data_8YTK
#
_model_server_result.job_id            EFtQ7crGnK7rA5iKliXhgQ 
_model_server_result.datetime_utc      '2025-07-12 23:45:52' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          8ytk 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"G","auth_seq_id":1602}' 
#
_entry.id    8YTK 
#
_exptl.entry_id    8YTK 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              62.068 
_entity.id                          3 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            1,2-ETHANEDIOL 
_entity.pdbx_number_of_molecules    3 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          108.629 
_cell.angle_gamma         90 
_cell.entry_id            8YTK 
_cell.length_a            71.602 
_cell.length_b            92.157 
_cell.length_c            86.621 
_cell.Z_PDB               4 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 8YTK 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        4 
_symmetry.space_group_name_Hall    ? 
_symmetry.space_group_name_H-M     'P 1 21 1' 
#
_pdbx_struct_assembly.method_details        ? 
_pdbx_struct_assembly.oligomeric_details    dimeric 
_pdbx_struct_assembly.oligomeric_count      2 
_pdbx_struct_assembly.details               author_and_software_defined_assembly 
_pdbx_struct_assembly.id                    1 
#
_pdbx_struct_assembly_gen.asym_id_list       A,B,C,D,E,F,G,H,I 
_pdbx_struct_assembly_gen.assembly_id        1 
_pdbx_struct_assembly_gen.oper_expression    1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    x,y,z 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
loop_
_struct_asym.details
_struct_asym.entity_id
_struct_asym.id
_struct_asym.pdbx_modified
_struct_asym.pdbx_blank_PDB_chainid_flag
? 3 D N N 
? 3 E N N 
? 3 G N N 
#
_struct_conn.conn_type_id                   disulf 
_struct_conn.details                        ? 
_struct_conn.id                             disulf1 
_struct_conn.ptnr1_label_asym_id            A 
_struct_conn.ptnr1_label_atom_id            SG 
_struct_conn.ptnr1_label_comp_id            CYS 
_struct_conn.ptnr1_label_seq_id             465 
_struct_conn.ptnr1_auth_asym_id             A 
_struct_conn.ptnr1_auth_comp_id             CYS 
_struct_conn.ptnr1_auth_seq_id              1453 
_struct_conn.ptnr1_symmetry                 1_555 
_struct_conn.ptnr2_label_asym_id            A 
_struct_conn.ptnr2_label_atom_id            SG 
_struct_conn.ptnr2_label_comp_id            CYS 
_struct_conn.ptnr2_label_seq_id             507 
_struct_conn.ptnr2_auth_asym_id             A 
_struct_conn.ptnr2_auth_comp_id             CYS 
_struct_conn.ptnr2_auth_seq_id              1495 
_struct_conn.ptnr2_symmetry                 1_555 
_struct_conn.pdbx_ptnr1_PDB_ins_code        ? 
_struct_conn.pdbx_ptnr1_label_alt_id        ? 
_struct_conn.pdbx_ptnr1_standard_comp_id    ? 
_struct_conn.pdbx_ptnr2_PDB_ins_code        ? 
_struct_conn.pdbx_ptnr2_label_alt_id        ? 
_struct_conn.pdbx_ptnr3_PDB_ins_code        ? 
_struct_conn.pdbx_ptnr3_label_alt_id        ? 
_struct_conn.pdbx_ptnr3_label_asym_id       ? 
_struct_conn.pdbx_ptnr3_label_atom_id       ? 
_struct_conn.pdbx_ptnr3_label_comp_id       ? 
_struct_conn.pdbx_ptnr3_label_seq_id        ? 
_struct_conn.pdbx_PDB_id                    ? 
_struct_conn.pdbx_dist_value                2.392 
_struct_conn.pdbx_value_order               ? 
#
_chem_comp.formula           'C2 H6 O2' 
_chem_comp.formula_weight    62.068 
_chem_comp.id                EDO 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              1,2-ETHANEDIOL 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     'ETHYLENE GLYCOL' 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
C1 O1 EDO sing 83 n n 
C1 C2 EDO sing 84 n n 
C1 H11 EDO sing 85 n n 
C1 H12 EDO sing 86 n n 
O1 HO1 EDO sing 87 n n 
C2 O2 EDO sing 88 n n 
C2 H21 EDO sing 89 n n 
C2 H22 EDO sing 90 n n 
O2 HO2 EDO sing 91 n n 
#
_atom_sites.entry_id                     8YTK 
_atom_sites.fract_transf_matrix[1][1]    0.013966 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0.004708 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.010851 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.012183 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
C 2 W2H A 1 1601 1 W2H XXX . 
D 3 EDO A 1 1602 2 EDO EDO . 
E 3 EDO A 1 1603 3 EDO EDO . 
F 2 W2H B 1 1601 2 W2H XXX . 
G 3 EDO B 1 1602 1 EDO EDO . 
H 4 HOH A 1 1701 40 HOH HOH . 
H 4 HOH A 2 1702 63 HOH HOH . 
H 4 HOH A 3 1703 19 HOH HOH . 
H 4 HOH A 4 1704 32 HOH HOH . 
H 4 HOH A 5 1705 76 HOH HOH . 
H 4 HOH A 6 1706 84 HOH HOH . 
H 4 HOH A 7 1707 79 HOH HOH . 
H 4 HOH A 8 1708 2 HOH HOH . 
H 4 HOH A 9 1709 6 HOH HOH . 
H 4 HOH A 10 1710 82 HOH HOH . 
H 4 HOH A 11 1711 87 HOH HOH . 
H 4 HOH A 12 1712 41 HOH HOH . 
H 4 HOH A 13 1713 9 HOH HOH . 
H 4 HOH A 14 1714 42 HOH HOH . 
H 4 HOH A 15 1715 16 HOH HOH . 
H 4 HOH A 16 1716 38 HOH HOH . 
H 4 HOH A 17 1717 53 HOH HOH . 
H 4 HOH A 18 1718 36 HOH HOH . 
H 4 HOH A 19 1719 75 HOH HOH . 
H 4 HOH A 20 1720 18 HOH HOH . 
H 4 HOH A 21 1721 83 HOH HOH . 
H 4 HOH A 22 1722 33 HOH HOH . 
H 4 HOH A 23 1723 81 HOH HOH . 
H 4 HOH A 24 1724 43 HOH HOH . 
H 4 HOH A 25 1725 39 HOH HOH . 
H 4 HOH A 26 1726 52 HOH HOH . 
H 4 HOH A 27 1727 86 HOH HOH . 
H 4 HOH A 28 1728 89 HOH HOH . 
H 4 HOH A 29 1729 101 HOH HOH . 
H 4 HOH A 30 1730 21 HOH HOH . 
H 4 HOH A 31 1731 37 HOH HOH . 
H 4 HOH A 32 1732 44 HOH HOH . 
H 4 HOH A 33 1733 85 HOH HOH . 
H 4 HOH A 34 1734 29 HOH HOH . 
H 4 HOH A 35 1735 51 HOH HOH . 
H 4 HOH A 36 1736 102 HOH HOH . 
H 4 HOH A 37 1737 35 HOH HOH . 
H 4 HOH A 38 1738 92 HOH HOH . 
H 4 HOH A 39 1739 30 HOH HOH . 
H 4 HOH A 40 1740 22 HOH HOH . 
H 4 HOH A 41 1741 56 HOH HOH . 
H 4 HOH A 42 1742 74 HOH HOH . 
H 4 HOH A 43 1743 45 HOH HOH . 
H 4 HOH A 44 1744 28 HOH HOH . 
H 4 HOH A 45 1745 49 HOH HOH . 
H 4 HOH A 46 1746 34 HOH HOH . 
H 4 HOH A 47 1747 47 HOH HOH . 
H 4 HOH A 48 1748 91 HOH HOH . 
H 4 HOH A 49 1749 77 HOH HOH . 
H 4 HOH A 50 1750 50 HOH HOH . 
H 4 HOH A 51 1751 10 HOH HOH . 
H 4 HOH A 52 1752 23 HOH HOH . 
H 4 HOH A 53 1753 80 HOH HOH . 
H 4 HOH A 54 1754 78 HOH HOH . 
H 4 HOH A 55 1755 88 HOH HOH . 
H 4 HOH A 56 1756 7 HOH HOH . 
H 4 HOH A 57 1757 46 HOH HOH . 
H 4 HOH A 58 1758 17 HOH HOH . 
I 4 HOH B 1 1701 70 HOH HOH . 
I 4 HOH B 2 1702 1 HOH HOH . 
I 4 HOH B 3 1703 57 HOH HOH . 
I 4 HOH B 4 1704 25 HOH HOH . 
I 4 HOH B 5 1705 31 HOH HOH . 
I 4 HOH B 6 1706 13 HOH HOH . 
I 4 HOH B 7 1707 59 HOH HOH . 
I 4 HOH B 8 1708 4 HOH HOH . 
I 4 HOH B 9 1709 60 HOH HOH . 
I 4 HOH B 10 1710 65 HOH HOH . 
I 4 HOH B 11 1711 3 HOH HOH . 
I 4 HOH B 12 1712 62 HOH HOH . 
I 4 HOH B 13 1713 54 HOH HOH . 
I 4 HOH B 14 1714 24 HOH HOH . 
I 4 HOH B 15 1715 100 HOH HOH . 
I 4 HOH B 16 1716 8 HOH HOH . 
I 4 HOH B 17 1717 58 HOH HOH . 
I 4 HOH B 18 1718 95 HOH HOH . 
I 4 HOH B 19 1719 96 HOH HOH . 
I 4 HOH B 20 1720 64 HOH HOH . 
I 4 HOH B 21 1721 26 HOH HOH . 
I 4 HOH B 22 1722 27 HOH HOH . 
I 4 HOH B 23 1723 12 HOH HOH . 
I 4 HOH B 24 1724 61 HOH HOH . 
I 4 HOH B 25 1725 72 HOH HOH . 
I 4 HOH B 26 1726 94 HOH HOH . 
I 4 HOH B 27 1727 99 HOH HOH . 
I 4 HOH B 28 1728 69 HOH HOH . 
I 4 HOH B 29 1729 90 HOH HOH . 
I 4 HOH B 30 1730 5 HOH HOH . 
I 4 HOH B 31 1731 71 HOH HOH . 
I 4 HOH B 32 1732 11 HOH HOH . 
I 4 HOH B 33 1733 55 HOH HOH . 
I 4 HOH B 34 1734 68 HOH HOH . 
I 4 HOH B 35 1735 97 HOH HOH . 
I 4 HOH B 36 1736 15 HOH HOH . 
I 4 HOH B 37 1737 98 HOH HOH . 
I 4 HOH B 38 1738 66 HOH HOH . 
I 4 HOH B 39 1739 14 HOH HOH . 
I 4 HOH B 40 1740 73 HOH HOH . 
I 4 HOH B 41 1741 48 HOH HOH . 
I 4 HOH B 42 1742 20 HOH HOH . 
I 4 HOH B 43 1743 93 HOH HOH . 
I 4 HOH B 44 1744 67 HOH HOH . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 C C1 EDO . . . G 3 8.888 -21.883 20.526 1 43.53 0 C1 EDO 1602 B 1 
HETATM 2 O O1 EDO . . . G 3 8.197 -20.845 21.201 1 44.54 0 O1 EDO 1602 B 1 
HETATM 3 C C2 EDO . . . G 3 9.487 -22.854 21.477 1 42.72 0 C2 EDO 1602 B 1 
HETATM 4 O O2 EDO . . . G 3 10.252 -22.23 22.488 1 42.59 0 O2 EDO 1602 B 1 
#
_model_server_stats.io_time_ms              30 
_model_server_stats.parse_time_ms           15 
_model_server_stats.create_model_time_ms    21 
_model_server_stats.query_time_ms           293 
_model_server_stats.encode_time_ms          4 
_model_server_stats.element_count           4 
#