data_8YTG # _model_server_result.job_id 0LAX8s6Z_PJOZe5Vnoe5-Q _model_server_result.datetime_utc '2024-11-21 09:23:44' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 8ytg # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"D","auth_seq_id":602}' # _entry.id 8YTG # _exptl.entry_id 8YTG _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 65.409 _entity.id 3 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'ZINC ION' _entity.pdbx_number_of_molecules 3 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 108.21 _cell.angle_gamma 90 _cell.entry_id 8YTG _cell.length_a 26.733 _cell.length_b 39.868 _cell.length_c 36.247 _cell.Z_PDB 2 _cell.pdbx_unique_axis ? # _symmetry.entry_id 8YTG _symmetry.cell_setting ? _symmetry.Int_Tables_number 4 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 1 21 1' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 3 C N N ? 3 D N N ? 3 E N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order metalc ? metalc1 A SG CYS 11 A CYS 506 1_555 C ZN ZN . A ZN 601 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.346 ? metalc ? metalc2 A SG CYS 14 A CYS 509 1_555 C ZN ZN . A ZN 601 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.295 ? metalc ? metalc3 A SG CYS 26 A CYS 521 1_555 D ZN ZN . A ZN 602 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.334 ? metalc ? metalc4 A ND1 HIS 32 A HIS 527 1_555 D ZN ZN . A ZN 602 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.09 ? metalc ? metalc5 A SG CYS 35 A CYS 530 1_555 C ZN ZN . A ZN 601 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.327 ? metalc ? metalc6 A SG CYS 38 A CYS 533 1_555 C ZN ZN . A ZN 601 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.293 ? metalc ? metalc7 A SG CYS 54 A CYS 549 1_555 D ZN ZN . A ZN 602 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.387 ? metalc ? metalc8 A SG CYS 60 A CYS 555 1_555 D ZN ZN . A ZN 602 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.316 ? # _chem_comp.formula 'Zn 2' _chem_comp.formula_weight 65.409 _chem_comp.id ZN _chem_comp.mon_nstd_flag . _chem_comp.name 'ZINC ION' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # _atom_sites.entry_id 8YTG _atom_sites.fract_transf_matrix[1][1] 0.037407 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0.012306 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.025083 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.029043 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 3 ZN A 1 601 1 ZN ZN . D 3 ZN A 1 602 2 ZN ZN . E 3 ZN A 1 603 3 ZN ZN . F 4 HOH A 1 701 143 HOH HOH . F 4 HOH A 2 702 132 HOH HOH . F 4 HOH A 3 703 126 HOH HOH . F 4 HOH A 4 704 151 HOH HOH . F 4 HOH A 5 705 69 HOH HOH . F 4 HOH A 6 706 110 HOH HOH . F 4 HOH A 7 707 95 HOH HOH . F 4 HOH A 8 708 59 HOH HOH . F 4 HOH A 9 709 27 HOH HOH . F 4 HOH A 10 710 65 HOH HOH . F 4 HOH A 11 711 42 HOH HOH . F 4 HOH A 12 712 33 HOH HOH . F 4 HOH A 13 713 46 HOH HOH . F 4 HOH A 14 714 92 HOH HOH . F 4 HOH A 15 715 103 HOH HOH . F 4 HOH A 16 716 5 HOH HOH . F 4 HOH A 17 717 23 HOH HOH . F 4 HOH A 18 718 16 HOH HOH . F 4 HOH A 19 719 97 HOH HOH . F 4 HOH A 20 720 7 HOH HOH . F 4 HOH A 21 721 74 HOH HOH . F 4 HOH A 22 722 88 HOH HOH . F 4 HOH A 23 723 35 HOH HOH . F 4 HOH A 24 724 100 HOH HOH . F 4 HOH A 25 725 119 HOH HOH . F 4 HOH A 26 726 114 HOH HOH . F 4 HOH A 27 727 24 HOH HOH . F 4 HOH A 28 728 75 HOH HOH . F 4 HOH A 29 729 152 HOH HOH . F 4 HOH A 30 730 2 HOH HOH . F 4 HOH A 31 731 149 HOH HOH . F 4 HOH A 32 732 120 HOH HOH . F 4 HOH A 33 733 41 HOH HOH . F 4 HOH A 34 734 1 HOH HOH . F 4 HOH A 35 735 62 HOH HOH . F 4 HOH A 36 736 29 HOH HOH . F 4 HOH A 37 737 93 HOH HOH . F 4 HOH A 38 738 47 HOH HOH . F 4 HOH A 39 739 137 HOH HOH . F 4 HOH A 40 740 51 HOH HOH . F 4 HOH A 41 741 15 HOH HOH . F 4 HOH A 42 742 66 HOH HOH . F 4 HOH A 43 743 86 HOH HOH . F 4 HOH A 44 744 70 HOH HOH . F 4 HOH A 45 745 6 HOH HOH . F 4 HOH A 46 746 4 HOH HOH . F 4 HOH A 47 747 30 HOH HOH . F 4 HOH A 48 748 123 HOH HOH . F 4 HOH A 49 749 8 HOH HOH . F 4 HOH A 50 750 79 HOH HOH . F 4 HOH A 51 751 142 HOH HOH . F 4 HOH A 52 752 45 HOH HOH . F 4 HOH A 53 753 25 HOH HOH . F 4 HOH A 54 754 131 HOH HOH . F 4 HOH A 55 755 11 HOH HOH . F 4 HOH A 56 756 9 HOH HOH . F 4 HOH A 57 757 53 HOH HOH . F 4 HOH A 58 758 63 HOH HOH . F 4 HOH A 59 759 91 HOH HOH . F 4 HOH A 60 760 128 HOH HOH . F 4 HOH A 61 761 18 HOH HOH . F 4 HOH A 62 762 10 HOH HOH . F 4 HOH A 63 763 116 HOH HOH . F 4 HOH A 64 764 28 HOH HOH . F 4 HOH A 65 765 14 HOH HOH . F 4 HOH A 66 766 13 HOH HOH . F 4 HOH A 67 767 87 HOH HOH . F 4 HOH A 68 768 89 HOH HOH . F 4 HOH A 69 769 57 HOH HOH . F 4 HOH A 70 770 36 HOH HOH . F 4 HOH A 71 771 73 HOH HOH . F 4 HOH A 72 772 54 HOH HOH . F 4 HOH A 73 773 113 HOH HOH . F 4 HOH A 74 774 12 HOH HOH . F 4 HOH A 75 775 22 HOH HOH . F 4 HOH A 76 776 104 HOH HOH . F 4 HOH A 77 777 109 HOH HOH . F 4 HOH A 78 778 44 HOH HOH . F 4 HOH A 79 779 49 HOH HOH . F 4 HOH A 80 780 94 HOH HOH . F 4 HOH A 81 781 21 HOH HOH . F 4 HOH A 82 782 34 HOH HOH . F 4 HOH A 83 783 127 HOH HOH . F 4 HOH A 84 784 156 HOH HOH . F 4 HOH A 85 785 90 HOH HOH . F 4 HOH A 86 786 101 HOH HOH . F 4 HOH A 87 787 107 HOH HOH . F 4 HOH A 88 788 56 HOH HOH . F 4 HOH A 89 789 96 HOH HOH . F 4 HOH A 90 790 78 HOH HOH . F 4 HOH A 91 791 71 HOH HOH . F 4 HOH A 92 792 48 HOH HOH . F 4 HOH A 93 793 146 HOH HOH . F 4 HOH A 94 794 52 HOH HOH . F 4 HOH A 95 795 80 HOH HOH . F 4 HOH A 96 796 147 HOH HOH . F 4 HOH A 97 797 115 HOH HOH . F 4 HOH A 98 798 98 HOH HOH . F 4 HOH A 99 799 37 HOH HOH . F 4 HOH A 100 800 83 HOH HOH . F 4 HOH A 101 801 118 HOH HOH . F 4 HOH A 102 802 133 HOH HOH . F 4 HOH A 103 803 106 HOH HOH . F 4 HOH A 104 804 60 HOH HOH . F 4 HOH A 105 805 111 HOH HOH . F 4 HOH A 106 806 125 HOH HOH . F 4 HOH A 107 807 72 HOH HOH . F 4 HOH A 108 808 155 HOH HOH . F 4 HOH A 109 809 81 HOH HOH . F 4 HOH A 110 810 58 HOH HOH . F 4 HOH A 111 811 108 HOH HOH . F 4 HOH A 112 812 148 HOH HOH . F 4 HOH A 113 813 40 HOH HOH . F 4 HOH A 114 814 144 HOH HOH . F 4 HOH A 115 815 32 HOH HOH . F 4 HOH A 116 816 121 HOH HOH . F 4 HOH A 117 817 26 HOH HOH . F 4 HOH A 118 818 99 HOH HOH . F 4 HOH A 119 819 31 HOH HOH . F 4 HOH A 120 820 105 HOH HOH . F 4 HOH A 121 821 39 HOH HOH . F 4 HOH A 122 822 112 HOH HOH . F 4 HOH A 123 823 141 HOH HOH . F 4 HOH A 124 824 61 HOH HOH . F 4 HOH A 125 825 82 HOH HOH . F 4 HOH A 126 826 139 HOH HOH . F 4 HOH A 127 827 77 HOH HOH . F 4 HOH A 128 828 117 HOH HOH . F 4 HOH A 129 829 102 HOH HOH . F 4 HOH A 130 830 50 HOH HOH . F 4 HOH A 131 831 157 HOH HOH . F 4 HOH A 132 832 153 HOH HOH . F 4 HOH A 133 833 55 HOH HOH . F 4 HOH A 134 834 158 HOH HOH . F 4 HOH A 135 835 76 HOH HOH . F 4 HOH A 136 836 67 HOH HOH . F 4 HOH A 137 837 84 HOH HOH . F 4 HOH A 138 838 135 HOH HOH . F 4 HOH A 139 839 68 HOH HOH . F 4 HOH A 140 840 154 HOH HOH . F 4 HOH A 141 841 124 HOH HOH . F 4 HOH A 142 842 134 HOH HOH . F 4 HOH A 143 843 130 HOH HOH . G 4 HOH B 1 101 122 HOH HOH . G 4 HOH B 2 102 43 HOH HOH . G 4 HOH B 3 103 3 HOH HOH . G 4 HOH B 4 104 64 HOH HOH . G 4 HOH B 5 105 38 HOH HOH . G 4 HOH B 6 106 20 HOH HOH . G 4 HOH B 7 107 150 HOH HOH . G 4 HOH B 8 108 17 HOH HOH . G 4 HOH B 9 109 85 HOH HOH . G 4 HOH B 10 110 138 HOH HOH . G 4 HOH B 11 111 145 HOH HOH . G 4 HOH B 12 112 140 HOH HOH . G 4 HOH B 13 113 129 HOH HOH . G 4 HOH B 14 114 136 HOH HOH . G 4 HOH B 15 115 19 HOH HOH . # _atom_site.group_PDB HETATM _atom_site.id 1 _atom_site.type_symbol ZN _atom_site.label_atom_id ZN _atom_site.label_comp_id ZN _atom_site.label_seq_id . _atom_site.label_alt_id . _atom_site.pdbx_PDB_ins_code . _atom_site.label_asym_id D _atom_site.label_entity_id 3 _atom_site.Cartn_x 2.755 _atom_site.Cartn_y 2.977 _atom_site.Cartn_z 7.433 _atom_site.occupancy 1 _atom_site.B_iso_or_equiv 7 _atom_site.pdbx_formal_charge ? _atom_site.auth_atom_id ZN _atom_site.auth_comp_id ZN _atom_site.auth_seq_id 602 _atom_site.auth_asym_id A _atom_site.pdbx_PDB_model_num 1 # _model_server_stats.io_time_ms 9 _model_server_stats.parse_time_ms 13 _model_server_stats.create_model_time_ms 2 _model_server_stats.query_time_ms 282 _model_server_stats.encode_time_ms 5 _model_server_stats.element_count 1 #