data_8YWP
#
_model_server_result.job_id            C9Q3Wi22tDzRZcFtPkb-RA 
_model_server_result.datetime_utc      '2024-11-30 23:57:44' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          8ywp 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"E","auth_seq_id":1003}' 
#
_entry.id    8YWP 
#
_exptl.entry_id    8YWP 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              92.094 
_entity.id                          3 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            GLYCEROL 
_entity.pdbx_number_of_molecules    2 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          90 
_cell.angle_gamma         120 
_cell.entry_id            8YWP 
_cell.length_a            126.36 
_cell.length_b            126.36 
_cell.length_c            143.36 
_cell.Z_PDB               12 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 8YWP 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        180 
_symmetry.space_group_name_Hall    'P 62 2 (x,y,z+1/3)' 
_symmetry.space_group_name_H-M     'P 62 2 2' 
#
_pdbx_struct_assembly.method_details        PISA 
_pdbx_struct_assembly.oligomeric_details    dimeric 
_pdbx_struct_assembly.oligomeric_count      2 
_pdbx_struct_assembly.details               author_and_software_defined_assembly 
_pdbx_struct_assembly.id                    1 
#
_pdbx_struct_assembly_gen.asym_id_list       A,B,C,D,E,F,G 
_pdbx_struct_assembly_gen.assembly_id        1 
_pdbx_struct_assembly_gen.oper_expression    1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    x,y,z 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
loop_
_struct_asym.details
_struct_asym.entity_id
_struct_asym.id
_struct_asym.pdbx_modified
_struct_asym.pdbx_blank_PDB_chainid_flag
? 3 C N N 
? 3 E N N 
#
loop_
_struct_conn.conn_type_id
_struct_conn.details
_struct_conn.id
_struct_conn.ptnr1_label_asym_id
_struct_conn.ptnr1_label_atom_id
_struct_conn.ptnr1_label_comp_id
_struct_conn.ptnr1_label_seq_id
_struct_conn.ptnr1_auth_asym_id
_struct_conn.ptnr1_auth_comp_id
_struct_conn.ptnr1_auth_seq_id
_struct_conn.ptnr1_symmetry
_struct_conn.ptnr2_label_asym_id
_struct_conn.ptnr2_label_atom_id
_struct_conn.ptnr2_label_comp_id
_struct_conn.ptnr2_label_seq_id
_struct_conn.ptnr2_auth_asym_id
_struct_conn.ptnr2_auth_comp_id
_struct_conn.ptnr2_auth_seq_id
_struct_conn.ptnr2_symmetry
_struct_conn.pdbx_ptnr1_PDB_ins_code
_struct_conn.pdbx_ptnr1_label_alt_id
_struct_conn.pdbx_ptnr1_standard_comp_id
_struct_conn.pdbx_ptnr2_PDB_ins_code
_struct_conn.pdbx_ptnr2_label_alt_id
_struct_conn.pdbx_ptnr3_PDB_ins_code
_struct_conn.pdbx_ptnr3_label_alt_id
_struct_conn.pdbx_ptnr3_label_asym_id
_struct_conn.pdbx_ptnr3_label_atom_id
_struct_conn.pdbx_ptnr3_label_comp_id
_struct_conn.pdbx_ptnr3_label_seq_id
_struct_conn.pdbx_PDB_id
_struct_conn.pdbx_dist_value
_struct_conn.pdbx_value_order
disulf ? disulf1 A SG CYS 22 H CYS 22 1_555 A SG CYS 97 H CYS 97 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.037 ? 
disulf ? disulf2 A SG CYS 151 H CYS 151 1_555 A SG CYS 207 H CYS 207 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.026 ? 
disulf ? disulf3 A SG CYS 227 H CYS 227 1_555 B SG CYS 214 L CYS 214 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.031 ? 
disulf ? disulf4 B SG CYS 23 L CYS 23 1_555 B SG CYS 88 L CYS 88 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.033 ? 
disulf ? disulf5 B SG CYS 134 L CYS 134 1_555 B SG CYS 194 L CYS 194 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.034 ? 
#
_chem_comp.formula           'C3 H8 O3' 
_chem_comp.formula_weight    92.094 
_chem_comp.id                GOL 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              GLYCEROL 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     GLYCERIN;PROPANE-1,2,3-TRIOL 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
C1 O1 GOL sing 129 n n 
C1 C2 GOL sing 130 n n 
C1 H11 GOL sing 131 n n 
C1 H12 GOL sing 132 n n 
O1 HO1 GOL sing 133 n n 
C2 O2 GOL sing 134 n n 
C2 C3 GOL sing 135 n n 
C2 H2 GOL sing 136 n n 
O2 HO2 GOL sing 137 n n 
C3 O3 GOL sing 138 n n 
C3 H31 GOL sing 139 n n 
C3 H32 GOL sing 140 n n 
O3 HO3 GOL sing 141 n n 
#
_atom_sites.entry_id                     8YWP 
_atom_sites.fract_transf_matrix[1][1]    0.007914 
_atom_sites.fract_transf_matrix[1][2]    0.004569 
_atom_sites.fract_transf_matrix[1][3]    0 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.009138 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.006975 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
C 3 GOL L 1 1001 1001 GOL GOL . 
D 4 PGE L 1 1002 1002 PGE PGE . 
E 3 GOL L 1 1003 1001 GOL GOL . 
F 5 HOH H 1 301 1045 HOH HOH . 
F 5 HOH H 2 302 1037 HOH HOH . 
F 5 HOH H 3 303 1015 HOH HOH . 
F 5 HOH H 4 304 1047 HOH HOH . 
F 5 HOH H 5 305 1039 HOH HOH . 
F 5 HOH H 6 306 1035 HOH HOH . 
F 5 HOH H 7 307 1029 HOH HOH . 
F 5 HOH H 8 308 1005 HOH HOH . 
F 5 HOH H 9 309 1049 HOH HOH . 
F 5 HOH H 10 310 1021 HOH HOH . 
F 5 HOH H 11 311 1053 HOH HOH . 
F 5 HOH H 12 312 1018 HOH HOH . 
F 5 HOH H 13 313 1054 HOH HOH . 
F 5 HOH H 14 314 1031 HOH HOH . 
F 5 HOH H 15 315 1038 HOH HOH . 
F 5 HOH H 16 316 1028 HOH HOH . 
F 5 HOH H 17 317 1004 HOH HOH . 
F 5 HOH H 18 318 1007 HOH HOH . 
F 5 HOH H 19 319 1011 HOH HOH . 
F 5 HOH H 20 320 1042 HOH HOH . 
F 5 HOH H 21 321 1010 HOH HOH . 
F 5 HOH H 22 322 1058 HOH HOH . 
F 5 HOH H 23 323 1012 HOH HOH . 
F 5 HOH H 24 324 1019 HOH HOH . 
F 5 HOH H 25 325 1006 HOH HOH . 
F 5 HOH H 26 326 1014 HOH HOH . 
F 5 HOH H 27 327 1046 HOH HOH . 
F 5 HOH H 28 328 1044 HOH HOH . 
F 5 HOH H 29 329 1041 HOH HOH . 
F 5 HOH H 30 330 1022 HOH HOH . 
F 5 HOH H 31 331 1033 HOH HOH . 
F 5 HOH H 32 332 1050 HOH HOH . 
F 5 HOH H 33 333 1009 HOH HOH . 
F 5 HOH H 34 334 1024 HOH HOH . 
F 5 HOH H 35 335 1055 HOH HOH . 
F 5 HOH H 36 336 1008 HOH HOH . 
F 5 HOH H 37 337 1040 HOH HOH . 
F 5 HOH H 38 338 1056 HOH HOH . 
F 5 HOH H 39 339 1060 HOH HOH . 
F 5 HOH H 40 340 1013 HOH HOH . 
F 5 HOH H 41 341 1025 HOH HOH . 
F 5 HOH H 42 342 1010 HOH HOH . 
F 5 HOH H 43 343 1026 HOH HOH . 
F 5 HOH H 44 344 1043 HOH HOH . 
F 5 HOH H 45 345 1017 HOH HOH . 
F 5 HOH H 46 346 1032 HOH HOH . 
F 5 HOH H 47 347 1036 HOH HOH . 
F 5 HOH H 48 348 1059 HOH HOH . 
F 5 HOH H 49 349 1023 HOH HOH . 
F 5 HOH H 50 350 1057 HOH HOH . 
F 5 HOH H 51 351 1034 HOH HOH . 
F 5 HOH H 52 352 1027 HOH HOH . 
F 5 HOH H 53 353 1016 HOH HOH . 
F 5 HOH H 54 354 1030 HOH HOH . 
F 5 HOH H 55 355 1003 HOH HOH . 
F 5 HOH H 56 356 1020 HOH HOH . 
F 5 HOH H 57 357 1051 HOH HOH . 
G 5 HOH L 1 1101 1003 HOH HOH . 
G 5 HOH L 2 1102 1071 HOH HOH . 
G 5 HOH L 3 1103 1069 HOH HOH . 
G 5 HOH L 4 1104 1005 HOH HOH . 
G 5 HOH L 5 1105 1036 HOH HOH . 
G 5 HOH L 6 1106 1065 HOH HOH . 
G 5 HOH L 7 1107 1061 HOH HOH . 
G 5 HOH L 8 1108 1076 HOH HOH . 
G 5 HOH L 9 1109 1029 HOH HOH . 
G 5 HOH L 10 1110 1055 HOH HOH . 
G 5 HOH L 11 1111 1064 HOH HOH . 
G 5 HOH L 12 1112 1045 HOH HOH . 
G 5 HOH L 13 1113 1050 HOH HOH . 
G 5 HOH L 14 1114 1041 HOH HOH . 
G 5 HOH L 15 1115 1035 HOH HOH . 
G 5 HOH L 16 1116 1025 HOH HOH . 
G 5 HOH L 17 1117 1044 HOH HOH . 
G 5 HOH L 18 1118 1023 HOH HOH . 
G 5 HOH L 19 1119 1048 HOH HOH . 
G 5 HOH L 20 1120 1047 HOH HOH . 
G 5 HOH L 21 1121 1037 HOH HOH . 
G 5 HOH L 22 1122 1002 HOH HOH . 
G 5 HOH L 23 1123 1042 HOH HOH . 
G 5 HOH L 24 1124 1067 HOH HOH . 
G 5 HOH L 25 1125 1004 HOH HOH . 
G 5 HOH L 26 1126 1008 HOH HOH . 
G 5 HOH L 27 1127 1034 HOH HOH . 
G 5 HOH L 28 1128 1077 HOH HOH . 
G 5 HOH L 29 1129 1073 HOH HOH . 
G 5 HOH L 30 1130 1074 HOH HOH . 
G 5 HOH L 31 1131 1006 HOH HOH . 
G 5 HOH L 32 1132 1075 HOH HOH . 
G 5 HOH L 33 1133 1053 HOH HOH . 
G 5 HOH L 34 1134 1009 HOH HOH . 
G 5 HOH L 35 1135 1066 HOH HOH . 
G 5 HOH L 36 1136 1060 HOH HOH . 
G 5 HOH L 37 1137 1068 HOH HOH . 
G 5 HOH L 38 1138 1062 HOH HOH . 
G 5 HOH L 39 1139 1059 HOH HOH . 
G 5 HOH L 40 1140 1030 HOH HOH . 
G 5 HOH L 41 1141 1033 HOH HOH . 
G 5 HOH L 42 1142 1040 HOH HOH . 
G 5 HOH L 43 1143 1012 HOH HOH . 
G 5 HOH L 44 1144 1039 HOH HOH . 
G 5 HOH L 45 1145 1048 HOH HOH . 
G 5 HOH L 46 1146 1015 HOH HOH . 
G 5 HOH L 47 1147 1051 HOH HOH . 
G 5 HOH L 48 1148 1027 HOH HOH . 
G 5 HOH L 49 1149 1014 HOH HOH . 
G 5 HOH L 50 1150 1043 HOH HOH . 
G 5 HOH L 51 1151 1057 HOH HOH . 
G 5 HOH L 52 1152 1056 HOH HOH . 
G 5 HOH L 53 1153 1063 HOH HOH . 
G 5 HOH L 54 1154 1026 HOH HOH . 
G 5 HOH L 55 1155 1019 HOH HOH . 
G 5 HOH L 56 1156 1032 HOH HOH . 
G 5 HOH L 57 1157 1024 HOH HOH . 
G 5 HOH L 58 1158 1052 HOH HOH . 
G 5 HOH L 59 1159 1046 HOH HOH . 
G 5 HOH L 60 1160 1013 HOH HOH . 
G 5 HOH L 61 1161 1007 HOH HOH . 
G 5 HOH L 62 1162 1021 HOH HOH . 
G 5 HOH L 63 1163 1049 HOH HOH . 
G 5 HOH L 64 1164 1020 HOH HOH . 
G 5 HOH L 65 1165 1011 HOH HOH . 
G 5 HOH L 66 1166 1078 HOH HOH . 
G 5 HOH L 67 1167 1017 HOH HOH . 
G 5 HOH L 68 1168 1052 HOH HOH . 
G 5 HOH L 69 1169 1070 HOH HOH . 
G 5 HOH L 70 1170 1031 HOH HOH . 
G 5 HOH L 71 1171 1018 HOH HOH . 
G 5 HOH L 72 1172 1061 HOH HOH . 
G 5 HOH L 73 1173 1022 HOH HOH . 
G 5 HOH L 74 1174 1054 HOH HOH . 
G 5 HOH L 75 1175 1016 HOH HOH . 
G 5 HOH L 76 1176 1028 HOH HOH . 
G 5 HOH L 77 1177 1072 HOH HOH . 
G 5 HOH L 78 1178 1058 HOH HOH . 
G 5 HOH L 79 1179 1038 HOH HOH . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 C C1 GOL . . . E 3 40.08 21.122 99.305 1 37.29 ? C1 GOL 1003 L 1 
HETATM 2 O O1 GOL . . . E 3 41.427 21.15 98.938 1 40.57 ? O1 GOL 1003 L 1 
HETATM 3 C C2 GOL . . . E 3 39.777 22.369 100.184 1 36.33 ? C2 GOL 1003 L 1 
HETATM 4 O O2 GOL . . . E 3 38.636 23.033 99.763 1 35.14 ? O2 GOL 1003 L 1 
HETATM 5 C C3 GOL . . . E 3 41.048 23.258 100.121 1 37.93 ? C3 GOL 1003 L 1 
HETATM 6 O O3 GOL . . . E 3 40.644 24.532 99.722 1 36.57 ? O3 GOL 1003 L 1 
#
_model_server_stats.io_time_ms              19 
_model_server_stats.parse_time_ms           17 
_model_server_stats.create_model_time_ms    12 
_model_server_stats.query_time_ms           326 
_model_server_stats.encode_time_ms          4 
_model_server_stats.element_count           6 
#