data_8YUV # _model_server_result.job_id ZznHWVnPfpdvxcqXjgSWWw _model_server_result.datetime_utc '2024-12-23 03:02:39' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 8yuv # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"G","auth_seq_id":502}' # _entry.id 8YUV # _exptl.entry_id 8YUV _exptl.method 'ELECTRON MICROSCOPY' # _entity.details ? _entity.formula_weight 386.654 _entity.id 7 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description CHOLESTEROL _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 8YUV _cell.length_a 1 _cell.length_b 1 _cell.length_c 1 _cell.Z_PDB ? _cell.pdbx_unique_axis ? # _symmetry.entry_id 8YUV _symmetry.cell_setting ? _symmetry.Int_Tables_number 1 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 1' # _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details pentameric _pdbx_struct_assembly.oligomeric_count 5 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation ? _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 7 _struct_asym.id G _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order disulf ? disulf1 D SG CYS 22 S CYS 22 1_555 D SG CYS 96 S CYS 96 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.04 ? disulf ? disulf2 D SG CYS 159 S CYS 159 1_555 D SG CYS 229 S CYS 229 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.047 ? disulf ? disulf3 E SG CYS 123 R CYS 107 1_555 E SG CYS 204 R CYS 188 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.046 ? disulf ? disulf4 E SG CYS 400 R CYS 384 1_555 E SG CYS 404 R CYS 388 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.104 ? # _chem_comp.formula 'C27 H46 O' _chem_comp.formula_weight 386.654 _chem_comp.id CLR _chem_comp.mon_nstd_flag . _chem_comp.name CHOLESTEROL _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C1 C2 CLR sing 98 n n C1 C10 CLR sing 99 n n C1 H11 CLR sing 100 n n C1 H12 CLR sing 101 n n C2 C3 CLR sing 102 n n C2 H21 CLR sing 103 n n C2 H22 CLR sing 104 n n C3 C4 CLR sing 105 n n C3 O1 CLR sing 106 n n C3 H3 CLR sing 107 n n C4 C5 CLR sing 108 n n C4 H41 CLR sing 109 n n C4 H42 CLR sing 110 n n C5 C6 CLR doub 111 n n C5 C10 CLR sing 112 n n C6 C7 CLR sing 113 n n C6 H6 CLR sing 114 n n C7 C8 CLR sing 115 n n C7 H71 CLR sing 116 n n C7 H72 CLR sing 117 n n C8 C9 CLR sing 118 n n C8 C14 CLR sing 119 n n C8 H8 CLR sing 120 n n C9 C10 CLR sing 121 n n C9 C11 CLR sing 122 n n C9 H9 CLR sing 123 n n C10 C19 CLR sing 124 n n C11 C12 CLR sing 125 n n C11 H111 CLR sing 126 n n C11 H112 CLR sing 127 n n C12 C13 CLR sing 128 n n C12 H121 CLR sing 129 n n C12 H122 CLR sing 130 n n C13 C14 CLR sing 131 n n C13 C17 CLR sing 132 n n C13 C18 CLR sing 133 n n C14 C15 CLR sing 134 n n C14 H14 CLR sing 135 n n C15 C16 CLR sing 136 n n C15 H151 CLR sing 137 n n C15 H152 CLR sing 138 n n C16 C17 CLR sing 139 n n C16 H161 CLR sing 140 n n C16 H162 CLR sing 141 n n C17 C20 CLR sing 142 n n C17 H17 CLR sing 143 n n C18 H181 CLR sing 144 n n C18 H182 CLR sing 145 n n C18 H183 CLR sing 146 n n C19 H191 CLR sing 147 n n C19 H192 CLR sing 148 n n C19 H193 CLR sing 149 n n C20 C21 CLR sing 150 n n C20 C22 CLR sing 151 n n C20 H20 CLR sing 152 n n C21 H211 CLR sing 153 n n C21 H212 CLR sing 154 n n C21 H213 CLR sing 155 n n C22 C23 CLR sing 156 n n C22 H221 CLR sing 157 n n C22 H222 CLR sing 158 n n C23 C24 CLR sing 159 n n C23 H231 CLR sing 160 n n C23 H232 CLR sing 161 n n C24 C25 CLR sing 162 n n C24 H241 CLR sing 163 n n C24 H242 CLR sing 164 n n C25 C26 CLR sing 165 n n C25 C27 CLR sing 166 n n C25 H25 CLR sing 167 n n C26 H261 CLR sing 168 n n C26 H262 CLR sing 169 n n C26 H263 CLR sing 170 n n C27 H271 CLR sing 171 n n C27 H272 CLR sing 172 n n C27 H273 CLR sing 173 n n O1 H1 CLR sing 174 n n # _atom_sites.entry_id 8YUV _atom_sites.fract_transf_matrix[1][1] 1 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 1 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 1 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code F 6 A1LY4 R 1 501 501 A1LY4 IME . G 7 CLR R 1 502 504 CLR CLR . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 CLR . . . G 7 77.386 126.775 115.132 1 86.71 ? C1 CLR 502 R 1 HETATM 2 C C2 CLR . . . G 7 77.412 127.968 116.096 1 86.71 ? C2 CLR 502 R 1 HETATM 3 C C3 CLR . . . G 7 78.297 129.143 115.632 1 86.71 ? C3 CLR 502 R 1 HETATM 4 C C4 CLR . . . G 7 77.898 129.511 114.192 1 86.71 ? C4 CLR 502 R 1 HETATM 5 C C5 CLR . . . G 7 77.899 128.343 113.216 1 86.71 ? C5 CLR 502 R 1 HETATM 6 C C6 CLR . . . G 7 78.62 128.446 112.084 1 86.71 ? C6 CLR 502 R 1 HETATM 7 C C7 CLR . . . G 7 78.592 127.363 111.004 1 86.71 ? C7 CLR 502 R 1 HETATM 8 C C8 CLR . . . G 7 77.423 126.373 111.244 1 86.71 ? C8 CLR 502 R 1 HETATM 9 C C9 CLR . . . G 7 77.476 125.92 112.735 1 86.71 ? C9 CLR 502 R 1 HETATM 10 C C10 CLR . . . G 7 77.062 127.117 113.651 1 86.71 ? C10 CLR 502 R 1 HETATM 11 C C11 CLR . . . G 7 76.822 124.547 113.035 1 86.71 ? C11 CLR 502 R 1 HETATM 12 C C12 CLR . . . G 7 76.714 123.502 111.9 1 86.71 ? C12 CLR 502 R 1 HETATM 13 C C13 CLR . . . G 7 76.469 124.1 110.48 1 86.71 ? C13 CLR 502 R 1 HETATM 14 C C14 CLR . . . G 7 77.586 125.185 110.328 1 86.71 ? C14 CLR 502 R 1 HETATM 15 C C15 CLR . . . G 7 77.728 125.514 108.808 1 86.71 ? C15 CLR 502 R 1 HETATM 16 C C16 CLR . . . G 7 77.253 124.18 108.107 1 86.71 ? C16 CLR 502 R 1 HETATM 17 C C17 CLR . . . G 7 76.875 123.154 109.283 1 86.71 ? C17 CLR 502 R 1 HETATM 18 C C18 CLR . . . G 7 75.04 124.66 110.303 1 86.71 ? C18 CLR 502 R 1 HETATM 19 C C19 CLR . . . G 7 75.54 127.471 113.49 1 86.71 ? C19 CLR 502 R 1 HETATM 20 C C20 CLR . . . G 7 75.829 122.132 108.797 1 86.71 ? C20 CLR 502 R 1 HETATM 21 C C21 CLR . . . G 7 75.423 121.071 109.846 1 86.71 ? C21 CLR 502 R 1 HETATM 22 C C22 CLR . . . G 7 76.408 121.353 107.554 1 86.71 ? C22 CLR 502 R 1 HETATM 23 C C23 CLR . . . G 7 75.614 121.711 106.287 1 86.71 ? C23 CLR 502 R 1 HETATM 24 C C24 CLR . . . G 7 76.273 120.964 105.062 1 86.71 ? C24 CLR 502 R 1 HETATM 25 C C25 CLR . . . G 7 76.071 119.426 105.084 1 86.71 ? C25 CLR 502 R 1 HETATM 26 C C26 CLR . . . G 7 76.589 118.878 103.724 1 86.71 ? C26 CLR 502 R 1 HETATM 27 C C27 CLR . . . G 7 74.672 118.896 105.497 1 86.71 ? C27 CLR 502 R 1 HETATM 28 O O1 CLR . . . G 7 78.267 130.271 116.495 1 86.71 ? O1 CLR 502 R 1 HETATM 29 H H11 CLR . . . G 7 78.254 126.348 115.171 1 86.71 ? H11 CLR 502 R 1 HETATM 30 H H12 CLR . . . G 7 76.723 126.146 115.455 1 86.71 ? H12 CLR 502 R 1 HETATM 31 H H21 CLR . . . G 7 77.75 127.656 116.949 1 86.71 ? H21 CLR 502 R 1 HETATM 32 H H22 CLR . . . G 7 76.508 128.293 116.221 1 86.71 ? H22 CLR 502 R 1 HETATM 33 H H3 CLR . . . G 7 79.211 128.822 115.604 1 86.71 ? H3 CLR 502 R 1 HETATM 34 H H41 CLR . . . G 7 77.01 129.897 114.212 1 86.71 ? H41 CLR 502 R 1 HETATM 35 H H42 CLR . . . G 7 78.516 130.189 113.877 1 86.71 ? H42 CLR 502 R 1 HETATM 36 H H6 CLR . . . G 7 79.324 129.051 112.059 1 86.71 ? H6 CLR 502 R 1 HETATM 37 H H71 CLR . . . G 7 78.473 127.796 110.147 1 86.71 ? H71 CLR 502 R 1 HETATM 38 H H72 CLR . . . G 7 79.433 126.881 111.013 1 86.71 ? H72 CLR 502 R 1 HETATM 39 H H8 CLR . . . G 7 76.598 126.835 111.044 1 86.71 ? H8 CLR 502 R 1 HETATM 40 H H9 CLR . . . G 7 78.417 125.766 112.913 1 86.71 ? H9 CLR 502 R 1 HETATM 41 H H111 CLR . . . G 7 75.937 124.685 113.392 1 86.71 ? H111 CLR 502 R 1 HETATM 42 H H112 CLR . . . G 7 77.355 124.134 113.732 1 86.71 ? H112 CLR 502 R 1 HETATM 43 H H121 CLR . . . G 7 75.973 122.917 112.115 1 86.71 ? H121 CLR 502 R 1 HETATM 44 H H122 CLR . . . G 7 77.524 122.975 111.889 1 86.71 ? H122 CLR 502 R 1 HETATM 45 H H14 CLR . . . G 7 78.418 124.764 110.581 1 86.71 ? H14 CLR 502 R 1 HETATM 46 H H151 CLR . . . G 7 78.654 125.698 108.586 1 86.71 ? H151 CLR 502 R 1 HETATM 47 H H152 CLR . . . G 7 77.152 126.253 108.56 1 86.71 ? H152 CLR 502 R 1 HETATM 48 H H161 CLR . . . G 7 77.979 123.827 107.571 1 86.71 ? H161 CLR 502 R 1 HETATM 49 H H162 CLR . . . G 7 76.481 124.368 107.554 1 86.71 ? H162 CLR 502 R 1 HETATM 50 H H17 CLR . . . G 7 77.678 122.673 109.533 1 86.71 ? H17 CLR 502 R 1 HETATM 51 H H181 CLR . . . G 7 74.394 123.948 110.421 1 86.71 ? H181 CLR 502 R 1 HETATM 52 H H182 CLR . . . G 7 74.86 125.341 110.963 1 86.71 ? H182 CLR 502 R 1 HETATM 53 H H183 CLR . . . G 7 74.93 125.043 109.421 1 86.71 ? H183 CLR 502 R 1 HETATM 54 H H191 CLR . . . G 7 75.119 127.554 114.358 1 86.71 ? H191 CLR 502 R 1 HETATM 55 H H192 CLR . . . G 7 75.458 128.311 113.016 1 86.71 ? H192 CLR 502 R 1 HETATM 56 H H193 CLR . . . G 7 75.078 126.788 112.985 1 86.71 ? H193 CLR 502 R 1 HETATM 57 H H20 CLR . . . G 7 75.029 122.595 108.511 1 86.71 ? H20 CLR 502 R 1 HETATM 58 H H211 CLR . . . G 7 74.906 120.369 109.427 1 86.71 ? H211 CLR 502 R 1 HETATM 59 H H212 CLR . . . G 7 74.874 121.487 110.526 1 86.71 ? H212 CLR 502 R 1 HETATM 60 H H213 CLR . . . G 7 76.219 120.695 110.254 1 86.71 ? H213 CLR 502 R 1 HETATM 61 H H221 CLR . . . G 7 76.335 120.401 107.714 1 86.71 ? H221 CLR 502 R 1 HETATM 62 H H222 CLR . . . G 7 77.345 121.554 107.426 1 86.71 ? H222 CLR 502 R 1 HETATM 63 H H231 CLR . . . G 7 75.669 122.664 106.127 1 86.71 ? H231 CLR 502 R 1 HETATM 64 H H232 CLR . . . G 7 74.684 121.463 106.39 1 86.71 ? H232 CLR 502 R 1 HETATM 65 H H241 CLR . . . G 7 77.225 121.15 105.056 1 86.71 ? H241 CLR 502 R 1 HETATM 66 H H242 CLR . . . G 7 75.884 121.321 104.25 1 86.71 ? H242 CLR 502 R 1 HETATM 67 H H25 CLR . . . G 7 76.686 119.092 105.748 1 86.71 ? H25 CLR 502 R 1 HETATM 68 H H261 CLR . . . G 7 77.548 119.013 103.666 1 86.71 ? H261 CLR 502 R 1 HETATM 69 H H262 CLR . . . G 7 76.147 119.332 102.99 1 86.71 ? H262 CLR 502 R 1 HETATM 70 H H263 CLR . . . G 7 76.405 117.928 103.669 1 86.71 ? H263 CLR 502 R 1 HETATM 71 H H271 CLR . . . G 7 74.607 117.951 105.293 1 86.71 ? H271 CLR 502 R 1 HETATM 72 H H272 CLR . . . G 7 73.983 119.382 105.017 1 86.71 ? H272 CLR 502 R 1 HETATM 73 H H273 CLR . . . G 7 74.549 119.013 106.452 1 86.71 ? H273 CLR 502 R 1 HETATM 74 H H1 CLR . . . G 7 78.9 130.802 116.292 1 86.71 ? H1 CLR 502 R 1 # _model_server_stats.io_time_ms 15 _model_server_stats.parse_time_ms 13 _model_server_stats.create_model_time_ms 8 _model_server_stats.query_time_ms 292 _model_server_stats.encode_time_ms 37 _model_server_stats.element_count 74 #