data_8YVP
#
_model_server_result.job_id            vJz9KTjaQ1oJlmrksi20jQ 
_model_server_result.datetime_utc      '2025-04-03 04:45:12' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          8yvp 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"EA","auth_seq_id":403}' 
#
_entry.id    8YVP 
#
_exptl.entry_id    8YVP 
_exptl.method      'ELECTRON MICROSCOPY' 
#
_entity.details                     ? 
_entity.formula_weight              119.119 
_entity.id                          16 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            THREONINE 
_entity.pdbx_number_of_molecules    2 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          90 
_cell.angle_gamma         90 
_cell.entry_id            8YVP 
_cell.length_a            1 
_cell.length_b            1 
_cell.length_c            1 
_cell.Z_PDB               ? 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 8YVP 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        1 
_symmetry.space_group_name_Hall    ? 
_symmetry.space_group_name_H-M     'P 1' 
#
_pdbx_struct_assembly.method_details        ? 
_pdbx_struct_assembly.oligomeric_details    28-meric 
_pdbx_struct_assembly.oligomeric_count      28 
_pdbx_struct_assembly.details               author_defined_assembly 
_pdbx_struct_assembly.id                    1 
#
_pdbx_struct_assembly_gen.asym_id_list       A,B,C,D,E,F,G,H,I,J,K,L,M,N,O,P,Q,R,S,T,U,V,W,X,Y,Z,AA,BA,CA,DA,EA,FA,GA,HA,IA,JA 
_pdbx_struct_assembly_gen.assembly_id        1 
_pdbx_struct_assembly_gen.oper_expression    1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    ? 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
loop_
_struct_asym.details
_struct_asym.entity_id
_struct_asym.id
_struct_asym.pdbx_modified
_struct_asym.pdbx_blank_PDB_chainid_flag
? 16 EA N N 
? 16 HA N N 
#
loop_
_struct_conn.conn_type_id
_struct_conn.details
_struct_conn.id
_struct_conn.ptnr1_label_asym_id
_struct_conn.ptnr1_label_atom_id
_struct_conn.ptnr1_label_comp_id
_struct_conn.ptnr1_label_seq_id
_struct_conn.ptnr1_auth_asym_id
_struct_conn.ptnr1_auth_comp_id
_struct_conn.ptnr1_auth_seq_id
_struct_conn.ptnr1_symmetry
_struct_conn.ptnr2_label_asym_id
_struct_conn.ptnr2_label_atom_id
_struct_conn.ptnr2_label_comp_id
_struct_conn.ptnr2_label_seq_id
_struct_conn.ptnr2_auth_asym_id
_struct_conn.ptnr2_auth_comp_id
_struct_conn.ptnr2_auth_seq_id
_struct_conn.ptnr2_symmetry
_struct_conn.pdbx_ptnr1_PDB_ins_code
_struct_conn.pdbx_ptnr1_label_alt_id
_struct_conn.pdbx_ptnr1_standard_comp_id
_struct_conn.pdbx_ptnr2_PDB_ins_code
_struct_conn.pdbx_ptnr2_label_alt_id
_struct_conn.pdbx_ptnr3_PDB_ins_code
_struct_conn.pdbx_ptnr3_label_alt_id
_struct_conn.pdbx_ptnr3_label_asym_id
_struct_conn.pdbx_ptnr3_label_atom_id
_struct_conn.pdbx_ptnr3_label_comp_id
_struct_conn.pdbx_ptnr3_label_seq_id
_struct_conn.pdbx_PDB_id
_struct_conn.pdbx_dist_value
_struct_conn.pdbx_value_order
covale ? covale1 B OG1 THR 1 C THR 1 1_555 CA B1 A1L0D . C A1L0D 401 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.36 ? 
covale ? covale2 DA B1 A1L0D . C A1L0D 402 1_555 EA O THR . C THR 403 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.359 ? 
covale ? covale3 F OG1 THR 1 F THR 1 1_555 FA B1 A1L0D . F A1L0D 401 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.361 ? 
covale ? covale4 H OG1 THR 1 D THR 1 1_555 IA B1 A1L0D . D A1L0D 403 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.359 ? 
covale ? covale5 GA B1 A1L0D . D A1L0D 401 1_555 HA O THR . D THR 402 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.359 ? 
covale ? covale6 Y OG1 THR 1 A THR 1 1_555 JA B1 A1L0D . A A1L0D 401 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.361 ? 
#
_chem_comp.formula           'C4 H9 N O3' 
_chem_comp.formula_weight    119.119 
_chem_comp.id                THR 
_chem_comp.mon_nstd_flag     y 
_chem_comp.name              THREONINE 
_chem_comp.type              'l-peptide linking' 
_chem_comp.pdbx_synonyms     ? 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
N CA THR sing 341 n n 
N H THR sing 342 n n 
N H2 THR sing 343 n n 
CA C THR sing 344 n n 
CA CB THR sing 345 n n 
CA HA THR sing 346 n n 
C O THR doub 347 n n 
C OXT THR sing 348 n n 
CB OG1 THR sing 349 n n 
CB CG2 THR sing 350 n n 
CB HB THR sing 351 n n 
OG1 HG1 THR sing 352 n n 
CG2 HG21 THR sing 353 n n 
CG2 HG22 THR sing 354 n n 
CG2 HG23 THR sing 355 n n 
OXT HXT THR sing 356 n n 
#
_atom_sites.entry_id                     8YVP 
_atom_sites.fract_transf_matrix[1][1]    1 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    1 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    1 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
CA 15 A1L0D C 1 401 301 A1L0D L0D . 
DA 15 A1L0D C 1 402 303 A1L0D L0D . 
EA 16 THR C 1 403 304 THR THR . 
FA 15 A1L0D F 1 401 301 A1L0D L0D . 
GA 15 A1L0D D 1 401 301 A1L0D L0D . 
HA 16 THR D 1 402 302 THR THR . 
IA 15 A1L0D D 1 403 303 A1L0D L0D . 
JA 15 A1L0D A 1 401 301 A1L0D L0D . 
#
_atom_site.group_PDB             HETATM 
_atom_site.id                    1 
_atom_site.type_symbol           O 
_atom_site.label_atom_id         O 
_atom_site.label_comp_id         THR 
_atom_site.label_seq_id          . 
_atom_site.label_alt_id          . 
_atom_site.pdbx_PDB_ins_code     . 
_atom_site.label_asym_id         EA 
_atom_site.label_entity_id       16 
_atom_site.Cartn_x               180.821 
_atom_site.Cartn_y               162.687 
_atom_site.Cartn_z               129.073 
_atom_site.occupancy             1 
_atom_site.B_iso_or_equiv        259.22 
_atom_site.pdbx_formal_charge    ? 
_atom_site.auth_atom_id          O 
_atom_site.auth_comp_id          THR 
_atom_site.auth_seq_id           403 
_atom_site.auth_asym_id          C 
_atom_site.pdbx_PDB_model_num    1 
#
_model_server_stats.io_time_ms              25 
_model_server_stats.parse_time_ms           23 
_model_server_stats.create_model_time_ms    50 
_model_server_stats.query_time_ms           315 
_model_server_stats.encode_time_ms          3 
_model_server_stats.element_count           1 
#