data_8YQZ # _model_server_result.job_id vxbRpBo2N3NOIPptOCUUpA _model_server_result.datetime_utc '2024-11-07 03:34:47' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 8yqz # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"L","auth_seq_id":1502}' # _entry.id 8YQZ # _exptl.entry_id 8YQZ _exptl.method 'ELECTRON MICROSCOPY' # _entity.details ? _entity.formula_weight 65.409 _entity.id 12 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'ZINC ION' _entity.pdbx_number_of_molecules 4 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 8YQZ _cell.length_a 1 _cell.length_b 1 _cell.length_c 1 _cell.Z_PDB ? _cell.pdbx_unique_axis ? # _symmetry.entry_id 8YQZ _symmetry.cell_setting ? _symmetry.Int_Tables_number 1 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 1' # _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details decameric _pdbx_struct_assembly.oligomeric_count 10 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J,K,L,M,N,O _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation ? _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 12 L N N ? 12 M N N ? 12 N N N ? 12 O N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order metalc ? metalc1 A SG CYS 59 A CYS 59 1_555 L ZN ZN . A ZN 1502 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.482 ? metalc ? metalc2 A SG CYS 62 A CYS 62 1_555 L ZN ZN . A ZN 1502 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.282 ? metalc ? metalc3 A SG CYS 69 A CYS 69 1_555 L ZN ZN . A ZN 1502 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.294 ? metalc ? metalc4 A NE2 HIS 72 A HIS 72 1_555 L ZN ZN . A ZN 1502 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.296 ? metalc ? metalc5 A OD1 ASP 457 A ASP 457 1_555 K MG MG . A MG 1501 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.437 ? metalc ? metalc6 A OD1 ASP 459 A ASP 459 1_555 K MG MG . A MG 1501 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.022 ? metalc ? metalc7 A OD1 ASP 461 A ASP 461 1_555 K MG MG . A MG 1501 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.318 ? metalc ? metalc8 B SG CYS 1180 B CYS 1180 1_555 M ZN ZN . B ZN 1301 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.29 ? metalc ? metalc9 B SG CYS 1183 B CYS 1183 1_555 M ZN ZN . B ZN 1301 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.228 ? metalc ? metalc10 B SG CYS 1198 B CYS 1198 1_555 M ZN ZN . B ZN 1301 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.722 ? metalc ? metalc11 B SG CYS 1201 B CYS 1201 1_555 M ZN ZN . B ZN 1301 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.344 ? metalc ? metalc12 G SG CYS 73 G CYS 73 1_555 N ZN ZN . G ZN 201 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.594 ? metalc ? metalc13 G SG CYS 76 G CYS 76 1_555 N ZN ZN . G ZN 201 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.313 ? metalc ? metalc14 G SG CYS 96 G CYS 96 1_555 N ZN ZN . G ZN 201 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.305 ? metalc ? metalc15 G SG CYS 98 G CYS 98 1_555 N ZN ZN . G ZN 201 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.294 ? metalc ? metalc16 H SG CYS 7 H CYS 7 1_555 O ZN ZN . H ZN 101 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.324 ? metalc ? metalc17 H SG CYS 10 H CYS 10 1_555 O ZN ZN . H ZN 101 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.314 ? metalc ? metalc18 H SG CYS 65 H CYS 65 1_555 O ZN ZN . H ZN 101 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.343 ? metalc ? metalc19 H SG CYS 66 H CYS 66 1_555 O ZN ZN . H ZN 101 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.324 ? hydrog 'DG-DC PAIR' hydrog1 I N2 DG 1 X DG 20 1_555 J N3 DC 5 Y DC -20 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog 'REVERSED WATSON-CRICK' hydrog2 I N3 DC 2 X DC 21 1_555 J N2 DG 4 Y DG -21 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog 'REVERSED WATSON-CRICK' hydrog3 I O2 DC 2 X DC 21 1_555 J N1 DG 4 Y DG -21 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog4 I N3 DC 3 X DC 22 1_555 J N1 DG 3 Y DG -22 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog5 I N4 DC 3 X DC 22 1_555 J O6 DG 3 Y DG -22 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog6 I O2 DC 3 X DC 22 1_555 J N2 DG 3 Y DG -22 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog7 I N1 DG 4 X DG 23 1_555 J N3 DC 2 Y DC -23 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog8 I N2 DG 4 X DG 23 1_555 J O2 DC 2 Y DC -23 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog9 I O6 DG 4 X DG 23 1_555 J N4 DC 2 Y DC -23 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog10 I N1 DA 5 X DA 24 1_555 J N3 DT 1 Y DT -24 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog11 I N6 DA 5 X DA 24 1_555 J O4 DT 1 Y DT -24 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? # _chem_comp.formula 'Zn 2' _chem_comp.formula_weight 65.409 _chem_comp.id ZN _chem_comp.mon_nstd_flag . _chem_comp.name 'ZINC ION' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # _atom_sites.entry_id 8YQZ _atom_sites.fract_transf_matrix[1][1] 1 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 1 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 1 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code K 11 MG A 1 1501 1501 MG MG . L 12 ZN A 1 1502 1502 ZN ZN . M 12 ZN B 1 1301 1301 ZN ZN . N 12 ZN G 1 201 201 ZN ZN . O 12 ZN H 1 101 101 ZN ZN . # _atom_site.group_PDB HETATM _atom_site.id 1 _atom_site.type_symbol ZN _atom_site.label_atom_id ZN _atom_site.label_comp_id ZN _atom_site.label_seq_id . _atom_site.label_alt_id . _atom_site.pdbx_PDB_ins_code . _atom_site.label_asym_id L _atom_site.label_entity_id 12 _atom_site.Cartn_x 165.677 _atom_site.Cartn_y 108.087 _atom_site.Cartn_z 124.751 _atom_site.occupancy 1 _atom_site.B_iso_or_equiv 64.77 _atom_site.pdbx_formal_charge ? _atom_site.auth_atom_id ZN _atom_site.auth_comp_id ZN _atom_site.auth_seq_id 1502 _atom_site.auth_asym_id A _atom_site.pdbx_PDB_model_num 1 # _model_server_stats.io_time_ms 20 _model_server_stats.parse_time_ms 11 _model_server_stats.create_model_time_ms 31 _model_server_stats.query_time_ms 323 _model_server_stats.encode_time_ms 8 _model_server_stats.element_count 1 #