data_8YTN # _model_server_result.job_id Bshw_diIYtOfjruVxdEqHg _model_server_result.datetime_utc '2024-10-10 08:25:14' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 8ytn # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"B","auth_seq_id":301}' # _entry.id 8YTN # _exptl.entry_id 8YTN _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 92.094 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description GLYCEROL _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 8YTN _cell.length_a 33.62 _cell.length_b 85.64 _cell.length_c 178.15 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? # _symmetry.entry_id 8YTN _symmetry.cell_setting ? _symmetry.Int_Tables_number 23 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'I 2 2 2' # _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 2 _struct_asym.id B _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order disulf ? disulf1 A SG CYS 25 A CYS 25 1_555 A SG CYS 93 A CYS 93 1_555 ? ? ? ? A ? ? ? ? ? ? ? 2.066 ? disulf ? disulf2 A SG CYS 25 A CYS 25 1_555 A SG CYS 93 A CYS 93 1_555 ? ? ? ? B ? ? ? ? ? ? ? 2.032 ? disulf ? disulf3 A SG CYS 151 A CYS 151 1_555 A SG CYS 225 A CYS 225 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.039 ? disulf ? disulf4 A SG CYS 229 A CYS 229 1_555 A SG CYS 232 A CYS 232 1_555 ? A ? ? A ? ? ? ? ? ? ? 2.029 ? disulf ? disulf5 A SG CYS 229 A CYS 229 1_555 A SG CYS 232 A CYS 232 1_555 ? B ? ? B ? ? ? ? ? ? ? 2.035 ? # _chem_comp.formula 'C3 H8 O3' _chem_comp.formula_weight 92.094 _chem_comp.id GOL _chem_comp.mon_nstd_flag . _chem_comp.name GLYCEROL _chem_comp.type non-polymer _chem_comp.pdbx_synonyms GLYCERIN;PROPANE-1,2,3-TRIOL # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C1 O1 GOL sing 129 n n C1 C2 GOL sing 130 n n C1 H11 GOL sing 131 n n C1 H12 GOL sing 132 n n O1 HO1 GOL sing 133 n n C2 O2 GOL sing 134 n n C2 C3 GOL sing 135 n n C2 H2 GOL sing 136 n n O2 HO2 GOL sing 137 n n C3 O3 GOL sing 138 n n C3 H31 GOL sing 139 n n C3 H32 GOL sing 140 n n O3 HO3 GOL sing 141 n n # _atom_sites.entry_id 8YTN _atom_sites.fract_transf_matrix[1][1] 0.029744 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.011677 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.005613 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 GOL A 1 301 1 GOL GOL . C 3 HOH A 1 401 104 HOH HOH . C 3 HOH A 2 402 129 HOH HOH . C 3 HOH A 3 403 144 HOH HOH . C 3 HOH A 4 404 65 HOH HOH . C 3 HOH A 5 405 173 HOH HOH . C 3 HOH A 6 406 95 HOH HOH . C 3 HOH A 7 407 117 HOH HOH . C 3 HOH A 8 408 54 HOH HOH . C 3 HOH A 9 409 125 HOH HOH . C 3 HOH A 10 410 124 HOH HOH . C 3 HOH A 11 411 38 HOH HOH . C 3 HOH A 12 412 27 HOH HOH . C 3 HOH A 13 413 67 HOH HOH . C 3 HOH A 14 414 132 HOH HOH . C 3 HOH A 15 415 51 HOH HOH . C 3 HOH A 16 416 25 HOH HOH . C 3 HOH A 17 417 77 HOH HOH . C 3 HOH A 18 418 28 HOH HOH . C 3 HOH A 19 419 35 HOH HOH . C 3 HOH A 20 420 32 HOH HOH . C 3 HOH A 21 421 39 HOH HOH . C 3 HOH A 22 422 113 HOH HOH . C 3 HOH A 23 423 4 HOH HOH . C 3 HOH A 24 424 166 HOH HOH . C 3 HOH A 25 425 92 HOH HOH . C 3 HOH A 26 426 137 HOH HOH . C 3 HOH A 27 427 114 HOH HOH . C 3 HOH A 28 428 10 HOH HOH . C 3 HOH A 29 429 69 HOH HOH . C 3 HOH A 30 430 23 HOH HOH . C 3 HOH A 31 431 31 HOH HOH . C 3 HOH A 32 432 119 HOH HOH . C 3 HOH A 33 433 107 HOH HOH . C 3 HOH A 34 434 24 HOH HOH . C 3 HOH A 35 435 15 HOH HOH . C 3 HOH A 36 436 49 HOH HOH . C 3 HOH A 37 437 42 HOH HOH . C 3 HOH A 38 438 8 HOH HOH . C 3 HOH A 39 439 2 HOH HOH . C 3 HOH A 40 440 183 HOH HOH . C 3 HOH A 41 441 26 HOH HOH . C 3 HOH A 42 442 93 HOH HOH . C 3 HOH A 43 443 135 HOH HOH . C 3 HOH A 44 444 103 HOH HOH . C 3 HOH A 45 445 3 HOH HOH . C 3 HOH A 46 446 21 HOH HOH . C 3 HOH A 47 447 43 HOH HOH . C 3 HOH A 48 448 83 HOH HOH . C 3 HOH A 49 449 46 HOH HOH . C 3 HOH A 50 450 11 HOH HOH . C 3 HOH A 51 451 66 HOH HOH . C 3 HOH A 52 452 72 HOH HOH . C 3 HOH A 53 453 63 HOH HOH . C 3 HOH A 54 454 37 HOH HOH . C 3 HOH A 55 455 102 HOH HOH . C 3 HOH A 56 456 75 HOH HOH . C 3 HOH A 57 457 34 HOH HOH . C 3 HOH A 58 458 13 HOH HOH . C 3 HOH A 59 459 100 HOH HOH . C 3 HOH A 60 460 7 HOH HOH . C 3 HOH A 61 461 90 HOH HOH . C 3 HOH A 62 462 9 HOH HOH . C 3 HOH A 63 463 62 HOH HOH . C 3 HOH A 64 464 17 HOH HOH . C 3 HOH A 65 465 73 HOH HOH . C 3 HOH A 66 466 142 HOH HOH . C 3 HOH A 67 467 16 HOH HOH . C 3 HOH A 68 468 147 HOH HOH . C 3 HOH A 69 469 68 HOH HOH . C 3 HOH A 70 470 6 HOH HOH . C 3 HOH A 71 471 36 HOH HOH . C 3 HOH A 72 472 41 HOH HOH . C 3 HOH A 73 473 85 HOH HOH . C 3 HOH A 74 474 143 HOH HOH . C 3 HOH A 75 475 158 HOH HOH . C 3 HOH A 76 476 108 HOH HOH . C 3 HOH A 77 477 14 HOH HOH . C 3 HOH A 78 478 151 HOH HOH . C 3 HOH A 79 479 78 HOH HOH . C 3 HOH A 80 480 74 HOH HOH . C 3 HOH A 81 481 5 HOH HOH . C 3 HOH A 82 482 98 HOH HOH . C 3 HOH A 83 483 55 HOH HOH . C 3 HOH A 84 484 94 HOH HOH . C 3 HOH A 85 485 52 HOH HOH . C 3 HOH A 86 486 148 HOH HOH . C 3 HOH A 87 487 169 HOH HOH . C 3 HOH A 88 488 58 HOH HOH . C 3 HOH A 89 489 47 HOH HOH . C 3 HOH A 90 490 50 HOH HOH . C 3 HOH A 91 491 181 HOH HOH . C 3 HOH A 92 492 105 HOH HOH . C 3 HOH A 93 493 33 HOH HOH . C 3 HOH A 94 494 79 HOH HOH . C 3 HOH A 95 495 134 HOH HOH . C 3 HOH A 96 496 29 HOH HOH . C 3 HOH A 97 497 12 HOH HOH . C 3 HOH A 98 498 1 HOH HOH . C 3 HOH A 99 499 60 HOH HOH . C 3 HOH A 100 500 53 HOH HOH . C 3 HOH A 101 501 139 HOH HOH . C 3 HOH A 102 502 30 HOH HOH . C 3 HOH A 103 503 149 HOH HOH . C 3 HOH A 104 504 161 HOH HOH . C 3 HOH A 105 505 118 HOH HOH . C 3 HOH A 106 506 44 HOH HOH . C 3 HOH A 107 507 22 HOH HOH . C 3 HOH A 108 508 131 HOH HOH . C 3 HOH A 109 509 110 HOH HOH . C 3 HOH A 110 510 20 HOH HOH . C 3 HOH A 111 511 19 HOH HOH . C 3 HOH A 112 512 180 HOH HOH . C 3 HOH A 113 513 138 HOH HOH . C 3 HOH A 114 514 141 HOH HOH . C 3 HOH A 115 515 163 HOH HOH . C 3 HOH A 116 516 59 HOH HOH . C 3 HOH A 117 517 128 HOH HOH . C 3 HOH A 118 518 18 HOH HOH . C 3 HOH A 119 519 155 HOH HOH . C 3 HOH A 120 520 168 HOH HOH . C 3 HOH A 121 521 121 HOH HOH . C 3 HOH A 122 522 40 HOH HOH . C 3 HOH A 123 523 96 HOH HOH . C 3 HOH A 124 524 89 HOH HOH . C 3 HOH A 125 525 81 HOH HOH . C 3 HOH A 126 526 57 HOH HOH . C 3 HOH A 127 527 70 HOH HOH . C 3 HOH A 128 528 159 HOH HOH . C 3 HOH A 129 529 71 HOH HOH . C 3 HOH A 130 530 112 HOH HOH . C 3 HOH A 131 531 120 HOH HOH . C 3 HOH A 132 532 82 HOH HOH . C 3 HOH A 133 533 127 HOH HOH . C 3 HOH A 134 534 162 HOH HOH . C 3 HOH A 135 535 172 HOH HOH . C 3 HOH A 136 536 115 HOH HOH . C 3 HOH A 137 537 140 HOH HOH . C 3 HOH A 138 538 164 HOH HOH . C 3 HOH A 139 539 160 HOH HOH . C 3 HOH A 140 540 61 HOH HOH . C 3 HOH A 141 541 178 HOH HOH . C 3 HOH A 142 542 111 HOH HOH . C 3 HOH A 143 543 130 HOH HOH . C 3 HOH A 144 544 48 HOH HOH . C 3 HOH A 145 545 122 HOH HOH . C 3 HOH A 146 546 136 HOH HOH . C 3 HOH A 147 547 87 HOH HOH . C 3 HOH A 148 548 182 HOH HOH . C 3 HOH A 149 549 106 HOH HOH . C 3 HOH A 150 550 175 HOH HOH . C 3 HOH A 151 551 99 HOH HOH . C 3 HOH A 152 552 86 HOH HOH . C 3 HOH A 153 553 174 HOH HOH . C 3 HOH A 154 554 56 HOH HOH . C 3 HOH A 155 555 184 HOH HOH . C 3 HOH A 156 556 145 HOH HOH . C 3 HOH A 157 557 101 HOH HOH . C 3 HOH A 158 558 91 HOH HOH . C 3 HOH A 159 559 97 HOH HOH . C 3 HOH A 160 560 156 HOH HOH . C 3 HOH A 161 561 146 HOH HOH . C 3 HOH A 162 562 123 HOH HOH . C 3 HOH A 163 563 84 HOH HOH . C 3 HOH A 164 564 64 HOH HOH . C 3 HOH A 165 565 116 HOH HOH . C 3 HOH A 166 566 45 HOH HOH . C 3 HOH A 167 567 176 HOH HOH . C 3 HOH A 168 568 165 HOH HOH . C 3 HOH A 169 569 170 HOH HOH . C 3 HOH A 170 570 154 HOH HOH . C 3 HOH A 171 571 177 HOH HOH . C 3 HOH A 172 572 179 HOH HOH . C 3 HOH A 173 573 80 HOH HOH . C 3 HOH A 174 574 152 HOH HOH . C 3 HOH A 175 575 76 HOH HOH . C 3 HOH A 176 576 109 HOH HOH . C 3 HOH A 177 577 150 HOH HOH . C 3 HOH A 178 578 88 HOH HOH . C 3 HOH A 179 579 167 HOH HOH . C 3 HOH A 180 580 171 HOH HOH . C 3 HOH A 181 581 126 HOH HOH . C 3 HOH A 182 582 157 HOH HOH . C 3 HOH A 183 583 153 HOH HOH . C 3 HOH A 184 584 133 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 GOL . . . B 2 1.641 13.773 36.903 0.77 48.32 ? C1 GOL 301 A 1 HETATM 2 O O1 GOL . . . B 2 2.192 12.574 36.425 0.77 34.9 ? O1 GOL 301 A 1 HETATM 3 C C2 GOL . . . B 2 0.094 13.624 36.951 0.77 43.1 ? C2 GOL 301 A 1 HETATM 4 O O2 GOL . . . B 2 -0.317 12.636 37.838 0.77 40.01 ? O2 GOL 301 A 1 HETATM 5 C C3 GOL . . . B 2 -0.428 15.038 37.343 0.77 39.17 ? C3 GOL 301 A 1 HETATM 6 O O3 GOL . . . B 2 -1.337 14.897 38.412 0.77 29.22 ? O3 GOL 301 A 1 # _model_server_stats.io_time_ms 0 _model_server_stats.parse_time_ms 10 _model_server_stats.create_model_time_ms 3 _model_server_stats.query_time_ms 253 _model_server_stats.encode_time_ms 5 _model_server_stats.element_count 6 #