data_8YSU # _model_server_result.job_id MaHBC9rSok3M1ShRn1KRug _model_server_result.datetime_utc '2025-02-12 04:05:37' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 8ysu # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"E","auth_seq_id":404}' # _entry.id 8YSU # _exptl.entry_id 8YSU _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 24.305 _entity.id 3 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'MAGNESIUM ION' _entity.pdbx_number_of_molecules 2 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 100.415 _cell.angle_gamma 90 _cell.entry_id 8YSU _cell.length_a 35.363 _cell.length_b 111.506 _cell.length_c 46.981 _cell.Z_PDB 2 _cell.pdbx_unique_axis ? # _symmetry.entry_id 8YSU _symmetry.cell_setting ? _symmetry.Int_Tables_number 4 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 1 21 1' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 3 D N N ? 3 E N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order metalc ? metalc1 A OD2 ASP 78 A ASP 78 1_555 D MG MG . A MG 403 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.143 ? metalc ? metalc2 A OD1 ASP 78 A ASP 78 1_555 E MG MG . A MG 404 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.324 ? metalc ? metalc3 A OD2 ASP 78 A ASP 78 1_555 E MG MG . A MG 404 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.556 ? metalc ? metalc4 A OD1 ASP 80 A ASP 80 1_555 D MG MG . A MG 403 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.164 ? metalc ? metalc5 A OD2 ASP 80 A ASP 80 1_555 E MG MG . A MG 404 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.212 ? metalc ? metalc6 A OD2 ASP 129 A ASP 129 1_555 E MG MG . A MG 404 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.425 ? metalc ? metalc7 B O2A CTP . A CTP 401 1_555 D MG MG . A MG 403 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.245 ? metalc ? metalc8 B O2B CTP . A CTP 401 1_555 D MG MG . A MG 403 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.995 ? metalc ? metalc9 B O2G CTP . A CTP 401 1_555 D MG MG . A MG 403 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.156 ? metalc ? metalc10 B O2A CTP . A CTP 401 1_555 E MG MG . A MG 404 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.509 ? metalc ? metalc11 C O2' CTP . A CTP 402 1_555 E MG MG . A MG 404 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.683 ? metalc ? metalc12 C O3' CTP . A CTP 402 1_555 E MG MG . A MG 404 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.107 ? metalc ? metalc13 D MG MG . A MG 403 1_555 F O HOH . A HOH 516 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.23 ? # _chem_comp.formula 'Mg 2' _chem_comp.formula_weight 24.305 _chem_comp.id MG _chem_comp.mon_nstd_flag . _chem_comp.name 'MAGNESIUM ION' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # _atom_sites.entry_id 8YSU _atom_sites.fract_transf_matrix[1][1] 0.028278 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0.005198 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.008968 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.021642 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 CTP A 1 401 401 CTP CTP . C 2 CTP A 1 402 402 CTP CTP . D 3 MG A 1 403 411 MG MG . E 3 MG A 1 404 412 MG MG . F 4 HOH A 1 501 632 HOH HOH . F 4 HOH A 2 502 581 HOH HOH . F 4 HOH A 3 503 694 HOH HOH . F 4 HOH A 4 504 653 HOH HOH . F 4 HOH A 5 505 609 HOH HOH . F 4 HOH A 6 506 534 HOH HOH . F 4 HOH A 7 507 627 HOH HOH . F 4 HOH A 8 508 536 HOH HOH . F 4 HOH A 9 509 636 HOH HOH . F 4 HOH A 10 510 529 HOH HOH . F 4 HOH A 11 511 684 HOH HOH . F 4 HOH A 12 512 520 HOH HOH . F 4 HOH A 13 513 664 HOH HOH . F 4 HOH A 14 514 566 HOH HOH . F 4 HOH A 15 515 610 HOH HOH . F 4 HOH A 16 516 681 HOH HOH . F 4 HOH A 17 517 552 HOH HOH . F 4 HOH A 18 518 648 HOH HOH . F 4 HOH A 19 519 582 HOH HOH . F 4 HOH A 20 520 540 HOH HOH . F 4 HOH A 21 521 547 HOH HOH . F 4 HOH A 22 522 579 HOH HOH . F 4 HOH A 23 523 570 HOH HOH . F 4 HOH A 24 524 521 HOH HOH . F 4 HOH A 25 525 508 HOH HOH . F 4 HOH A 26 526 551 HOH HOH . F 4 HOH A 27 527 574 HOH HOH . F 4 HOH A 28 528 526 HOH HOH . F 4 HOH A 29 529 641 HOH HOH . F 4 HOH A 30 530 592 HOH HOH . F 4 HOH A 31 531 502 HOH HOH . F 4 HOH A 32 532 556 HOH HOH . F 4 HOH A 33 533 563 HOH HOH . F 4 HOH A 34 534 644 HOH HOH . F 4 HOH A 35 535 663 HOH HOH . F 4 HOH A 36 536 686 HOH HOH . F 4 HOH A 37 537 516 HOH HOH . F 4 HOH A 38 538 528 HOH HOH . F 4 HOH A 39 539 716 HOH HOH . F 4 HOH A 40 540 682 HOH HOH . F 4 HOH A 41 541 538 HOH HOH . F 4 HOH A 42 542 695 HOH HOH . F 4 HOH A 43 543 543 HOH HOH . F 4 HOH A 44 544 503 HOH HOH . F 4 HOH A 45 545 617 HOH HOH . F 4 HOH A 46 546 600 HOH HOH . F 4 HOH A 47 547 630 HOH HOH . F 4 HOH A 48 548 587 HOH HOH . F 4 HOH A 49 549 701 HOH HOH . F 4 HOH A 50 550 523 HOH HOH . F 4 HOH A 51 551 679 HOH HOH . F 4 HOH A 52 552 571 HOH HOH . F 4 HOH A 53 553 673 HOH HOH . F 4 HOH A 54 554 708 HOH HOH . F 4 HOH A 55 555 680 HOH HOH . F 4 HOH A 56 556 691 HOH HOH . F 4 HOH A 57 557 667 HOH HOH . F 4 HOH A 58 558 542 HOH HOH . F 4 HOH A 59 559 561 HOH HOH . F 4 HOH A 60 560 688 HOH HOH . F 4 HOH A 61 561 612 HOH HOH . F 4 HOH A 62 562 674 HOH HOH . F 4 HOH A 63 563 650 HOH HOH . F 4 HOH A 64 564 537 HOH HOH . F 4 HOH A 65 565 518 HOH HOH . F 4 HOH A 66 566 557 HOH HOH . F 4 HOH A 67 567 597 HOH HOH . F 4 HOH A 68 568 595 HOH HOH . F 4 HOH A 69 569 603 HOH HOH . F 4 HOH A 70 570 593 HOH HOH . F 4 HOH A 71 571 541 HOH HOH . F 4 HOH A 72 572 522 HOH HOH . F 4 HOH A 73 573 515 HOH HOH . F 4 HOH A 74 574 558 HOH HOH . F 4 HOH A 75 575 553 HOH HOH . F 4 HOH A 76 576 535 HOH HOH . F 4 HOH A 77 577 512 HOH HOH . F 4 HOH A 78 578 659 HOH HOH . F 4 HOH A 79 579 601 HOH HOH . F 4 HOH A 80 580 624 HOH HOH . F 4 HOH A 81 581 628 HOH HOH . F 4 HOH A 82 582 591 HOH HOH . F 4 HOH A 83 583 718 HOH HOH . F 4 HOH A 84 584 723 HOH HOH . F 4 HOH A 85 585 599 HOH HOH . F 4 HOH A 86 586 710 HOH HOH . F 4 HOH A 87 587 637 HOH HOH . F 4 HOH A 88 588 604 HOH HOH . F 4 HOH A 89 589 656 HOH HOH . F 4 HOH A 90 590 623 HOH HOH . F 4 HOH A 91 591 645 HOH HOH . F 4 HOH A 92 592 629 HOH HOH . F 4 HOH A 93 593 671 HOH HOH . F 4 HOH A 94 594 602 HOH HOH . F 4 HOH A 95 595 577 HOH HOH . F 4 HOH A 96 596 505 HOH HOH . F 4 HOH A 97 597 607 HOH HOH . F 4 HOH A 98 598 554 HOH HOH . F 4 HOH A 99 599 530 HOH HOH . F 4 HOH A 100 600 662 HOH HOH . F 4 HOH A 101 601 513 HOH HOH . F 4 HOH A 102 602 635 HOH HOH . F 4 HOH A 103 603 672 HOH HOH . F 4 HOH A 104 604 704 HOH HOH . F 4 HOH A 105 605 550 HOH HOH . F 4 HOH A 106 606 633 HOH HOH . F 4 HOH A 107 607 509 HOH HOH . F 4 HOH A 108 608 613 HOH HOH . F 4 HOH A 109 609 504 HOH HOH . F 4 HOH A 110 610 625 HOH HOH . F 4 HOH A 111 611 693 HOH HOH . F 4 HOH A 112 612 690 HOH HOH . F 4 HOH A 113 613 580 HOH HOH . F 4 HOH A 114 614 517 HOH HOH . F 4 HOH A 115 615 714 HOH HOH . F 4 HOH A 116 616 626 HOH HOH . F 4 HOH A 117 617 533 HOH HOH . F 4 HOH A 118 618 500 HOH HOH . F 4 HOH A 119 619 532 HOH HOH . F 4 HOH A 120 620 545 HOH HOH . F 4 HOH A 121 621 697 HOH HOH . F 4 HOH A 122 622 620 HOH HOH . F 4 HOH A 123 623 548 HOH HOH . F 4 HOH A 124 624 568 HOH HOH . F 4 HOH A 125 625 631 HOH HOH . F 4 HOH A 126 626 585 HOH HOH . F 4 HOH A 127 627 622 HOH HOH . F 4 HOH A 128 628 560 HOH HOH . F 4 HOH A 129 629 666 HOH HOH . F 4 HOH A 130 630 719 HOH HOH . F 4 HOH A 131 631 519 HOH HOH . F 4 HOH A 132 632 510 HOH HOH . F 4 HOH A 133 633 565 HOH HOH . F 4 HOH A 134 634 544 HOH HOH . F 4 HOH A 135 635 596 HOH HOH . F 4 HOH A 136 636 687 HOH HOH . F 4 HOH A 137 637 721 HOH HOH . F 4 HOH A 138 638 611 HOH HOH . F 4 HOH A 139 639 524 HOH HOH . F 4 HOH A 140 640 514 HOH HOH . F 4 HOH A 141 641 555 HOH HOH . F 4 HOH A 142 642 642 HOH HOH . F 4 HOH A 143 643 606 HOH HOH . F 4 HOH A 144 644 531 HOH HOH . F 4 HOH A 145 645 652 HOH HOH . F 4 HOH A 146 646 692 HOH HOH . F 4 HOH A 147 647 573 HOH HOH . F 4 HOH A 148 648 651 HOH HOH . F 4 HOH A 149 649 675 HOH HOH . F 4 HOH A 150 650 670 HOH HOH . F 4 HOH A 151 651 654 HOH HOH . F 4 HOH A 152 652 715 HOH HOH . F 4 HOH A 153 653 589 HOH HOH . F 4 HOH A 154 654 669 HOH HOH . F 4 HOH A 155 655 583 HOH HOH . F 4 HOH A 156 656 706 HOH HOH . F 4 HOH A 157 657 646 HOH HOH . F 4 HOH A 158 658 736 HOH HOH . F 4 HOH A 159 659 511 HOH HOH . F 4 HOH A 160 660 712 HOH HOH . F 4 HOH A 161 661 506 HOH HOH . F 4 HOH A 162 662 584 HOH HOH . F 4 HOH A 163 663 655 HOH HOH . F 4 HOH A 164 664 725 HOH HOH . F 4 HOH A 165 665 614 HOH HOH . F 4 HOH A 166 666 720 HOH HOH . F 4 HOH A 167 667 722 HOH HOH . F 4 HOH A 168 668 525 HOH HOH . F 4 HOH A 169 669 527 HOH HOH . F 4 HOH A 170 670 621 HOH HOH . F 4 HOH A 171 671 575 HOH HOH . F 4 HOH A 172 672 703 HOH HOH . F 4 HOH A 173 673 638 HOH HOH . F 4 HOH A 174 674 549 HOH HOH . F 4 HOH A 175 675 590 HOH HOH . F 4 HOH A 176 676 658 HOH HOH . F 4 HOH A 177 677 567 HOH HOH . F 4 HOH A 178 678 501 HOH HOH . F 4 HOH A 179 679 683 HOH HOH . F 4 HOH A 180 680 615 HOH HOH . F 4 HOH A 181 681 608 HOH HOH . F 4 HOH A 182 682 598 HOH HOH . F 4 HOH A 183 683 705 HOH HOH . F 4 HOH A 184 684 724 HOH HOH . F 4 HOH A 185 685 677 HOH HOH . F 4 HOH A 186 686 572 HOH HOH . F 4 HOH A 187 687 586 HOH HOH . F 4 HOH A 188 688 665 HOH HOH . F 4 HOH A 189 689 727 HOH HOH . F 4 HOH A 190 690 732 HOH HOH . F 4 HOH A 191 691 539 HOH HOH . F 4 HOH A 192 692 730 HOH HOH . F 4 HOH A 193 693 564 HOH HOH . F 4 HOH A 194 694 738 HOH HOH . F 4 HOH A 195 695 661 HOH HOH . F 4 HOH A 196 696 578 HOH HOH . F 4 HOH A 197 697 737 HOH HOH . F 4 HOH A 198 698 713 HOH HOH . F 4 HOH A 199 699 507 HOH HOH . F 4 HOH A 200 700 660 HOH HOH . F 4 HOH A 201 701 702 HOH HOH . F 4 HOH A 202 702 618 HOH HOH . F 4 HOH A 203 703 676 HOH HOH . F 4 HOH A 204 704 588 HOH HOH . F 4 HOH A 205 705 576 HOH HOH . F 4 HOH A 206 706 733 HOH HOH . F 4 HOH A 207 707 689 HOH HOH . F 4 HOH A 208 708 700 HOH HOH . F 4 HOH A 209 709 709 HOH HOH . F 4 HOH A 210 710 559 HOH HOH . F 4 HOH A 211 711 562 HOH HOH . F 4 HOH A 212 712 643 HOH HOH . F 4 HOH A 213 713 678 HOH HOH . F 4 HOH A 214 714 647 HOH HOH . F 4 HOH A 215 715 657 HOH HOH . F 4 HOH A 216 716 743 HOH HOH . F 4 HOH A 217 717 639 HOH HOH . F 4 HOH A 218 718 668 HOH HOH . F 4 HOH A 219 719 717 HOH HOH . F 4 HOH A 220 720 729 HOH HOH . F 4 HOH A 221 721 640 HOH HOH . F 4 HOH A 222 722 698 HOH HOH . F 4 HOH A 223 723 546 HOH HOH . F 4 HOH A 224 724 699 HOH HOH . F 4 HOH A 225 725 616 HOH HOH . F 4 HOH A 226 726 594 HOH HOH . F 4 HOH A 227 727 634 HOH HOH . F 4 HOH A 228 728 728 HOH HOH . F 4 HOH A 229 729 726 HOH HOH . F 4 HOH A 230 730 707 HOH HOH . F 4 HOH A 231 731 739 HOH HOH . F 4 HOH A 232 732 696 HOH HOH . F 4 HOH A 233 733 741 HOH HOH . F 4 HOH A 234 734 735 HOH HOH . F 4 HOH A 235 735 569 HOH HOH . F 4 HOH A 236 736 685 HOH HOH . F 4 HOH A 237 737 605 HOH HOH . F 4 HOH A 238 738 734 HOH HOH . F 4 HOH A 239 739 649 HOH HOH . F 4 HOH A 240 740 731 HOH HOH . F 4 HOH A 241 741 711 HOH HOH . F 4 HOH A 242 742 740 HOH HOH . F 4 HOH A 243 743 742 HOH HOH . F 4 HOH A 244 744 619 HOH HOH . # _atom_site.group_PDB HETATM _atom_site.id 1 _atom_site.type_symbol MG _atom_site.label_atom_id MG _atom_site.label_comp_id MG _atom_site.label_seq_id . _atom_site.label_alt_id . _atom_site.pdbx_PDB_ins_code . _atom_site.label_asym_id E _atom_site.label_entity_id 3 _atom_site.Cartn_x 14.687 _atom_site.Cartn_y 8.11 _atom_site.Cartn_z 7.749 _atom_site.occupancy 1 _atom_site.B_iso_or_equiv 17.37 _atom_site.pdbx_formal_charge 0 _atom_site.auth_atom_id MG _atom_site.auth_comp_id MG _atom_site.auth_seq_id 404 _atom_site.auth_asym_id A _atom_site.pdbx_PDB_model_num 1 # _model_server_stats.io_time_ms 10 _model_server_stats.parse_time_ms 12 _model_server_stats.create_model_time_ms 5 _model_server_stats.query_time_ms 332 _model_server_stats.encode_time_ms 2 _model_server_stats.element_count 1 #