data_8YRG # _model_server_result.job_id CrhhBnOQYvPlTj6nMaKPgg _model_server_result.datetime_utc '2024-11-21 22:28:53' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 8yrg # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"F","auth_seq_id":501}' # _entry.id 8YRG # _exptl.entry_id 8YRG _exptl.method 'ELECTRON MICROSCOPY' # _entity.details ? _entity.formula_weight 288.277 _entity.id 6 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description '[2,6-di(propan-2-yl)phenoxy]methyl dihydrogen phosphate' _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 8YRG _cell.length_a 1 _cell.length_b 1 _cell.length_c 1 _cell.Z_PDB ? _cell.pdbx_unique_axis ? # _symmetry.entry_id 8YRG _symmetry.cell_setting ? _symmetry.Int_Tables_number 1 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 1' # _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details pentameric _pdbx_struct_assembly.oligomeric_count 5 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 6 _struct_asym.id F _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order disulf ? disulf1 D SG CYS 22 E CYS 22 1_555 D SG CYS 96 E CYS 96 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.038 ? disulf ? disulf2 D SG CYS 159 E CYS 147 1_555 D SG CYS 229 E CYS 217 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.038 ? # _chem_comp.formula 'C13 H21 O5 P' _chem_comp.formula_weight 288.277 _chem_comp.id A1LZU _chem_comp.mon_nstd_flag . _chem_comp.name '[2,6-di(propan-2-yl)phenoxy]methyl dihydrogen phosphate' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag O3 P1 A1LZU doub 1 n n O5 P1 A1LZU sing 2 n n P1 O2 A1LZU sing 3 n n P1 O4 A1LZU sing 4 n n O2 C13 A1LZU sing 5 n n C11 C10 A1LZU sing 6 n n C13 O1 A1LZU sing 7 n n O1 C5 A1LZU sing 8 n n C10 C12 A1LZU sing 9 n n C10 C6 A1LZU sing 10 n n C1 C2 A1LZU sing 11 n n C5 C6 A1LZU doub 12 n y C5 C4 A1LZU sing 13 n y C6 C7 A1LZU sing 14 n y C2 C4 A1LZU sing 15 n n C2 C3 A1LZU sing 16 n n C4 C9 A1LZU doub 17 n y C7 C8 A1LZU doub 18 n y C9 C8 A1LZU sing 19 n y C1 H1 A1LZU sing 20 n n C1 H2 A1LZU sing 21 n n C1 H3 A1LZU sing 22 n n C10 H4 A1LZU sing 23 n n C11 H5 A1LZU sing 24 n n C11 H6 A1LZU sing 25 n n C11 H7 A1LZU sing 26 n n C12 H8 A1LZU sing 27 n n C12 H9 A1LZU sing 28 n n C12 H10 A1LZU sing 29 n n C13 H11 A1LZU sing 30 n n C13 H12 A1LZU sing 31 n n C2 H13 A1LZU sing 32 n n C3 H14 A1LZU sing 33 n n C3 H15 A1LZU sing 34 n n C3 H16 A1LZU sing 35 n n C7 H17 A1LZU sing 36 n n C8 H18 A1LZU sing 37 n n C9 H19 A1LZU sing 38 n n O4 H20 A1LZU sing 39 n n O5 H21 A1LZU sing 40 n n # _atom_sites.entry_id 8YRG _atom_sites.fract_transf_matrix[1][1] 1 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 1 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 1 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # _pdbx_nonpoly_scheme.asym_id F _pdbx_nonpoly_scheme.entity_id 6 _pdbx_nonpoly_scheme.mon_id A1LZU _pdbx_nonpoly_scheme.pdb_strand_id R _pdbx_nonpoly_scheme.ndb_seq_num 1 _pdbx_nonpoly_scheme.pdb_seq_num 501 _pdbx_nonpoly_scheme.auth_seq_num 501 _pdbx_nonpoly_scheme.pdb_mon_id A1LZU _pdbx_nonpoly_scheme.auth_mon_id UNL _pdbx_nonpoly_scheme.pdb_ins_code . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 A1LZU . . . F 6 115.797 105.623 159.984 1 84.12 ? C1 A1LZU 501 R 1 HETATM 2 C C10 A1LZU . . . F 6 119.673 109.908 159.53 1 84.12 ? C10 A1LZU 501 R 1 HETATM 3 C C11 A1LZU . . . F 6 120.404 109.101 158.46 1 84.12 ? C11 A1LZU 501 R 1 HETATM 4 C C12 A1LZU . . . F 6 120.67 110.775 160.294 1 84.12 ? C12 A1LZU 501 R 1 HETATM 5 C C13 A1LZU . . . F 6 116.282 109.833 158.726 1 84.12 ? C13 A1LZU 501 R 1 HETATM 6 C C2 A1LZU . . . F 6 115.607 107.012 160.588 1 84.12 ? C2 A1LZU 501 R 1 HETATM 7 C C3 A1LZU . . . F 6 114.633 106.948 161.763 1 84.12 ? C3 A1LZU 501 R 1 HETATM 8 C C4 A1LZU . . . F 6 116.933 107.627 160.986 1 84.12 ? C4 A1LZU 501 R 1 HETATM 9 C C5 A1LZU . . . F 6 117.661 108.451 160.125 1 84.12 ? C5 A1LZU 501 R 1 HETATM 10 C C6 A1LZU . . . F 6 118.891 109.015 160.471 1 84.12 ? C6 A1LZU 501 R 1 HETATM 11 C C7 A1LZU . . . F 6 119.378 108.733 161.745 1 84.12 ? C7 A1LZU 501 R 1 HETATM 12 C C8 A1LZU . . . F 6 118.688 107.926 162.621 1 84.12 ? C8 A1LZU 501 R 1 HETATM 13 C C9 A1LZU . . . F 6 117.481 107.381 162.242 1 84.12 ? C9 A1LZU 501 R 1 HETATM 14 O O1 A1LZU . . . F 6 117.134 108.704 158.87 1 84.12 ? O1 A1LZU 501 R 1 HETATM 15 O O2 A1LZU . . . F 6 115.462 109.784 157.589 1 84.12 ? O2 A1LZU 501 R 1 HETATM 16 O O3 A1LZU . . . F 6 113.52 110.415 156.139 1 84.12 ? O3 A1LZU 501 R 1 HETATM 17 O O4 A1LZU . . . F 6 113.465 110.873 158.617 1 84.12 ? O4 A1LZU 501 R 1 HETATM 18 O O5 A1LZU . . . F 6 115.003 112.2 157.123 1 84.12 ? O5 A1LZU 501 R 1 HETATM 19 P P1 A1LZU . . . F 6 114.297 110.88 157.352 1 84.12 ? P1 A1LZU 501 R 1 # _model_server_stats.io_time_ms 71 _model_server_stats.parse_time_ms 21 _model_server_stats.create_model_time_ms 8 _model_server_stats.query_time_ms 289 _model_server_stats.encode_time_ms 3 _model_server_stats.element_count 19 #