data_8YSX # _model_server_result.job_id GJgcEizJ3q0-tKopaCOY8w _model_server_result.datetime_utc '2025-04-21 20:12:04' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 8ysx # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"DA","auth_seq_id":401}' # _entry.id 8YSX # _exptl.entry_id 8YSX _exptl.method 'ELECTRON MICROSCOPY' # _entity.details ? _entity.formula_weight 334.222 _entity.id 15 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description '[(~{R})-cyclohexyl-[(1-cyclohexyl-1,2,3-triazol-4-yl)carbonylamino]methyl]boronic acid' _entity.pdbx_number_of_molecules 4 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 8YSX _cell.length_a 1 _cell.length_b 1 _cell.length_c 1 _cell.Z_PDB ? _cell.pdbx_unique_axis ? # _symmetry.entry_id 8YSX _symmetry.cell_setting ? _symmetry.Int_Tables_number 1 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 1' # _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details 28-meric _pdbx_struct_assembly.oligomeric_count 28 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J,K,L,M,N,O,P,Q,R,S,T,U,V,W,X,Y,Z,AA,BA,CA,DA,EA,FA,GA,HA,IA,JA,KA,LA,MA,NA _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation ? _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 15 CA N N ? 15 DA N N ? 15 EA N N ? 15 FA N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order covale ? covale1 A OG1 THR 1 F THR 1 1_555 CA B1 A1L0D . F A1L0D 301 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.362 ? covale ? covale2 J OG1 THR 1 C THR 1 1_555 DA B1 A1L0D . C A1L0D 401 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.369 ? covale ? covale3 X OG1 THR 1 A THR 1 1_555 EA B1 A1L0D . A A1L0D 301 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.362 ? covale ? covale4 Z OG1 THR 1 D THR 1 1_555 FA B1 A1L0D . D A1L0D 401 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.369 ? # _chem_comp.formula 'C16 H27 B N4 O3' _chem_comp.formula_weight 334.222 _chem_comp.id A1L0D _chem_comp.mon_nstd_flag . _chem_comp.name '[(~{R})-cyclohexyl-[(1-cyclohexyl-1,2,3-triazol-4-yl)carbonylamino]methyl]boronic acid' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C10 C9 A1L0D sing 1 n n C10 C11 A1L0D sing 2 n n C9 C8 A1L0D sing 3 n n C8 C7 A1L0D sing 4 n n C11 C6 A1L0D sing 5 n n C6 C7 A1L0D sing 6 n n C6 N4 A1L0D sing 7 n n N4 N3 A1L0D sing 8 n y N4 C5 A1L0D sing 9 n y N3 N2 A1L0D doub 10 n y C5 C1 A1L0D doub 11 n y N2 C1 A1L0D sing 12 n y C1 C2 A1L0D sing 13 n n C2 O3 A1L0D doub 14 n n C2 N1 A1L0D sing 15 n n N1 C3 A1L0D sing 16 n n O2 B1 A1L0D sing 17 n n C12 C13 A1L0D sing 18 n n C12 C4 A1L0D sing 19 n n C3 B1 A1L0D sing 20 n n C3 C4 A1L0D sing 21 n n O1 B1 A1L0D sing 22 n n C13 C14 A1L0D sing 23 n n C14 C15 A1L0D sing 24 n n C4 C16 A1L0D sing 25 n n C16 C15 A1L0D sing 26 n n C4 H1 A1L0D sing 27 n n C5 H2 A1L0D sing 28 n n C6 H3 A1L0D sing 29 n n C8 H4 A1L0D sing 30 n n C8 H5 A1L0D sing 31 n n N1 H6 A1L0D sing 32 n n C3 H7 A1L0D sing 33 n n O1 H8 A1L0D sing 34 n n O2 H9 A1L0D sing 35 n n C7 H10 A1L0D sing 36 n n C7 H11 A1L0D sing 37 n n C9 H12 A1L0D sing 38 n n C9 H13 A1L0D sing 39 n n C10 H14 A1L0D sing 40 n n C10 H15 A1L0D sing 41 n n C11 H16 A1L0D sing 42 n n C11 H17 A1L0D sing 43 n n C12 H18 A1L0D sing 44 n n C12 H19 A1L0D sing 45 n n C13 H20 A1L0D sing 46 n n C13 H21 A1L0D sing 47 n n C14 H22 A1L0D sing 48 n n C14 H23 A1L0D sing 49 n n C15 H24 A1L0D sing 50 n n C15 H25 A1L0D sing 51 n n C16 H26 A1L0D sing 52 n n C16 H27 A1L0D sing 53 n n # _atom_sites.entry_id 8YSX _atom_sites.fract_transf_matrix[1][1] 1 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 1 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 1 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code CA 15 A1L0D F 1 301 201 A1L0D L0D . DA 15 A1L0D C 1 401 301 A1L0D L0D . EA 15 A1L0D A 1 301 201 A1L0D L0D . FA 15 A1L0D D 1 401 301 A1L0D L0D . GA 16 HOH F 1 401 301 HOH HOH . GA 16 HOH F 2 402 302 HOH HOH . GA 16 HOH F 3 403 303 HOH HOH . HA 16 HOH C 1 501 401 HOH HOH . HA 16 HOH C 2 502 402 HOH HOH . IA 16 HOH X 1 301 301 HOH HOH . JA 16 HOH E 1 301 301 HOH HOH . JA 16 HOH E 2 302 302 HOH HOH . KA 16 HOH B 1 301 301 HOH HOH . KA 16 HOH B 2 302 302 HOH HOH . LA 16 HOH A 1 401 301 HOH HOH . LA 16 HOH A 2 402 302 HOH HOH . LA 16 HOH A 3 403 303 HOH HOH . MA 16 HOH D 1 501 401 HOH HOH . MA 16 HOH D 2 502 402 HOH HOH . NA 16 HOH S 1 301 301 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C2 A1L0D . . . DA 15 155.988 169.424 126.341 1 44.84 ? C2 A1L0D 401 C 1 HETATM 2 C C4 A1L0D . . . DA 15 157.858 169.853 123.407 1 48.36 ? C4 A1L0D 401 C 1 HETATM 3 C C5 A1L0D . . . DA 15 155.776 169.047 128.872 1 53.09 ? C5 A1L0D 401 C 1 HETATM 4 C C6 A1L0D . . . DA 15 156.457 168.281 131.211 1 55.6 ? C6 A1L0D 401 C 1 HETATM 5 C C8 A1L0D . . . DA 15 156.731 169.443 133.448 1 75.37 ? C8 A1L0D 401 C 1 HETATM 6 N N1 A1L0D . . . DA 15 156.677 168.93 125.279 1 43.91 ? N1 A1L0D 401 C 1 HETATM 7 N N3 A1L0D . . . DA 15 157.76 168.001 129.12 1 37.94 ? N3 A1L0D 401 C 1 HETATM 8 C C1 A1L0D . . . DA 15 156.429 168.975 127.666 1 45.27 ? C1 A1L0D 401 C 1 HETATM 9 C C3 A1L0D . . . DA 15 156.494 169.464 123.944 1 57.92 ? C3 A1L0D 401 C 1 HETATM 10 B B1 A1L0D . . . DA 15 155.673 168.469 122.951 1 65.42 ? B1 A1L0D 401 C 1 HETATM 11 O O2 A1L0D . . . DA 15 156.264 167.227 122.925 1 45.02 ? O2 A1L0D 401 C 1 HETATM 12 O O3 A1L0D . . . DA 15 155.101 170.291 126.26 1 43.3 ? O3 A1L0D 401 C 1 HETATM 13 N N2 A1L0D . . . DA 15 157.596 168.292 127.862 1 41.97 ? N2 A1L0D 401 C 1 HETATM 14 N N4 A1L0D . . . DA 15 156.626 168.431 129.753 1 48.01 ? N4 A1L0D 401 C 1 HETATM 15 C C7 A1L0D . . . DA 15 156.931 169.543 131.934 1 70.17 ? C7 A1L0D 401 C 1 HETATM 16 C C9 A1L0D . . . DA 15 155.269 169.152 133.787 1 84.25 ? C9 A1L0D 401 C 1 HETATM 17 C C10 A1L0D . . . DA 15 154.73 167.924 133.063 1 69.55 ? C10 A1L0D 401 C 1 HETATM 18 C C11 A1L0D . . . DA 15 155.013 167.929 131.56 1 68.47 ? C11 A1L0D 401 C 1 HETATM 19 C C12 A1L0D . . . DA 15 158.836 168.691 123.54 1 45.05 ? C12 A1L0D 401 C 1 HETATM 20 C C13 A1L0D . . . DA 15 160.254 169.068 123.045 1 54.24 ? C13 A1L0D 401 C 1 HETATM 21 C C14 A1L0D . . . DA 15 160.815 170.364 123.685 1 47.05 ? C14 A1L0D 401 C 1 HETATM 22 C C15 A1L0D . . . DA 15 159.802 171.516 123.758 1 50.43 ? C15 A1L0D 401 C 1 HETATM 23 C C16 A1L0D . . . DA 15 158.37 171.095 124.145 1 39.6 ? C16 A1L0D 401 C 1 # _model_server_stats.io_time_ms 24 _model_server_stats.parse_time_ms 10 _model_server_stats.create_model_time_ms 80 _model_server_stats.query_time_ms 331 _model_server_stats.encode_time_ms 2 _model_server_stats.element_count 23 #