data_8YR2 # _model_server_result.job_id wImqwtHS42-bDaXQ9DwXUQ _model_server_result.datetime_utc '2025-03-03 20:13:44' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 8yr2 # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"Q","auth_seq_id":715}' # _entry.id 8YR2 # _exptl.entry_id 8YR2 _exptl.method 'ELECTRON MICROSCOPY' # _entity.details ? _entity.formula_weight 386.654 _entity.id 6 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description CHOLESTEROL _entity.pdbx_number_of_molecules 20 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 8YR2 _cell.length_a 1 _cell.length_b 1 _cell.length_c 1 _cell.Z_PDB ? _cell.pdbx_unique_axis ? # _symmetry.entry_id 8YR2 _symmetry.cell_setting ? _symmetry.Int_Tables_number 1 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 1' # _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J,K,L,M,N,O,P,Q,R,S,T,U,V,W,X,Y,Z,AA,BA,CA,DA,EA,FA,GA,HA,IA,JA,KA,LA _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 6 H N N ? 6 I N N ? 6 J N N ? 6 K N N ? 6 L N N ? 6 M N N ? 6 N N N ? 6 Q N N ? 6 R N N ? 6 S N N ? 6 T N N ? 6 Z N N ? 6 AA N N ? 6 BA N N ? 6 CA N N ? 6 DA N N ? 6 GA N N ? 6 HA N N ? 6 IA N N ? 6 JA N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order metalc ? metalc1 A O GLY 71 B GLY 71 1_555 F NA NA . B NA 704 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.249 ? metalc ? metalc2 A O ALA 73 B ALA 73 1_555 E NA NA . B NA 703 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.904 ? metalc ? metalc3 A O VAL 74 B VAL 74 1_555 F NA NA . B NA 704 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.063 ? metalc ? metalc4 A OD1 ASN 78 B ASN 78 1_555 E NA NA . B NA 703 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.621 ? metalc ? metalc5 A O SER 318 B SER 318 1_555 E NA NA . B NA 703 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.639 ? metalc ? metalc6 A OD1 ASP 418 B ASP 418 1_555 F NA NA . B NA 704 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.11 ? metalc ? metalc7 A OD2 ASP 418 B ASP 418 1_555 F NA NA . B NA 704 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 3.177 ? metalc ? metalc8 A OG SER 419 B SER 419 1_555 F NA NA . B NA 704 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.895 ? metalc ? metalc9 B O GLY 71 A GLY 71 1_555 X NA NA . A NA 704 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.212 ? metalc ? metalc10 B O VAL 74 A VAL 74 1_555 X NA NA . A NA 704 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.358 ? metalc ? metalc11 B OD1 ASN 78 A ASN 78 1_555 W NA NA . A NA 703 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.752 ? metalc ? metalc12 B O SER 318 A SER 318 1_555 W NA NA . A NA 703 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.599 ? metalc ? metalc13 B O LEU 415 A LEU 415 1_555 X NA NA . A NA 704 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 3.026 ? metalc ? metalc14 B OD2 ASP 418 A ASP 418 1_555 X NA NA . A NA 704 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 3.077 ? metalc ? metalc15 B OG SER 419 A SER 419 1_555 X NA NA . A NA 704 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.642 ? # _chem_comp.formula 'C27 H46 O' _chem_comp.formula_weight 386.654 _chem_comp.id CLR _chem_comp.mon_nstd_flag . _chem_comp.name CHOLESTEROL _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C1 C2 CLR sing 198 n n C1 C10 CLR sing 199 n n C1 H11 CLR sing 200 n n C1 H12 CLR sing 201 n n C2 C3 CLR sing 202 n n C2 H21 CLR sing 203 n n C2 H22 CLR sing 204 n n C3 C4 CLR sing 205 n n C3 O1 CLR sing 206 n n C3 H3 CLR sing 207 n n C4 C5 CLR sing 208 n n C4 H41 CLR sing 209 n n C4 H42 CLR sing 210 n n C5 C6 CLR doub 211 n n C5 C10 CLR sing 212 n n C6 C7 CLR sing 213 n n C6 H6 CLR sing 214 n n C7 C8 CLR sing 215 n n C7 H71 CLR sing 216 n n C7 H72 CLR sing 217 n n C8 C9 CLR sing 218 n n C8 C14 CLR sing 219 n n C8 H8 CLR sing 220 n n C9 C10 CLR sing 221 n n C9 C11 CLR sing 222 n n C9 H9 CLR sing 223 n n C10 C19 CLR sing 224 n n C11 C12 CLR sing 225 n n C11 H111 CLR sing 226 n n C11 H112 CLR sing 227 n n C12 C13 CLR sing 228 n n C12 H121 CLR sing 229 n n C12 H122 CLR sing 230 n n C13 C14 CLR sing 231 n n C13 C17 CLR sing 232 n n C13 C18 CLR sing 233 n n C14 C15 CLR sing 234 n n C14 H14 CLR sing 235 n n C15 C16 CLR sing 236 n n C15 H151 CLR sing 237 n n C15 H152 CLR sing 238 n n C16 C17 CLR sing 239 n n C16 H161 CLR sing 240 n n C16 H162 CLR sing 241 n n C17 C20 CLR sing 242 n n C17 H17 CLR sing 243 n n C18 H181 CLR sing 244 n n C18 H182 CLR sing 245 n n C18 H183 CLR sing 246 n n C19 H191 CLR sing 247 n n C19 H192 CLR sing 248 n n C19 H193 CLR sing 249 n n C20 C21 CLR sing 250 n n C20 C22 CLR sing 251 n n C20 H20 CLR sing 252 n n C21 H211 CLR sing 253 n n C21 H212 CLR sing 254 n n C21 H213 CLR sing 255 n n C22 C23 CLR sing 256 n n C22 H221 CLR sing 257 n n C22 H222 CLR sing 258 n n C23 C24 CLR sing 259 n n C23 H231 CLR sing 260 n n C23 H232 CLR sing 261 n n C24 C25 CLR sing 262 n n C24 H241 CLR sing 263 n n C24 H242 CLR sing 264 n n C25 C26 CLR sing 265 n n C25 C27 CLR sing 266 n n C25 H25 CLR sing 267 n n C26 H261 CLR sing 268 n n C26 H262 CLR sing 269 n n C26 H263 CLR sing 270 n n C27 H271 CLR sing 271 n n C27 H272 CLR sing 272 n n C27 H273 CLR sing 273 n n O1 H1 CLR sing 274 n n # _atom_sites.entry_id 8YR2 _atom_sites.fract_transf_matrix[1][1] 1 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 1 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 1 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 2 41U B 1 701 701 41U 41U . D 3 PIO B 1 702 702 PIO PIO . E 4 NA B 1 703 12 NA NA . F 4 NA B 1 704 13 NA NA . G 5 CL B 1 705 6 CL CL . H 6 CLR B 1 706 704 CLR CLR . I 6 CLR B 1 707 706 CLR CLR . J 6 CLR B 1 708 709 CLR CLR . K 6 CLR B 1 709 710 CLR CLR . L 6 CLR B 1 710 712 CLR CLR . M 6 CLR B 1 711 713 CLR CLR . N 6 CLR B 1 712 714 CLR CLR . O 7 A1LX7 B 1 713 705 A1LX7 PI0 . P 7 A1LX7 B 1 714 716 A1LX7 PI0 . Q 6 CLR B 1 715 701 CLR CLR . R 6 CLR B 1 716 702 CLR CLR . S 6 CLR B 1 717 703 CLR CLR . T 6 CLR B 1 718 704 CLR CLR . U 2 41U A 1 701 701 41U 41U . V 3 PIO A 1 702 702 PIO PIO . W 4 NA A 1 703 10 NA NA . X 4 NA A 1 704 11 NA NA . Y 5 CL A 1 705 5 CL CL . Z 6 CLR A 1 706 707 CLR CLR . AA 6 CLR A 1 707 708 CLR CLR . BA 6 CLR A 1 708 711 CLR CLR . CA 6 CLR A 1 709 715 CLR CLR . DA 6 CLR A 1 710 718 CLR CLR . EA 7 A1LX7 A 1 711 712 A1LX7 PI0 . FA 7 A1LX7 A 1 712 713 A1LX7 PI0 . GA 6 CLR A 1 713 707 CLR CLR . HA 6 CLR A 1 714 708 CLR CLR . IA 6 CLR A 1 715 709 CLR CLR . JA 6 CLR A 1 716 713 CLR CLR . KA 8 HOH B 1 801 7 HOH HOH . KA 8 HOH B 2 802 6 HOH HOH . KA 8 HOH B 3 803 5 HOH HOH . LA 8 HOH A 1 801 4 HOH HOH . LA 8 HOH A 2 802 3 HOH HOH . LA 8 HOH A 3 803 1 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 CLR . . . Q 6 121.256 124.528 102.743 1 20 ? C1 CLR 715 B 1 HETATM 2 C C2 CLR . . . Q 6 121.724 124.431 104.19 1 20 ? C2 CLR 715 B 1 HETATM 3 C C3 CLR . . . Q 6 121.721 122.989 104.684 1 20 ? C3 CLR 715 B 1 HETATM 4 C C4 CLR . . . Q 6 122.658 122.15 103.828 1 20 ? C4 CLR 715 B 1 HETATM 5 C C5 CLR . . . Q 6 122.302 122.359 102.379 1 20 ? C5 CLR 715 B 1 HETATM 6 C C6 CLR . . . Q 6 122.068 121.324 101.567 1 20 ? C6 CLR 715 B 1 HETATM 7 C C7 CLR . . . Q 6 122.613 121.326 100.164 1 20 ? C7 CLR 715 B 1 HETATM 8 C C8 CLR . . . Q 6 122.519 122.723 99.573 1 20 ? C8 CLR 715 B 1 HETATM 9 C C9 CLR . . . Q 6 121.654 123.654 100.419 1 20 ? C9 CLR 715 B 1 HETATM 10 C C10 CLR . . . Q 6 122.194 123.749 101.836 1 20 ? C10 CLR 715 B 1 HETATM 11 C C11 CLR . . . Q 6 121.514 125.042 99.789 1 20 ? C11 CLR 715 B 1 HETATM 12 C C12 CLR . . . Q 6 121.105 124.986 98.318 1 20 ? C12 CLR 715 B 1 HETATM 13 C C13 CLR . . . Q 6 122.058 124.062 97.581 1 20 ? C13 CLR 715 B 1 HETATM 14 C C14 CLR . . . Q 6 121.925 122.69 98.18 1 20 ? C14 CLR 715 B 1 HETATM 15 C C15 CLR . . . Q 6 122.562 121.765 97.161 1 20 ? C15 CLR 715 B 1 HETATM 16 C C16 CLR . . . Q 6 122.227 122.41 95.819 1 20 ? C16 CLR 715 B 1 HETATM 17 C C17 CLR . . . Q 6 121.788 123.843 96.106 1 20 ? C17 CLR 715 B 1 HETATM 18 C C18 CLR . . . Q 6 123.495 124.532 97.767 1 20 ? C18 CLR 715 B 1 HETATM 19 C C19 CLR . . . Q 6 123.581 124.38 101.835 1 20 ? C19 CLR 715 B 1 HETATM 20 C C20 CLR . . . Q 6 122.531 124.832 95.225 1 20 ? C20 CLR 715 B 1 HETATM 21 C C21 CLR . . . Q 6 121.878 126.205 95.26 1 20 ? C21 CLR 715 B 1 HETATM 22 C C22 CLR . . . Q 6 122.594 124.314 93.8 1 20 ? C22 CLR 715 B 1 HETATM 23 C C23 CLR . . . Q 6 123.787 124.892 93.052 1 20 ? C23 CLR 715 B 1 HETATM 24 C C24 CLR . . . Q 6 124.695 123.773 92.568 1 20 ? C24 CLR 715 B 1 HETATM 25 C C25 CLR . . . Q 6 125.389 123.112 93.749 1 20 ? C25 CLR 715 B 1 HETATM 26 C C26 CLR . . . Q 6 124.968 121.653 93.9 1 20 ? C26 CLR 715 B 1 HETATM 27 C C27 CLR . . . Q 6 126.902 123.244 93.622 1 20 ? C27 CLR 715 B 1 HETATM 28 O O1 CLR . . . Q 6 122.162 122.953 106.044 1 20 ? O1 CLR 715 B 1 # _model_server_stats.io_time_ms 10 _model_server_stats.parse_time_ms 9 _model_server_stats.create_model_time_ms 18 _model_server_stats.query_time_ms 300 _model_server_stats.encode_time_ms 14 _model_server_stats.element_count 28 #