data_8YUV
#
_model_server_result.job_id            Kd2tPf4b2CzZC3gpT_5wrQ 
_model_server_result.datetime_utc      '2024-12-23 02:31:44' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          8yuv 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"F","auth_seq_id":501}' 
#
_entry.id    8YUV 
#
_exptl.entry_id    8YUV 
_exptl.method      'ELECTRON MICROSCOPY' 
#
_entity.details                     ? 
_entity.formula_weight              165.235 
_entity.id                          6 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            4-(1H-imidazol-5-ylmethyl)piperidine 
_entity.pdbx_number_of_molecules    1 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          90 
_cell.angle_gamma         90 
_cell.entry_id            8YUV 
_cell.length_a            1 
_cell.length_b            1 
_cell.length_c            1 
_cell.Z_PDB               ? 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 8YUV 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        1 
_symmetry.space_group_name_Hall    ? 
_symmetry.space_group_name_H-M     'P 1' 
#
_pdbx_struct_assembly.method_details        ? 
_pdbx_struct_assembly.oligomeric_details    pentameric 
_pdbx_struct_assembly.oligomeric_count      5 
_pdbx_struct_assembly.details               author_defined_assembly 
_pdbx_struct_assembly.id                    1 
#
_pdbx_struct_assembly_gen.asym_id_list       A,B,C,D,E,F,G 
_pdbx_struct_assembly_gen.assembly_id        1 
_pdbx_struct_assembly_gen.oper_expression    1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    ? 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
_struct_asym.details                        ? 
_struct_asym.entity_id                      6 
_struct_asym.id                             F 
_struct_asym.pdbx_modified                  N 
_struct_asym.pdbx_blank_PDB_chainid_flag    N 
#
loop_
_struct_conn.conn_type_id
_struct_conn.details
_struct_conn.id
_struct_conn.ptnr1_label_asym_id
_struct_conn.ptnr1_label_atom_id
_struct_conn.ptnr1_label_comp_id
_struct_conn.ptnr1_label_seq_id
_struct_conn.ptnr1_auth_asym_id
_struct_conn.ptnr1_auth_comp_id
_struct_conn.ptnr1_auth_seq_id
_struct_conn.ptnr1_symmetry
_struct_conn.ptnr2_label_asym_id
_struct_conn.ptnr2_label_atom_id
_struct_conn.ptnr2_label_comp_id
_struct_conn.ptnr2_label_seq_id
_struct_conn.ptnr2_auth_asym_id
_struct_conn.ptnr2_auth_comp_id
_struct_conn.ptnr2_auth_seq_id
_struct_conn.ptnr2_symmetry
_struct_conn.pdbx_ptnr1_PDB_ins_code
_struct_conn.pdbx_ptnr1_label_alt_id
_struct_conn.pdbx_ptnr1_standard_comp_id
_struct_conn.pdbx_ptnr2_PDB_ins_code
_struct_conn.pdbx_ptnr2_label_alt_id
_struct_conn.pdbx_ptnr3_PDB_ins_code
_struct_conn.pdbx_ptnr3_label_alt_id
_struct_conn.pdbx_ptnr3_label_asym_id
_struct_conn.pdbx_ptnr3_label_atom_id
_struct_conn.pdbx_ptnr3_label_comp_id
_struct_conn.pdbx_ptnr3_label_seq_id
_struct_conn.pdbx_PDB_id
_struct_conn.pdbx_dist_value
_struct_conn.pdbx_value_order
disulf ? disulf1 D SG CYS 22 S CYS 22 1_555 D SG CYS 96 S CYS 96 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.04 ? 
disulf ? disulf2 D SG CYS 159 S CYS 159 1_555 D SG CYS 229 S CYS 229 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.047 ? 
disulf ? disulf3 E SG CYS 123 R CYS 107 1_555 E SG CYS 204 R CYS 188 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.046 ? 
disulf ? disulf4 E SG CYS 400 R CYS 384 1_555 E SG CYS 404 R CYS 388 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.104 ? 
#
_chem_comp.formula           'C9 H15 N3' 
_chem_comp.formula_weight    165.235 
_chem_comp.id                A1LY4 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              4-(1H-imidazol-5-ylmethyl)piperidine 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     ? 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
N03 C04 A1LY4 sing 1 n n 
N03 C02 A1LY4 sing 2 n n 
C04 C05 A1LY4 sing 3 n n 
C02 C01 A1LY4 sing 4 n n 
C05 C06 A1LY4 sing 5 n n 
C06 C01 A1LY4 sing 6 n n 
C06 C07 A1LY4 sing 7 n n 
N10 C09 A1LY4 sing 8 n y 
N10 C11 A1LY4 doub 9 n y 
C09 C08 A1LY4 doub 10 n y 
C11 N12 A1LY4 sing 11 n y 
C08 C07 A1LY4 sing 12 n n 
C08 N12 A1LY4 sing 13 n y 
N12 H1 A1LY4 sing 14 n n 
C01 H2 A1LY4 sing 15 n n 
C01 H3 A1LY4 sing 16 n n 
C02 H4 A1LY4 sing 17 n n 
C02 H5 A1LY4 sing 18 n n 
C04 H6 A1LY4 sing 19 n n 
C04 H7 A1LY4 sing 20 n n 
C05 H8 A1LY4 sing 21 n n 
C05 H9 A1LY4 sing 22 n n 
C06 H10 A1LY4 sing 23 n n 
C07 H11 A1LY4 sing 24 n n 
C07 H12 A1LY4 sing 25 n n 
C09 H13 A1LY4 sing 26 n n 
C11 H14 A1LY4 sing 27 n n 
N03 H15 A1LY4 sing 28 n n 
#
_atom_sites.entry_id                     8YUV 
_atom_sites.fract_transf_matrix[1][1]    1 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    1 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    1 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
F 6 A1LY4 R 1 501 501 A1LY4 IME . 
G 7 CLR R 1 502 504 CLR CLR . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 N N12 A1LY4 . . . F 6 88.774 119.668 110.663 1 61.6 ? N12 A1LY4 501 R 1 
HETATM 2 C C01 A1LY4 . . . F 6 91.816 121.422 109.483 1 61.6 ? C01 A1LY4 501 R 1 
HETATM 3 C C02 A1LY4 . . . F 6 93.237 121.453 108.945 1 61.6 ? C02 A1LY4 501 R 1 
HETATM 4 C C04 A1LY4 . . . F 6 93.423 119.084 109.659 1 61.6 ? C04 A1LY4 501 R 1 
HETATM 5 C C05 A1LY4 . . . F 6 92.15 119.221 110.478 1 61.6 ? C05 A1LY4 501 R 1 
HETATM 6 C C06 A1LY4 . . . F 6 91.869 120.688 110.82 1 61.6 ? C06 A1LY4 501 R 1 
HETATM 7 C C07 A1LY4 . . . F 6 90.711 120.782 111.786 1 61.6 ? C07 A1LY4 501 R 1 
HETATM 8 C C08 A1LY4 . . . F 6 89.444 120.762 111.042 1 61.6 ? C08 A1LY4 501 R 1 
HETATM 9 C C09 A1LY4 . . . F 6 88.794 121.817 110.605 1 61.6 ? C09 A1LY4 501 R 1 
HETATM 10 C C11 A1LY4 . . . F 6 87.684 120.138 110.009 1 61.6 ? C11 A1LY4 501 R 1 
HETATM 11 N N03 A1LY4 . . . F 6 94.084 120.37 109.462 1 61.6 ? N03 A1LY4 501 R 1 
HETATM 12 N N10 A1LY4 . . . F 6 87.645 121.424 109.973 1 61.6 ? N10 A1LY4 501 R 1 
HETATM 13 H H1 A1LY4 . . . F 6 88.982 118.848 110.808 1 61.6 ? H1 A1LY4 501 R 1 
HETATM 14 H H2 A1LY4 . . . F 6 91.511 122.328 109.612 1 61.6 ? H2 A1LY4 501 R 1 
HETATM 15 H H3 A1LY4 . . . F 6 91.259 120.959 108.842 1 61.6 ? H3 A1LY4 501 R 1 
HETATM 16 H H4 A1LY4 . . . F 6 93.196 121.375 107.979 1 61.6 ? H4 A1LY4 501 R 1 
HETATM 17 H H5 A1LY4 . . . F 6 93.639 122.302 109.181 1 61.6 ? H5 A1LY4 501 R 1 
HETATM 18 H H6 A1LY4 . . . F 6 93.203 118.719 108.79 1 61.6 ? H6 A1LY4 501 R 1 
HETATM 19 H H7 A1LY4 . . . F 6 94.032 118.481 110.109 1 61.6 ? H7 A1LY4 501 R 1 
HETATM 20 H H8 A1LY4 . . . F 6 92.204 118.668 111.266 1 61.6 ? H8 A1LY4 501 R 1 
HETATM 21 H H9 A1LY4 . . . F 6 91.414 118.908 109.959 1 61.6 ? H9 A1LY4 501 R 1 
HETATM 22 H H10 A1LY4 . . . F 6 92.575 121.124 111.281 1 61.6 ? H10 A1LY4 501 R 1 
HETATM 23 H H11 A1LY4 . . . F 6 90.733 120.057 112.425 1 61.6 ? H11 A1LY4 501 R 1 
HETATM 24 H H12 A1LY4 . . . F 6 90.781 121.621 112.265 1 61.6 ? H12 A1LY4 501 R 1 
HETATM 25 H H13 A1LY4 . . . F 6 89.054 122.697 110.747 1 61.6 ? H13 A1LY4 501 R 1 
HETATM 26 H H14 A1LY4 . . . F 6 87.036 119.633 109.629 1 61.6 ? H14 A1LY4 501 R 1 
HETATM 27 H H15 A1LY4 . . . F 6 94.615 120.612 110.137 1 61.6 ? H15 A1LY4 501 R 1 
#
_model_server_stats.io_time_ms              78 
_model_server_stats.parse_time_ms           14 
_model_server_stats.create_model_time_ms    11 
_model_server_stats.query_time_ms           208 
_model_server_stats.encode_time_ms          2 
_model_server_stats.element_count           27 
#