data_8YQD # _model_server_result.job_id MPrGSKxaOdOhokOA0EJvfQ _model_server_result.datetime_utc '2025-02-22 02:08:56' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 8yqd # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"C","auth_seq_id":200}' # _entry.id 8YQD # _exptl.entry_id 8YQD _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 308.116 _entity.id 2 _entity.src_method nat _entity.type non-polymer _entity.pdbx_description '2-(3,5-dichlorophenyl)-1,3-benzoxazole-6-carboxylic acid' _entity.pdbx_number_of_molecules 2 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 8YQD _cell.length_a 85.303 _cell.length_b 42.606 _cell.length_c 63.774 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? # _symmetry.entry_id 8YQD _symmetry.cell_setting ? _symmetry.Int_Tables_number 18 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 21 21 2' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 2 C N N ? 2 D N N # _chem_comp.formula 'C14 H7 Cl2 N O3' _chem_comp.formula_weight 308.116 _chem_comp.id 3MI _chem_comp.mon_nstd_flag . _chem_comp.name '2-(3,5-dichlorophenyl)-1,3-benzoxazole-6-carboxylic acid' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms Tafamidis # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag CAM OAA 3MI sing 1 n n OAA HOAA 3MI sing 2 n n OAB CAM 3MI doub 3 n n CAF CAE 3MI doub 4 n y CAP CAE 3MI sing 5 n y CAE HAE 3MI sing 6 n n CAS CAF 3MI sing 7 n y CAF HAF 3MI sing 8 n n CAG CAN 3MI doub 9 n y CAG CAO 3MI sing 10 n y CAG HAG 3MI sing 11 n n CAN CAH 3MI sing 12 n y CAH CAQ 3MI doub 13 n y CAH HAH 3MI sing 14 n n CAO CAI 3MI doub 15 n y CAI CAQ 3MI sing 16 n y CAI HAI 3MI sing 17 n n CAT CAJ 3MI sing 18 n y CAJ CAP 3MI doub 19 n y CAJ HAJ 3MI sing 20 n n CAR NAK 3MI doub 21 n y NAK CAS 3MI sing 22 n y CAR OAL 3MI sing 23 n y OAL CAT 3MI sing 24 n y CAP CAM 3MI sing 25 n n CLC CAN 3MI sing 26 n n CLD CAO 3MI sing 27 n n CAQ CAR 3MI sing 28 n y CAT CAS 3MI doub 29 n y # _atom_sites.entry_id 8YQD _atom_sites.fract_transf_matrix[1][1] 0.011723 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.023471 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.01568 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 2 3MI A 1 200 200 3MI 3MI . D 2 3MI B 1 200 200 3MI 3MI . E 3 HOH A 1 301 26 HOH HOH . E 3 HOH A 2 302 20 HOH HOH . E 3 HOH A 3 303 19 HOH HOH . E 3 HOH A 4 304 4 HOH HOH . E 3 HOH A 5 305 22 HOH HOH . E 3 HOH A 6 306 21 HOH HOH . E 3 HOH A 7 307 55 HOH HOH . E 3 HOH A 8 308 24 HOH HOH . E 3 HOH A 9 309 35 HOH HOH . E 3 HOH A 10 310 42 HOH HOH . E 3 HOH A 11 311 3 HOH HOH . E 3 HOH A 12 312 27 HOH HOH . E 3 HOH A 13 313 30 HOH HOH . E 3 HOH A 14 314 33 HOH HOH . E 3 HOH A 15 315 47 HOH HOH . E 3 HOH A 16 316 36 HOH HOH . E 3 HOH A 17 317 39 HOH HOH . E 3 HOH A 18 318 34 HOH HOH . E 3 HOH A 19 319 28 HOH HOH . E 3 HOH A 20 320 29 HOH HOH . E 3 HOH A 21 321 18 HOH HOH . E 3 HOH A 22 322 46 HOH HOH . E 3 HOH A 23 323 38 HOH HOH . E 3 HOH A 24 324 7 HOH HOH . E 3 HOH A 25 325 37 HOH HOH . E 3 HOH A 26 326 40 HOH HOH . E 3 HOH A 27 327 45 HOH HOH . E 3 HOH A 28 328 112 HOH HOH . E 3 HOH A 29 329 43 HOH HOH . E 3 HOH A 30 330 41 HOH HOH . E 3 HOH A 31 331 25 HOH HOH . E 3 HOH A 32 332 50 HOH HOH . E 3 HOH A 33 333 1 HOH HOH . E 3 HOH A 34 334 61 HOH HOH . E 3 HOH A 35 335 31 HOH HOH . E 3 HOH A 36 336 53 HOH HOH . E 3 HOH A 37 337 49 HOH HOH . E 3 HOH A 38 338 107 HOH HOH . E 3 HOH A 39 339 56 HOH HOH . E 3 HOH A 40 340 110 HOH HOH . E 3 HOH A 41 341 51 HOH HOH . E 3 HOH A 42 342 32 HOH HOH . E 3 HOH A 43 343 57 HOH HOH . E 3 HOH A 44 344 8 HOH HOH . E 3 HOH A 45 345 23 HOH HOH . E 3 HOH A 46 346 52 HOH HOH . E 3 HOH A 47 347 108 HOH HOH . E 3 HOH A 48 348 48 HOH HOH . E 3 HOH A 49 349 102 HOH HOH . E 3 HOH A 50 350 54 HOH HOH . E 3 HOH A 51 351 106 HOH HOH . E 3 HOH A 52 352 44 HOH HOH . E 3 HOH A 53 353 6 HOH HOH . E 3 HOH A 54 354 60 HOH HOH . E 3 HOH A 55 355 58 HOH HOH . E 3 HOH A 56 356 2 HOH HOH . E 3 HOH A 57 357 62 HOH HOH . E 3 HOH A 58 358 63 HOH HOH . F 3 HOH B 1 301 68 HOH HOH . F 3 HOH B 2 302 69 HOH HOH . F 3 HOH B 3 303 67 HOH HOH . F 3 HOH B 4 304 78 HOH HOH . F 3 HOH B 5 305 14 HOH HOH . F 3 HOH B 6 306 105 HOH HOH . F 3 HOH B 7 307 79 HOH HOH . F 3 HOH B 8 308 80 HOH HOH . F 3 HOH B 9 309 70 HOH HOH . F 3 HOH B 10 310 74 HOH HOH . F 3 HOH B 11 311 11 HOH HOH . F 3 HOH B 12 312 83 HOH HOH . F 3 HOH B 13 313 77 HOH HOH . F 3 HOH B 14 314 13 HOH HOH . F 3 HOH B 15 315 12 HOH HOH . F 3 HOH B 16 316 10 HOH HOH . F 3 HOH B 17 317 71 HOH HOH . F 3 HOH B 18 318 85 HOH HOH . F 3 HOH B 19 319 92 HOH HOH . F 3 HOH B 20 320 91 HOH HOH . F 3 HOH B 21 321 75 HOH HOH . F 3 HOH B 22 322 98 HOH HOH . F 3 HOH B 23 323 72 HOH HOH . F 3 HOH B 24 324 97 HOH HOH . F 3 HOH B 25 325 109 HOH HOH . F 3 HOH B 26 326 88 HOH HOH . F 3 HOH B 27 327 95 HOH HOH . F 3 HOH B 28 328 9 HOH HOH . F 3 HOH B 29 329 86 HOH HOH . F 3 HOH B 30 330 82 HOH HOH . F 3 HOH B 31 331 100 HOH HOH . F 3 HOH B 32 332 65 HOH HOH . F 3 HOH B 33 333 73 HOH HOH . F 3 HOH B 34 334 90 HOH HOH . F 3 HOH B 35 335 16 HOH HOH . F 3 HOH B 36 336 64 HOH HOH . F 3 HOH B 37 337 89 HOH HOH . F 3 HOH B 38 338 17 HOH HOH . F 3 HOH B 39 339 96 HOH HOH . F 3 HOH B 40 340 99 HOH HOH . F 3 HOH B 41 341 5 HOH HOH . F 3 HOH B 42 342 76 HOH HOH . F 3 HOH B 43 343 104 HOH HOH . F 3 HOH B 44 344 15 HOH HOH . F 3 HOH B 45 345 59 HOH HOH . F 3 HOH B 46 346 81 HOH HOH . F 3 HOH B 47 347 84 HOH HOH . F 3 HOH B 48 348 93 HOH HOH . F 3 HOH B 49 349 66 HOH HOH . F 3 HOH B 50 350 87 HOH HOH . F 3 HOH B 51 351 94 HOH HOH . F 3 HOH B 52 352 101 HOH HOH . F 3 HOH B 53 353 111 HOH HOH . F 3 HOH B 54 354 103 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 O OAA 3MI . . . C 2 -0.481 20.776 32.281 0.4 37.59 ? OAA 3MI 200 A 1 HETATM 2 O OAB 3MI . . . C 2 -2.066 19.789 31.199 0.4 37.67 ? OAB 3MI 200 A 1 HETATM 3 C CAE 3MI . . . C 2 0.809 21.472 29.986 0.4 34.64 ? CAE 3MI 200 A 1 HETATM 4 C CAF 3MI . . . C 2 1.358 21.821 28.758 0.4 33.4 ? CAF 3MI 200 A 1 HETATM 5 C CAG 3MI . . . C 2 -0.149 21.427 21.486 0.4 29.28 ? CAG 3MI 200 A 1 HETATM 6 C CAH 3MI . . . C 2 -1.158 21 23.631 0.4 30.11 ? CAH 3MI 200 A 1 HETATM 7 C CAI 3MI . . . C 2 1.153 21.661 23.503 0.4 29.39 ? CAI 3MI 200 A 1 HETATM 8 C CAJ 3MI . . . C 2 -1.03 20.529 28.78 0.4 33.48 ? CAJ 3MI 200 A 1 HETATM 9 N NAK 3MI . . . C 2 1.044 21.767 26.347 0.4 30.9 ? NAK 3MI 200 A 1 HETATM 10 O OAL 3MI . . . C 2 -0.851 20.757 26.327 0.4 30.77 ? OAL 3MI 200 A 1 HETATM 11 C CAM 3MI . . . C 2 -1.001 20.437 31.195 0.4 35.9 ? CAM 3MI 200 A 1 HETATM 12 C CAN 3MI . . . C 2 -1.257 21.077 22.248 0.4 29.51 ? CAN 3MI 200 A 1 HETATM 13 C CAO 3MI . . . C 2 1.056 21.722 22.111 0.4 29.42 ? CAO 3MI 200 A 1 HETATM 14 C CAP 3MI . . . C 2 -0.419 20.824 29.993 0.4 34.82 ? CAP 3MI 200 A 1 HETATM 15 C CAQ 3MI . . . C 2 0.032 21.331 24.263 0.4 29.75 ? CAQ 3MI 200 A 1 HETATM 16 C CAR 3MI . . . C 2 0.097 21.237 25.588 0.4 30.93 ? CAR 3MI 200 A 1 HETATM 17 C CAS 3MI . . . C 2 0.721 21.531 27.623 0.4 32.36 ? CAS 3MI 200 A 1 HETATM 18 C CAT 3MI . . . C 2 -0.452 20.896 27.636 0.4 32.15 ? CAT 3MI 200 A 1 HETATM 19 CL CLC 3MI . . . C 2 -2.773 20.717 21.492 0.4 27.03 ? CLC 3MI 200 A 1 HETATM 20 CL CLD 3MI . . . C 2 2.448 22.159 21.139 0.4 27.5 ? CLD 3MI 200 A 1 # _model_server_stats.io_time_ms 11 _model_server_stats.parse_time_ms 11 _model_server_stats.create_model_time_ms 8 _model_server_stats.query_time_ms 273 _model_server_stats.encode_time_ms 4 _model_server_stats.element_count 20 #