data_8YR2 # _model_server_result.job_id mneAtjNbqXBlB8arB56wHg _model_server_result.datetime_utc '2025-03-03 20:27:06' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 8yr2 # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"U","auth_seq_id":701}' # _entry.id 8YR2 # _exptl.entry_id 8YR2 _exptl.method 'ELECTRON MICROSCOPY' # _entity.details ? _entity.formula_weight 271.354 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description nisoxetine _entity.pdbx_number_of_molecules 2 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 8YR2 _cell.length_a 1 _cell.length_b 1 _cell.length_c 1 _cell.Z_PDB ? _cell.pdbx_unique_axis ? # _symmetry.entry_id 8YR2 _symmetry.cell_setting ? _symmetry.Int_Tables_number 1 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 1' # _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J,K,L,M,N,O,P,Q,R,S,T,U,V,W,X,Y,Z,AA,BA,CA,DA,EA,FA,GA,HA,IA,JA,KA,LA _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 2 C N N ? 2 U N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order metalc ? metalc1 A O GLY 71 B GLY 71 1_555 F NA NA . B NA 704 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.249 ? metalc ? metalc2 A O ALA 73 B ALA 73 1_555 E NA NA . B NA 703 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.904 ? metalc ? metalc3 A O VAL 74 B VAL 74 1_555 F NA NA . B NA 704 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.063 ? metalc ? metalc4 A OD1 ASN 78 B ASN 78 1_555 E NA NA . B NA 703 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.621 ? metalc ? metalc5 A O SER 318 B SER 318 1_555 E NA NA . B NA 703 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.639 ? metalc ? metalc6 A OD1 ASP 418 B ASP 418 1_555 F NA NA . B NA 704 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.11 ? metalc ? metalc7 A OD2 ASP 418 B ASP 418 1_555 F NA NA . B NA 704 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 3.177 ? metalc ? metalc8 A OG SER 419 B SER 419 1_555 F NA NA . B NA 704 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.895 ? metalc ? metalc9 B O GLY 71 A GLY 71 1_555 X NA NA . A NA 704 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.212 ? metalc ? metalc10 B O VAL 74 A VAL 74 1_555 X NA NA . A NA 704 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.358 ? metalc ? metalc11 B OD1 ASN 78 A ASN 78 1_555 W NA NA . A NA 703 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.752 ? metalc ? metalc12 B O SER 318 A SER 318 1_555 W NA NA . A NA 703 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.599 ? metalc ? metalc13 B O LEU 415 A LEU 415 1_555 X NA NA . A NA 704 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 3.026 ? metalc ? metalc14 B OD2 ASP 418 A ASP 418 1_555 X NA NA . A NA 704 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 3.077 ? metalc ? metalc15 B OG SER 419 A SER 419 1_555 X NA NA . A NA 704 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.642 ? # _chem_comp.formula 'C17 H21 N O2' _chem_comp.formula_weight 271.354 _chem_comp.id 41U _chem_comp.mon_nstd_flag . _chem_comp.name nisoxetine _chem_comp.type non-polymer _chem_comp.pdbx_synonyms (3S)-3-(2-methoxyphenoxy)-N-methyl-3-phenylpropan-1-amine # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C3 C2 41U doub 1 n y C3 C4 41U sing 2 n y C2 C1 41U sing 3 n y C4 C5 41U doub 4 n y C12 C13 41U doub 5 n y C12 C11 41U sing 6 n y C1 C 41U doub 7 n y C13 C8 41U sing 8 n y C11 C10 41U doub 9 n y C5 C 41U sing 10 n y C5 O1 41U sing 11 n n C O 41U sing 12 n n C8 C7 41U sing 13 n n C8 C9 41U doub 14 n y C14 C7 41U sing 15 n n C14 C15 41U sing 16 n n C10 C9 41U sing 17 n y O1 C6 41U sing 18 n n O C7 41U sing 19 n n C15 N 41U sing 20 n n N C16 41U sing 21 n n C16 H1 41U sing 22 n n C16 H2 41U sing 23 n n C16 H3 41U sing 24 n n C15 H4 41U sing 25 n n C15 H5 41U sing 26 n n C14 H6 41U sing 27 n n C14 H7 41U sing 28 n n C13 H8 41U sing 29 n n C12 H9 41U sing 30 n n C11 H10 41U sing 31 n n C10 H11 41U sing 32 n n C3 H12 41U sing 33 n n C2 H13 41U sing 34 n n C1 H14 41U sing 35 n n N H15 41U sing 36 n n C4 H17 41U sing 37 n n C9 H18 41U sing 38 n n C7 H19 41U sing 39 n n C6 H20 41U sing 40 n n C6 H21 41U sing 41 n n C6 H22 41U sing 42 n n # _atom_sites.entry_id 8YR2 _atom_sites.fract_transf_matrix[1][1] 1 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 1 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 1 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 2 41U B 1 701 701 41U 41U . D 3 PIO B 1 702 702 PIO PIO . E 4 NA B 1 703 12 NA NA . F 4 NA B 1 704 13 NA NA . G 5 CL B 1 705 6 CL CL . H 6 CLR B 1 706 704 CLR CLR . I 6 CLR B 1 707 706 CLR CLR . J 6 CLR B 1 708 709 CLR CLR . K 6 CLR B 1 709 710 CLR CLR . L 6 CLR B 1 710 712 CLR CLR . M 6 CLR B 1 711 713 CLR CLR . N 6 CLR B 1 712 714 CLR CLR . O 7 A1LX7 B 1 713 705 A1LX7 PI0 . P 7 A1LX7 B 1 714 716 A1LX7 PI0 . Q 6 CLR B 1 715 701 CLR CLR . R 6 CLR B 1 716 702 CLR CLR . S 6 CLR B 1 717 703 CLR CLR . T 6 CLR B 1 718 704 CLR CLR . U 2 41U A 1 701 701 41U 41U . V 3 PIO A 1 702 702 PIO PIO . W 4 NA A 1 703 10 NA NA . X 4 NA A 1 704 11 NA NA . Y 5 CL A 1 705 5 CL CL . Z 6 CLR A 1 706 707 CLR CLR . AA 6 CLR A 1 707 708 CLR CLR . BA 6 CLR A 1 708 711 CLR CLR . CA 6 CLR A 1 709 715 CLR CLR . DA 6 CLR A 1 710 718 CLR CLR . EA 7 A1LX7 A 1 711 712 A1LX7 PI0 . FA 7 A1LX7 A 1 712 713 A1LX7 PI0 . GA 6 CLR A 1 713 707 CLR CLR . HA 6 CLR A 1 714 708 CLR CLR . IA 6 CLR A 1 715 709 CLR CLR . JA 6 CLR A 1 716 713 CLR CLR . KA 8 HOH B 1 801 7 HOH HOH . KA 8 HOH B 2 802 6 HOH HOH . KA 8 HOH B 3 803 5 HOH HOH . LA 8 HOH A 1 801 4 HOH HOH . LA 8 HOH A 2 802 3 HOH HOH . LA 8 HOH A 3 803 1 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C16 41U . . . U 2 83.478 68.157 93.425 1 30 ? C16 41U 701 A 1 HETATM 2 O O1 41U . . . U 2 85.921 73.38 95.043 1 30 ? O1 41U 701 A 1 HETATM 3 C C15 41U . . . U 2 82.392 70.235 93.206 1 30 ? C15 41U 701 A 1 HETATM 4 C C14 41U . . . U 2 83.482 70.663 92.245 1 30 ? C14 41U 701 A 1 HETATM 5 C C13 41U . . . U 2 86.784 71.703 91.985 1 30 ? C13 41U 701 A 1 HETATM 6 C C12 41U . . . U 2 87.734 71.85 90.999 1 30 ? C12 41U 701 A 1 HETATM 7 C C11 41U . . . U 2 87.347 72.196 89.725 1 30 ? C11 41U 701 A 1 HETATM 8 C C10 41U . . . U 2 86.015 72.398 89.436 1 30 ? C10 41U 701 A 1 HETATM 9 O O 41U . . . U 2 83.637 72.869 93.063 1 30 ? O 41U 701 A 1 HETATM 10 C C3 41U . . . U 2 84.857 76.725 94.132 1 30 ? C3 41U 701 A 1 HETATM 11 C C2 41U . . . U 2 83.84 76.489 93.249 1 30 ? C2 41U 701 A 1 HETATM 12 C C1 41U . . . U 2 83.492 75.199 92.942 1 30 ? C1 41U 701 A 1 HETATM 13 N N 41U . . . U 2 82.224 68.803 93.118 1 30 ? N 41U 701 A 1 HETATM 14 C C 41U . . . U 2 84.142 74.117 93.486 1 30 ? C 41U 701 A 1 HETATM 15 C C4 41U . . . U 2 85.515 75.659 94.695 1 30 ? C4 41U 701 A 1 HETATM 16 C C9 41U . . . U 2 85.063 72.253 90.42 1 30 ? C9 41U 701 A 1 HETATM 17 C C8 41U . . . U 2 85.451 71.92 91.698 1 30 ? C8 41U 701 A 1 HETATM 18 C C7 41U . . . U 2 84.407 71.738 92.785 1 30 ? C7 41U 701 A 1 HETATM 19 C C6 41U . . . U 2 87.067 73.866 95.665 1 30 ? C6 41U 701 A 1 HETATM 20 C C5 41U . . . U 2 85.172 74.362 94.394 1 30 ? C5 41U 701 A 1 # _model_server_stats.io_time_ms 9 _model_server_stats.parse_time_ms 8 _model_server_stats.create_model_time_ms 11 _model_server_stats.query_time_ms 340 _model_server_stats.encode_time_ms 3 _model_server_stats.element_count 20 #