data_8YU9 # _model_server_result.job_id 6bra7E2bNPvXMu1RitpvhQ _model_server_result.datetime_utc '2024-10-18 06:24:48' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 8yu9 # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"R","auth_seq_id":501}' # _entry.id 8YU9 # _exptl.entry_id 8YU9 _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 346.791 _entity.id 8 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 4-(2-chloranylthieno[3,2-d]pyrimidin-4-yl)-7-methoxy-1,3-dihydroquinoxalin-2-one _entity.pdbx_number_of_molecules 2 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 8YU9 _cell.length_a 104.974 _cell.length_b 157.379 _cell.length_c 182.635 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? # _symmetry.entry_id 8YU9 _symmetry.cell_setting ? _symmetry.Int_Tables_number 19 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 21 21 21' # _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details hexameric _pdbx_struct_assembly.oligomeric_count 6 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J,K,L,M,N,O,P,Q,R,S,T _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 8 J N N ? 8 R N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order covale ? covale1 B NH2 ARG 251 B ARG 251 1_555 L O3S MES . B MES 503 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.298 ? metalc ? metalc1 A OD2 ASP 39 A ASP 39 1_555 H CA CA . A CA 502 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.992 ? metalc ? metalc2 A OG1 THR 41 A THR 41 1_555 H CA CA . A CA 502 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.212 ? metalc ? metalc3 A O GLY 44 A GLY 44 1_555 H CA CA . A CA 502 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.45 ? metalc ? metalc4 A OD2 ASP 47 A ASP 47 1_555 H CA CA . A CA 502 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.315 ? metalc ? metalc5 A OD1 ASN 50 A ASN 50 1_555 H CA CA . A CA 502 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.725 ? metalc ? metalc6 A OE2 GLU 55 A GLU 55 1_555 H CA CA . A CA 502 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.29 ? metalc ? metalc7 A OE2 GLU 71 A GLU 71 1_555 I MG MG . A MG 503 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.916 ? metalc ? metalc8 G O2G GTP . A GTP 501 1_555 I MG MG . A MG 503 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.778 ? metalc ? metalc9 G O2B GTP . A GTP 501 1_555 I MG MG . A MG 503 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.201 ? metalc ? metalc10 B OE1 GLN 11 B GLN 11 1_555 N MG MG . B MG 505 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.658 ? metalc ? metalc11 B OD2 ASP 177 B ASP 177 1_555 N MG MG . B MG 505 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.514 ? metalc ? metalc12 K O2A GDP . B GDP 502 1_555 N MG MG . B MG 505 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.559 ? metalc ? metalc13 C OD1 ASP 39 C ASP 39 1_555 P CA CA . C CA 502 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.301 ? metalc ? metalc14 C OD2 ASP 39 C ASP 39 1_555 P CA CA . C CA 502 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.451 ? metalc ? metalc15 C OG1 THR 41 C THR 41 1_555 P CA CA . C CA 502 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.246 ? metalc ? metalc16 C OD2 ASP 47 C ASP 47 1_555 P CA CA . C CA 502 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.482 ? metalc ? metalc17 C OE2 GLU 55 C GLU 55 1_555 P CA CA . C CA 502 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.225 ? metalc ? metalc18 O O3G GTP . C GTP 501 1_555 Q MG MG . C MG 503 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.97 ? metalc ? metalc19 O O2B GTP . C GTP 501 1_555 Q MG MG . C MG 503 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.455 ? # _chem_comp.formula 'C15 H11 Cl N4 O2 S' _chem_comp.formula_weight 346.791 _chem_comp.id A1D7A _chem_comp.mon_nstd_flag . _chem_comp.name 4-(2-chloranylthieno[3,2-d]pyrimidin-4-yl)-7-methoxy-1,3-dihydroquinoxalin-2-one _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag O18 C19 A1D7A sing 1 n n O18 C16 A1D7A sing 2 n n C17 C16 A1D7A doub 3 n y C17 C12 A1D7A sing 4 n y C16 C15 A1D7A sing 5 n y C12 N11 A1D7A sing 6 n n C12 C13 A1D7A doub 7 n y N11 C09 A1D7A sing 8 n n C15 C14 A1D7A doub 9 n y O10 C09 A1D7A doub 10 n n C09 C08 A1D7A sing 11 n n C13 C14 A1D7A sing 12 n y C13 N07 A1D7A sing 13 n n S23 C22 A1D7A sing 14 n y S23 C01 A1D7A sing 15 n y C22 C21 A1D7A doub 16 n y N07 C08 A1D7A sing 17 n n N07 C06 A1D7A sing 18 n n C01 C06 A1D7A doub 19 n y C01 C02 A1D7A sing 20 n y C06 N05 A1D7A sing 21 n y C21 C02 A1D7A sing 22 n y C02 N03 A1D7A doub 23 n y N05 C04 A1D7A doub 24 n y N03 C04 A1D7A sing 25 n y C04 CL20 A1D7A sing 26 n n C15 H151 A1D7A sing 27 n n C17 H171 A1D7A sing 28 n n C21 H211 A1D7A sing 29 n n C22 H221 A1D7A sing 30 n n C08 H081 A1D7A sing 31 n n C08 H082 A1D7A sing 32 n n C14 H141 A1D7A sing 33 n n C19 H193 A1D7A sing 34 n n C19 H191 A1D7A sing 35 n n C19 H192 A1D7A sing 36 n n N11 H111 A1D7A sing 37 n n # _atom_sites.entry_id 8YU9 _atom_sites.fract_transf_matrix[1][1] 0.009526 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.006354 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.005475 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code G 5 GTP A 1 501 501 GTP GTP . H 6 CA A 1 502 502 CA CA . I 7 MG A 1 503 503 MG MG . J 8 A1D7A B 1 501 505 A1D7A LIG . K 9 GDP B 1 502 501 GDP GDP . L 10 MES B 1 503 502 MES MES . M 10 MES B 1 504 503 MES MES . N 7 MG B 1 505 504 MG MG . O 5 GTP C 1 501 501 GTP GTP . P 6 CA C 1 502 502 CA CA . Q 7 MG C 1 503 503 MG MG . R 8 A1D7A D 1 501 502 A1D7A LIG . S 9 GDP D 1 502 501 GDP GDP . T 11 ACP F 1 401 401 ACP ACP . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C13 A1D7A . . . R 8 14.638 -7.596 19.239 1 58.7 ? C13 A1D7A 501 D 1 HETATM 2 C C15 A1D7A . . . R 8 13.881 -5.708 17.715 1 60.62 ? C15 A1D7A 501 D 1 HETATM 3 C C17 A1D7A . . . R 8 14.147 -7.862 16.82 1 59.54 ? C17 A1D7A 501 D 1 HETATM 4 C C21 A1D7A . . . R 8 10.692 -6.815 22.624 1 67.84 ? C21 A1D7A 501 D 1 HETATM 5 C C22 A1D7A . . . R 8 10.238 -6.794 21.309 1 67.68 ? C22 A1D7A 501 D 1 HETATM 6 C C01 A1D7A . . . R 8 12.803 -7.456 21.547 1 63.45 ? C01 A1D7A 501 D 1 HETATM 7 C C02 A1D7A . . . R 8 12.065 -7.177 22.77 1 65.86 ? C02 A1D7A 501 D 1 HETATM 8 C C04 A1D7A . . . R 8 13.973 -7.597 23.961 1 67.56 ? C04 A1D7A 501 D 1 HETATM 9 C C06 A1D7A . . . R 8 14.119 -7.838 21.653 1 67.52 ? C06 A1D7A 501 D 1 HETATM 10 C C08 A1D7A . . . R 8 15.538 -9.47 20.828 1 60.15 ? C08 A1D7A 501 D 1 HETATM 11 C C09 A1D7A . . . R 8 15.367 -10.36 19.566 1 59.94 ? C09 A1D7A 501 D 1 HETATM 12 C C12 A1D7A . . . R 8 14.568 -8.369 18.118 1 60.68 ? C12 A1D7A 501 D 1 HETATM 13 C C14 A1D7A . . . R 8 14.291 -6.226 18.979 1 61.25 ? C14 A1D7A 501 D 1 HETATM 14 C C16 A1D7A . . . R 8 13.836 -6.514 16.58 1 57.55 ? C16 A1D7A 501 D 1 HETATM 15 C C19 A1D7A . . . R 8 13.779 -5.216 14.254 1 67.92 ? C19 A1D7A 501 D 1 HETATM 16 N N03 A1D7A . . . R 8 12.674 -7.25 23.933 1 66.64 ? N03 A1D7A 501 D 1 HETATM 17 N N05 A1D7A . . . R 8 14.688 -7.867 22.871 1 70.51 ? N05 A1D7A 501 D 1 HETATM 18 N N07 A1D7A . . . R 8 15.027 -8.15 20.553 1 60.88 ? N07 A1D7A 501 D 1 HETATM 19 N N11 A1D7A . . . R 8 14.904 -9.768 18.338 1 61.24 ? N11 A1D7A 501 D 1 HETATM 20 O O10 A1D7A . . . R 8 15.664 -11.497 19.445 1 61.6 ? O10 A1D7A 501 D 1 HETATM 21 O O18 A1D7A . . . R 8 13.351 -6.094 15.257 1 64.71 ? O18 A1D7A 501 D 1 HETATM 22 S S23 A1D7A . . . R 8 11.663 -7.287 20.289 1 62.33 ? S23 A1D7A 501 D 1 HETATM 23 CL CL20 A1D7A . . . R 8 14.799 -7.708 25.568 1 82.06 ? CL20 A1D7A 501 D 1 HETATM 24 H H151 A1D7A . . . R 8 13.577 -4.583 17.626 1 72.74 ? H151 A1D7A 501 D 1 HETATM 25 H H171 A1D7A . . . R 8 14.069 -8.569 15.984 1 71.44 ? H171 A1D7A 501 D 1 HETATM 26 H H211 A1D7A . . . R 8 10.023 -6.564 23.507 1 81.4 ? H211 A1D7A 501 D 1 HETATM 27 H H221 A1D7A . . . R 8 9.21 -6.529 20.953 1 81.22 ? H221 A1D7A 501 D 1 HETATM 28 H H081 A1D7A . . . R 8 16.612 -9.404 21.093 1 72.19 ? H081 A1D7A 501 D 1 HETATM 29 H H082 A1D7A . . . R 8 14.979 -9.915 21.675 1 72.19 ? H082 A1D7A 501 D 1 HETATM 30 H H141 A1D7A . . . R 8 14.347 -5.477 19.866 1 73.5 ? H141 A1D7A 501 D 1 HETATM 31 H H193 A1D7A . . . R 8 14.891 -5.355 14.079 1 81.51 ? H193 A1D7A 501 D 1 HETATM 32 H H191 A1D7A . . . R 8 13.579 -4.147 14.575 1 81.51 ? H191 A1D7A 501 D 1 HETATM 33 H H192 A1D7A . . . R 8 13.216 -5.434 13.294 1 81.51 ? H192 A1D7A 501 D 1 HETATM 34 H H111 A1D7A . . . R 8 14.807 -10.352 17.593 1 73.48 ? H111 A1D7A 501 D 1 # _model_server_stats.io_time_ms 0 _model_server_stats.parse_time_ms 15 _model_server_stats.create_model_time_ms 40 _model_server_stats.query_time_ms 306 _model_server_stats.encode_time_ms 4 _model_server_stats.element_count 34 #