data_8YVV # _model_server_result.job_id -wshJIdRjkwlCIzEIiB_nA _model_server_result.datetime_utc '2024-11-26 04:43:47' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 8yvv # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"F","auth_seq_id":701}' # _entry.id 8YVV # _exptl.entry_id 8YVV _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 62.068 _entity.id 3 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 1,2-ETHANEDIOL _entity.pdbx_number_of_molecules 4 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 8YVV _cell.length_a 46.686 _cell.length_b 102.995 _cell.length_c 117.543 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? # _symmetry.entry_id 8YVV _symmetry.cell_setting ? _symmetry.Int_Tables_number 19 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 21 21 21' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J,K _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 3 D N N ? 3 E N N ? 3 F N N ? 3 G N N # _chem_comp.formula 'C2 H6 O2' _chem_comp.formula_weight 62.068 _chem_comp.id EDO _chem_comp.mon_nstd_flag . _chem_comp.name 1,2-ETHANEDIOL _chem_comp.type non-polymer _chem_comp.pdbx_synonyms 'ETHYLENE GLYCOL' # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C1 O1 EDO sing 83 n n C1 C2 EDO sing 84 n n C1 H11 EDO sing 85 n n C1 H12 EDO sing 86 n n O1 HO1 EDO sing 87 n n C2 O2 EDO sing 88 n n C2 H21 EDO sing 89 n n C2 H22 EDO sing 90 n n O2 HO2 EDO sing 91 n n # _atom_sites.entry_id 8YVV _atom_sites.fract_transf_matrix[1][1] 0.02142 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.009709 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.008508 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 2 PEG A 1 701 702 PEG PEG . D 3 EDO A 1 702 703 EDO EDO . E 3 EDO A 1 703 704 EDO EDO . F 3 EDO B 1 701 701 EDO EDO . G 3 EDO B 1 702 701 EDO EDO . H 4 CL B 1 703 1 CL CL . I 4 CL B 1 704 2 CL CL . J 5 HOH A 1 801 67 HOH HOH . J 5 HOH A 2 802 22 HOH HOH . J 5 HOH A 3 803 171 HOH HOH . J 5 HOH A 4 804 181 HOH HOH . J 5 HOH A 5 805 210 HOH HOH . J 5 HOH A 6 806 214 HOH HOH . J 5 HOH A 7 807 7 HOH HOH . J 5 HOH A 8 808 57 HOH HOH . J 5 HOH A 9 809 90 HOH HOH . J 5 HOH A 10 810 219 HOH HOH . J 5 HOH A 11 811 30 HOH HOH . J 5 HOH A 12 812 49 HOH HOH . J 5 HOH A 13 813 155 HOH HOH . J 5 HOH A 14 814 34 HOH HOH . J 5 HOH A 15 815 51 HOH HOH . J 5 HOH A 16 816 197 HOH HOH . J 5 HOH A 17 817 161 HOH HOH . J 5 HOH A 18 818 50 HOH HOH . J 5 HOH A 19 819 111 HOH HOH . J 5 HOH A 20 820 133 HOH HOH . J 5 HOH A 21 821 66 HOH HOH . J 5 HOH A 22 822 25 HOH HOH . J 5 HOH A 23 823 71 HOH HOH . J 5 HOH A 24 824 29 HOH HOH . J 5 HOH A 25 825 162 HOH HOH . J 5 HOH A 26 826 211 HOH HOH . J 5 HOH A 27 827 20 HOH HOH . J 5 HOH A 28 828 14 HOH HOH . J 5 HOH A 29 829 160 HOH HOH . J 5 HOH A 30 830 12 HOH HOH . J 5 HOH A 31 831 47 HOH HOH . J 5 HOH A 32 832 42 HOH HOH . J 5 HOH A 33 833 173 HOH HOH . J 5 HOH A 34 834 19 HOH HOH . J 5 HOH A 35 835 5 HOH HOH . J 5 HOH A 36 836 195 HOH HOH . J 5 HOH A 37 837 95 HOH HOH . J 5 HOH A 38 838 194 HOH HOH . J 5 HOH A 39 839 89 HOH HOH . J 5 HOH A 40 840 140 HOH HOH . J 5 HOH A 41 841 18 HOH HOH . J 5 HOH A 42 842 70 HOH HOH . J 5 HOH A 43 843 76 HOH HOH . J 5 HOH A 44 844 189 HOH HOH . J 5 HOH A 45 845 82 HOH HOH . J 5 HOH A 46 846 172 HOH HOH . J 5 HOH A 47 847 26 HOH HOH . J 5 HOH A 48 848 168 HOH HOH . J 5 HOH A 49 849 188 HOH HOH . J 5 HOH A 50 850 148 HOH HOH . J 5 HOH A 51 851 80 HOH HOH . J 5 HOH A 52 852 143 HOH HOH . J 5 HOH A 53 853 96 HOH HOH . J 5 HOH A 54 854 198 HOH HOH . J 5 HOH A 55 855 167 HOH HOH . J 5 HOH A 56 856 139 HOH HOH . J 5 HOH A 57 857 115 HOH HOH . J 5 HOH A 58 858 9 HOH HOH . J 5 HOH A 59 859 88 HOH HOH . J 5 HOH A 60 860 33 HOH HOH . J 5 HOH A 61 861 208 HOH HOH . J 5 HOH A 62 862 203 HOH HOH . J 5 HOH A 63 863 55 HOH HOH . J 5 HOH A 64 864 151 HOH HOH . J 5 HOH A 65 865 169 HOH HOH . J 5 HOH A 66 866 170 HOH HOH . J 5 HOH A 67 867 178 HOH HOH . J 5 HOH A 68 868 99 HOH HOH . J 5 HOH A 69 869 54 HOH HOH . J 5 HOH A 70 870 201 HOH HOH . J 5 HOH A 71 871 137 HOH HOH . J 5 HOH A 72 872 62 HOH HOH . J 5 HOH A 73 873 204 HOH HOH . J 5 HOH A 74 874 177 HOH HOH . J 5 HOH A 75 875 68 HOH HOH . J 5 HOH A 76 876 6 HOH HOH . J 5 HOH A 77 877 38 HOH HOH . J 5 HOH A 78 878 142 HOH HOH . J 5 HOH A 79 879 136 HOH HOH . J 5 HOH A 80 880 138 HOH HOH . J 5 HOH A 81 881 58 HOH HOH . J 5 HOH A 82 882 35 HOH HOH . J 5 HOH A 83 883 73 HOH HOH . J 5 HOH A 84 884 32 HOH HOH . J 5 HOH A 85 885 2 HOH HOH . J 5 HOH A 86 886 207 HOH HOH . J 5 HOH A 87 887 216 HOH HOH . J 5 HOH A 88 888 175 HOH HOH . J 5 HOH A 89 889 182 HOH HOH . J 5 HOH A 90 890 79 HOH HOH . J 5 HOH A 91 891 60 HOH HOH . J 5 HOH A 92 892 74 HOH HOH . J 5 HOH A 93 893 217 HOH HOH . J 5 HOH A 94 894 78 HOH HOH . J 5 HOH A 95 895 24 HOH HOH . J 5 HOH A 96 896 77 HOH HOH . J 5 HOH A 97 897 212 HOH HOH . J 5 HOH A 98 898 152 HOH HOH . J 5 HOH A 99 899 3 HOH HOH . J 5 HOH A 100 900 23 HOH HOH . J 5 HOH A 101 901 46 HOH HOH . J 5 HOH A 102 902 15 HOH HOH . J 5 HOH A 103 903 159 HOH HOH . J 5 HOH A 104 904 213 HOH HOH . J 5 HOH A 105 905 153 HOH HOH . J 5 HOH A 106 906 183 HOH HOH . J 5 HOH A 107 907 134 HOH HOH . J 5 HOH A 108 908 28 HOH HOH . J 5 HOH A 109 909 135 HOH HOH . J 5 HOH A 110 910 63 HOH HOH . J 5 HOH A 111 911 87 HOH HOH . J 5 HOH A 112 912 83 HOH HOH . J 5 HOH A 113 913 130 HOH HOH . J 5 HOH A 114 914 81 HOH HOH . J 5 HOH A 115 915 97 HOH HOH . J 5 HOH A 116 916 92 HOH HOH . J 5 HOH A 117 917 93 HOH HOH . J 5 HOH A 118 918 200 HOH HOH . J 5 HOH A 119 919 94 HOH HOH . J 5 HOH A 120 920 154 HOH HOH . J 5 HOH A 121 921 86 HOH HOH . J 5 HOH A 122 922 75 HOH HOH . J 5 HOH A 123 923 84 HOH HOH . K 5 HOH B 1 801 180 HOH HOH . K 5 HOH B 2 802 52 HOH HOH . K 5 HOH B 3 803 117 HOH HOH . K 5 HOH B 4 804 116 HOH HOH . K 5 HOH B 5 805 109 HOH HOH . K 5 HOH B 6 806 145 HOH HOH . K 5 HOH B 7 807 53 HOH HOH . K 5 HOH B 8 808 118 HOH HOH . K 5 HOH B 9 809 163 HOH HOH . K 5 HOH B 10 810 44 HOH HOH . K 5 HOH B 11 811 13 HOH HOH . K 5 HOH B 12 812 199 HOH HOH . K 5 HOH B 13 813 126 HOH HOH . K 5 HOH B 14 814 36 HOH HOH . K 5 HOH B 15 815 202 HOH HOH . K 5 HOH B 16 816 103 HOH HOH . K 5 HOH B 17 817 196 HOH HOH . K 5 HOH B 18 818 37 HOH HOH . K 5 HOH B 19 819 165 HOH HOH . K 5 HOH B 20 820 65 HOH HOH . K 5 HOH B 21 821 48 HOH HOH . K 5 HOH B 22 822 187 HOH HOH . K 5 HOH B 23 823 105 HOH HOH . K 5 HOH B 24 824 56 HOH HOH . K 5 HOH B 25 825 191 HOH HOH . K 5 HOH B 26 826 17 HOH HOH . K 5 HOH B 27 827 221 HOH HOH . K 5 HOH B 28 828 184 HOH HOH . K 5 HOH B 29 829 141 HOH HOH . K 5 HOH B 30 830 104 HOH HOH . K 5 HOH B 31 831 164 HOH HOH . K 5 HOH B 32 832 113 HOH HOH . K 5 HOH B 33 833 158 HOH HOH . K 5 HOH B 34 834 114 HOH HOH . K 5 HOH B 35 835 107 HOH HOH . K 5 HOH B 36 836 69 HOH HOH . K 5 HOH B 37 837 43 HOH HOH . K 5 HOH B 38 838 125 HOH HOH . K 5 HOH B 39 839 218 HOH HOH . K 5 HOH B 40 840 120 HOH HOH . K 5 HOH B 41 841 39 HOH HOH . K 5 HOH B 42 842 41 HOH HOH . K 5 HOH B 43 843 220 HOH HOH . K 5 HOH B 44 844 144 HOH HOH . K 5 HOH B 45 845 91 HOH HOH . K 5 HOH B 46 846 157 HOH HOH . K 5 HOH B 47 847 127 HOH HOH . K 5 HOH B 48 848 10 HOH HOH . K 5 HOH B 49 849 166 HOH HOH . K 5 HOH B 50 850 72 HOH HOH . K 5 HOH B 51 851 8 HOH HOH . K 5 HOH B 52 852 112 HOH HOH . K 5 HOH B 53 853 21 HOH HOH . K 5 HOH B 54 854 106 HOH HOH . K 5 HOH B 55 855 192 HOH HOH . K 5 HOH B 56 856 150 HOH HOH . K 5 HOH B 57 857 128 HOH HOH . K 5 HOH B 58 858 61 HOH HOH . K 5 HOH B 59 859 119 HOH HOH . K 5 HOH B 60 860 185 HOH HOH . K 5 HOH B 61 861 147 HOH HOH . K 5 HOH B 62 862 176 HOH HOH . K 5 HOH B 63 863 123 HOH HOH . K 5 HOH B 64 864 129 HOH HOH . K 5 HOH B 65 865 40 HOH HOH . K 5 HOH B 66 866 215 HOH HOH . K 5 HOH B 67 867 45 HOH HOH . K 5 HOH B 68 868 100 HOH HOH . K 5 HOH B 69 869 1 HOH HOH . K 5 HOH B 70 870 124 HOH HOH . K 5 HOH B 71 871 64 HOH HOH . K 5 HOH B 72 872 31 HOH HOH . K 5 HOH B 73 873 205 HOH HOH . K 5 HOH B 74 874 110 HOH HOH . K 5 HOH B 75 875 206 HOH HOH . K 5 HOH B 76 876 190 HOH HOH . K 5 HOH B 77 877 186 HOH HOH . K 5 HOH B 78 878 193 HOH HOH . K 5 HOH B 79 879 27 HOH HOH . K 5 HOH B 80 880 4 HOH HOH . K 5 HOH B 81 881 85 HOH HOH . K 5 HOH B 82 882 132 HOH HOH . K 5 HOH B 83 883 11 HOH HOH . K 5 HOH B 84 884 174 HOH HOH . K 5 HOH B 85 885 146 HOH HOH . K 5 HOH B 86 886 59 HOH HOH . K 5 HOH B 87 887 16 HOH HOH . K 5 HOH B 88 888 121 HOH HOH . K 5 HOH B 89 889 149 HOH HOH . K 5 HOH B 90 890 156 HOH HOH . K 5 HOH B 91 891 98 HOH HOH . K 5 HOH B 92 892 102 HOH HOH . K 5 HOH B 93 893 179 HOH HOH . K 5 HOH B 94 894 108 HOH HOH . K 5 HOH B 95 895 122 HOH HOH . K 5 HOH B 96 896 101 HOH HOH . K 5 HOH B 97 897 131 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 EDO . . . F 3 5.938 43.794 -28.963 1 77.28 0 C1 EDO 701 B 1 HETATM 2 O O1 EDO . . . F 3 6.081 42.397 -28.771 1 79.22 0 O1 EDO 701 B 1 HETATM 3 C C2 EDO . . . F 3 4.824 44.383 -28.178 1 77.17 0 C2 EDO 701 B 1 HETATM 4 O O2 EDO . . . F 3 5.256 45.27 -27.164 1 74.8 0 O2 EDO 701 B 1 # _model_server_stats.io_time_ms 9 _model_server_stats.parse_time_ms 28 _model_server_stats.create_model_time_ms 6 _model_server_stats.query_time_ms 303 _model_server_stats.encode_time_ms 2 _model_server_stats.element_count 4 #