? C6 A1L0C 301 D 1 HETATM 12 C C7 A1L0C . . . DA 15 133.124 121.031 124.53 1 43.21 ? C7 A1L0C 301 D 1 HETATM 13 C C8 A1L0C . . . DA 15 131.472 122.482 123.343 1 34.13 ? C8 A1L0C 301 D 1 HETATM 14 C C9 A1L0C . . . DA 15 135.951 124.185 131.221 1 122.12 ? C9 A1L0C 301 D 1 HETATM 15 N N1 A1L0C . . . DA 15 135.652 123.839 129.813 1 108.39 ? N1 A1L0C 301 D 1 HETATM 16 N N2 A1L0C . . . DA 15 134.379 123.953 129.395 1 89.99 ? N2 A1L0C 301 D 1 HETATM 17 N N3 A1L0C . . . DA 15 134.366 123.6 128.139 1 69.71 ? N3 A1L0C 301 D 1 HETATM 18 N N4 A1L0C . . . DA 15 135.273 123.457 125.379 1 56.51 ? N4 A1L0C 301 D 1 HETATM 19 B B1 A1L0C . . . DA 15 136.335 123.778 123.15 1 87.49 ? B1 A1L0C 301 D 1 HETATM 20 O O1 A1L0C . . . DA 15 137.614 123.472 123.49 1 100.43 ? O1 A1L0C 301 D 1 HETATM 21 O O2 A1L0C . . . DA 15 136.117 125.116 123.222 1 73.35 ? O2 A1L0C 301 D 1 HETATM 22 O O3 A1L0C . . . DA 15 136.686 121.887 126.133 1 72.84 ? O3 A1L0C 301 D 1 # _model_server_stats.io_time_ms 29 _model_server_stats.parse_time_ms 46 _model_server_stats.create_model_time_ms 71 _model_server_stats.query_time_ms 316 _model_server_stats.encode_time_ms 25 _model_server_stats.element_count 22 #