data_8YTE
#
_model_server_result.job_id            D1V1qxB46d0sI1zdFPphWw 
_model_server_result.datetime_utc      '2024-10-30 01:27:08' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          8yte 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"H","auth_seq_id":101}' 
#
_entry.id    8YTE 
#
_exptl.entry_id    8YTE 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              74.082 
_entity.id                          4 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            AMINOMETHYLAMIDE 
_entity.pdbx_number_of_molecules    2 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          90 
_cell.angle_gamma         90 
_cell.entry_id            8YTE 
_cell.length_a            51.68 
_cell.length_b            66.972 
_cell.length_c            79.889 
_cell.Z_PDB               8 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 8YTE 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        19 
_symmetry.space_group_name_Hall    ? 
_symmetry.space_group_name_H-M     'P 21 21 21' 
#
loop_
_pdbx_struct_assembly.method_details
_pdbx_struct_assembly.oligomeric_details
_pdbx_struct_assembly.oligomeric_count
_pdbx_struct_assembly.details
_pdbx_struct_assembly.id
PISA dimeric 2 author_and_software_defined_assembly 1 
PISA dimeric 2 author_and_software_defined_assembly 2 
#
loop_
_pdbx_struct_assembly_gen.asym_id_list
_pdbx_struct_assembly_gen.assembly_id
_pdbx_struct_assembly_gen.oper_expression
A,B,E,F,G,H,I,P,Q 1 1 
C,D,J,K,L,M,N,O,R,S 2 1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    x,y,z 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
loop_
_struct_asym.details
_struct_asym.entity_id
_struct_asym.id
_struct_asym.pdbx_modified
_struct_asym.pdbx_blank_PDB_chainid_flag
? 4 H N N 
? 4 N N N 
#
loop_
_struct_conn.conn_type_id
_struct_conn.details
_struct_conn.id
_struct_conn.ptnr1_label_asym_id
_struct_conn.ptnr1_label_atom_id
_struct_conn.ptnr1_label_comp_id
_struct_conn.ptnr1_label_seq_id
_struct_conn.ptnr1_auth_asym_id
_struct_conn.ptnr1_auth_comp_id
_struct_conn.ptnr1_auth_seq_id
_struct_conn.ptnr1_symmetry
_struct_conn.ptnr2_label_asym_id
_struct_conn.ptnr2_label_atom_id
_struct_conn.ptnr2_label_comp_id
_struct_conn.ptnr2_label_seq_id
_struct_conn.ptnr2_auth_asym_id
_struct_conn.ptnr2_auth_comp_id
_struct_conn.ptnr2_auth_seq_id
_struct_conn.ptnr2_symmetry
_struct_conn.pdbx_ptnr1_PDB_ins_code
_struct_conn.pdbx_ptnr1_label_alt_id
_struct_conn.pdbx_ptnr1_standard_comp_id
_struct_conn.pdbx_ptnr2_PDB_ins_code
_struct_conn.pdbx_ptnr2_label_alt_id
_struct_conn.pdbx_ptnr3_PDB_ins_code
_struct_conn.pdbx_ptnr3_label_alt_id
_struct_conn.pdbx_ptnr3_label_asym_id
_struct_conn.pdbx_ptnr3_label_atom_id
_struct_conn.pdbx_ptnr3_label_comp_id
_struct_conn.pdbx_ptnr3_label_seq_id
_struct_conn.pdbx_PDB_id
_struct_conn.pdbx_dist_value
_struct_conn.pdbx_value_order
disulf ? disulf1 A SG CYS 20 A CYS 300 1_555 A SG CYS 65 A CYS 345 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.045 ? 
disulf ? disulf2 C SG CYS 20 C CYS 300 1_555 C SG CYS 65 C CYS 345 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.05 ? 
covale ? covale1 B C CYS 14 B CYS 13 1_555 H N2 GM1 . B GM1 101 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.281 ? 
covale ? covale2 D C CYS 14 D CYS 13 1_555 N N2 GM1 . D GM1 101 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.265 ? 
#
_chem_comp.formula           'C2 H6 N2 O' 
_chem_comp.formula_weight    74.082 
_chem_comp.id                GM1 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              AMINOMETHYLAMIDE 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     GLYCINAMID 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
C1 N1 GM1 sing 138 n n 
C1 O1 GM1 doub 139 n n 
C1 C2 GM1 sing 140 n n 
N1 HN11 GM1 sing 141 n n 
N1 HN12 GM1 sing 142 n n 
C2 N2 GM1 sing 143 n n 
C2 H21 GM1 sing 144 n n 
C2 H22 GM1 sing 145 n n 
N2 HN21 GM1 sing 146 n n 
N2 HN22 GM1 sing 147 n n 
#
_atom_sites.entry_id                     8YTE 
_atom_sites.fract_transf_matrix[1][1]    0.01935 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.014932 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.012517 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
E 3 EDO A 1 401 1 EDO EDO . 
F 3 EDO A 1 402 4 EDO EDO . 
G 3 EDO A 1 403 9 EDO EDO . 
H 4 GM1 B 1 101 14 GM1 GM1 . 
I 3 EDO B 1 102 3 EDO EDO . 
J 3 EDO C 1 401 5 EDO EDO . 
K 3 EDO C 1 402 6 EDO EDO . 
L 3 EDO C 1 403 7 EDO EDO . 
M 3 EDO C 1 404 8 EDO EDO . 
N 4 GM1 D 1 101 14 GM1 GM1 . 
O 3 EDO D 1 102 2 EDO EDO . 
P 5 HOH A 1 501 84 HOH HOH . 
P 5 HOH A 2 502 65 HOH HOH . 
P 5 HOH A 3 503 17 HOH HOH . 
P 5 HOH A 4 504 8 HOH HOH . 
P 5 HOH A 5 505 2 HOH HOH . 
P 5 HOH A 6 506 9 HOH HOH . 
P 5 HOH A 7 507 38 HOH HOH . 
P 5 HOH A 8 508 12 HOH HOH . 
P 5 HOH A 9 509 23 HOH HOH . 
P 5 HOH A 10 510 55 HOH HOH . 
P 5 HOH A 11 511 88 HOH HOH . 
P 5 HOH A 12 512 42 HOH HOH . 
P 5 HOH A 13 513 89 HOH HOH . 
P 5 HOH A 14 514 47 HOH HOH . 
P 5 HOH A 15 515 85 HOH HOH . 
P 5 HOH A 16 516 63 HOH HOH . 
P 5 HOH A 17 517 72 HOH HOH . 
P 5 HOH A 18 518 66 HOH HOH . 
P 5 HOH A 19 519 1 HOH HOH . 
P 5 HOH A 20 520 67 HOH HOH . 
P 5 HOH A 21 521 90 HOH HOH . 
P 5 HOH A 22 522 27 HOH HOH . 
P 5 HOH A 23 523 33 HOH HOH . 
P 5 HOH A 24 524 68 HOH HOH . 
P 5 HOH A 25 525 57 HOH HOH . 
P 5 HOH A 26 526 20 HOH HOH . 
P 5 HOH A 27 527 44 HOH HOH . 
P 5 HOH A 28 528 86 HOH HOH . 
P 5 HOH A 29 529 37 HOH HOH . 
P 5 HOH A 30 530 43 HOH HOH . 
P 5 HOH A 31 531 5 HOH HOH . 
P 5 HOH A 32 532 87 HOH HOH . 
P 5 HOH A 33 533 3 HOH HOH . 
P 5 HOH A 34 534 70 HOH HOH . 
P 5 HOH A 35 535 14 HOH HOH . 
P 5 HOH A 36 536 56 HOH HOH . 
P 5 HOH A 37 537 25 HOH HOH . 
P 5 HOH A 38 538 16 HOH HOH . 
P 5 HOH A 39 539 40 HOH HOH . 
P 5 HOH A 40 540 71 HOH HOH . 
P 5 HOH A 41 541 32 HOH HOH . 
P 5 HOH A 42 542 83 HOH HOH . 
P 5 HOH A 43 543 91 HOH HOH . 
P 5 HOH A 44 544 59 HOH HOH . 
P 5 HOH A 45 545 7 HOH HOH . 
P 5 HOH A 46 546 35 HOH HOH . 
Q 5 HOH B 1 201 18 HOH HOH . 
Q 5 HOH B 2 202 58 HOH HOH . 
Q 5 HOH B 3 203 61 HOH HOH . 
Q 5 HOH B 4 204 29 HOH HOH . 
Q 5 HOH B 5 205 31 HOH HOH . 
Q 5 HOH B 6 206 49 HOH HOH . 
Q 5 HOH B 7 207 73 HOH HOH . 
R 5 HOH C 1 501 75 HOH HOH . 
R 5 HOH C 2 502 19 HOH HOH . 
R 5 HOH C 3 503 21 HOH HOH . 
R 5 HOH C 4 504 6 HOH HOH . 
R 5 HOH C 5 505 62 HOH HOH . 
R 5 HOH C 6 506 46 HOH HOH . 
R 5 HOH C 7 507 48 HOH HOH . 
R 5 HOH C 8 508 15 HOH HOH . 
R 5 HOH C 9 509 53 HOH HOH . 
R 5 HOH C 10 510 24 HOH HOH . 
R 5 HOH C 11 511 50 HOH HOH . 
R 5 HOH C 12 512 10 HOH HOH . 
R 5 HOH C 13 513 45 HOH HOH . 
R 5 HOH C 14 514 74 HOH HOH . 
R 5 HOH C 15 515 76 HOH HOH . 
R 5 HOH C 16 516 54 HOH HOH . 
R 5 HOH C 17 517 82 HOH HOH . 
R 5 HOH C 18 518 41 HOH HOH . 
R 5 HOH C 19 519 81 HOH HOH . 
R 5 HOH C 20 520 51 HOH HOH . 
R 5 HOH C 21 521 13 HOH HOH . 
R 5 HOH C 22 522 78 HOH HOH . 
R 5 HOH C 23 523 79 HOH HOH . 
R 5 HOH C 24 524 30 HOH HOH . 
R 5 HOH C 25 525 26 HOH HOH . 
R 5 HOH C 26 526 4 HOH HOH . 
R 5 HOH C 27 527 39 HOH HOH . 
R 5 HOH C 28 528 28 HOH HOH . 
R 5 HOH C 29 529 11 HOH HOH . 
R 5 HOH C 30 530 77 HOH HOH . 
R 5 HOH C 31 531 64 HOH HOH . 
S 5 HOH D 1 201 52 HOH HOH . 
S 5 HOH D 2 202 22 HOH HOH . 
S 5 HOH D 3 203 69 HOH HOH . 
S 5 HOH D 4 204 80 HOH HOH . 
S 5 HOH D 5 205 34 HOH HOH . 
S 5 HOH D 6 206 36 HOH HOH . 
S 5 HOH D 7 207 60 HOH HOH . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 C C1 GM1 . . . H 4 14.485 -13.238 32.021 1 25.94 ? C1 GM1 101 B 1 
HETATM 2 N N1 GM1 . . . H 4 15.685 -13.675 31.658 1 26.35 ? N1 GM1 101 B 1 
HETATM 3 O O1 GM1 . . . H 4 14.339 -12.333 32.833 1 26.51 ? O1 GM1 101 B 1 
HETATM 4 C C2 GM1 . . . H 4 13.313 -13.93 31.358 1 25.5 ? C2 GM1 101 B 1 
HETATM 5 N N2 GM1 . . . H 4 12.078 -13.171 31.448 1 24.74 ? N2 GM1 101 B 1 
#
_model_server_stats.io_time_ms              9 
_model_server_stats.parse_time_ms           14 
_model_server_stats.create_model_time_ms    18 
_model_server_stats.query_time_ms           296 
_model_server_stats.encode_time_ms          9 
_model_server_stats.element_count           5 
#