data_8YX4
#
_model_server_result.job_id            a4W5P48FO5vb4DiNVGaWzw 
_model_server_result.datetime_utc      '2025-06-22 12:39:53' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          8yx4 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"L","auth_seq_id":411}' 
#
_entry.id    8YX4 
#
_exptl.entry_id    8YX4 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              112.411 
_entity.id                          5 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            'CADMIUM ION' 
_entity.pdbx_number_of_molecules    6 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          90 
_cell.angle_gamma         90 
_cell.entry_id            8YX4 
_cell.length_a            112.48 
_cell.length_b            112.48 
_cell.length_c            219.85 
_cell.Z_PDB               16 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 8YX4 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        98 
_symmetry.space_group_name_Hall    ? 
_symmetry.space_group_name_H-M     'I 41 2 2' 
#
_pdbx_struct_assembly.method_details        ? 
_pdbx_struct_assembly.oligomeric_details    monomeric 
_pdbx_struct_assembly.oligomeric_count      1 
_pdbx_struct_assembly.details               author_defined_assembly 
_pdbx_struct_assembly.id                    1 
#
_pdbx_struct_assembly_gen.asym_id_list       A,B,C,D,E,F,G,H,I,J,K,L,M,N,O,P 
_pdbx_struct_assembly_gen.assembly_id        1 
_pdbx_struct_assembly_gen.oper_expression    1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    x,y,z 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
loop_
_struct_asym.details
_struct_asym.entity_id
_struct_asym.id
_struct_asym.pdbx_modified
_struct_asym.pdbx_blank_PDB_chainid_flag
? 5 G N N 
? 5 H N N 
? 5 I N N 
? 5 J N N 
? 5 K N N 
? 5 L N N 
#
loop_
_struct_conn.conn_type_id
_struct_conn.details
_struct_conn.id
_struct_conn.ptnr1_label_asym_id
_struct_conn.ptnr1_label_atom_id
_struct_conn.ptnr1_label_comp_id
_struct_conn.ptnr1_label_seq_id
_struct_conn.ptnr1_auth_asym_id
_struct_conn.ptnr1_auth_comp_id
_struct_conn.ptnr1_auth_seq_id
_struct_conn.ptnr1_symmetry
_struct_conn.ptnr2_label_asym_id
_struct_conn.ptnr2_label_atom_id
_struct_conn.ptnr2_label_comp_id
_struct_conn.ptnr2_label_seq_id
_struct_conn.ptnr2_auth_asym_id
_struct_conn.ptnr2_auth_comp_id
_struct_conn.ptnr2_auth_seq_id
_struct_conn.ptnr2_symmetry
_struct_conn.pdbx_ptnr1_PDB_ins_code
_struct_conn.pdbx_ptnr1_label_alt_id
_struct_conn.pdbx_ptnr1_standard_comp_id
_struct_conn.pdbx_ptnr2_PDB_ins_code
_struct_conn.pdbx_ptnr2_label_alt_id
_struct_conn.pdbx_ptnr3_PDB_ins_code
_struct_conn.pdbx_ptnr3_label_alt_id
_struct_conn.pdbx_ptnr3_label_asym_id
_struct_conn.pdbx_ptnr3_label_atom_id
_struct_conn.pdbx_ptnr3_label_comp_id
_struct_conn.pdbx_ptnr3_label_seq_id
_struct_conn.pdbx_PDB_id
_struct_conn.pdbx_dist_value
_struct_conn.pdbx_value_order
metalc ? metalc1 A OD1 ASP 63 A ASP 62 1_555 G CD CD . A CD 406 10_665 ? ? ? ? ? ? ? ? ? ? ? ? 2.328 ? 
metalc ? metalc2 A OD2 ASP 63 A ASP 62 1_555 G CD CD . A CD 406 10_665 ? ? ? ? ? ? ? ? ? ? ? ? 2.687 ? 
metalc ? metalc3 A ND1 HIS 74 A HIS 73 1_555 G CD CD . A CD 406 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.297 ? 
metalc ? metalc4 A ND1 HIS 90 A HIS 89 1_555 K CD CD . A CD 410 15_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.554 ? 
metalc ? metalc5 A OD1 ASP 109 A ASP 108 1_555 K CD CD . A CD 410 15_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.631 ? 
metalc ? metalc6 A OD2 ASP 109 A ASP 108 1_555 K CD CD . A CD 410 15_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.429 ? 
metalc ? metalc7 A NE2 HIS 176 A HIS 175 1_555 H CD CD . A CD 407 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.572 ? 
metalc ? metalc8 A NE2 HIS 256 A HIS 255 1_555 I CD CD . A CD 408 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.659 ? 
metalc ? metalc9 A OE1 GLU 264 A GLU 263 1_555 D ZN ZN . A ZN 403 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.476 ? 
metalc ? metalc10 A SG CYS 271 A CYS 270 1_555 K CD CD . A CD 410 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.617 ? 
metalc ? metalc11 A SG CYS 271 A CYS 270 1_555 L CD CD . A CD 411 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.769 ? 
metalc ? metalc12 A SG CYS 285 A CYS 284 1_555 D ZN ZN . A ZN 403 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.482 ? 
#
_chem_comp.formula           'Cd 2' 
_chem_comp.formula_weight    112.411 
_chem_comp.id                CD 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              'CADMIUM ION' 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     ? 
#
_atom_sites.entry_id                     8YX4 
_atom_sites.fract_transf_matrix[1][1]    0.00889 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.00889 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.004549 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
B 2 A1LZ6 A 1 401 500 A1LZ6 038 . 
C 3 GOL A 1 402 361 GOL GLO . 
D 4 ZN A 1 403 371 ZN ZN . 
E 4 ZN A 1 404 372 ZN ZN . 
F 4 ZN A 1 405 373 ZN ZN . 
G 5 CD A 1 406 381 CD CD . 
H 5 CD A 1 407 382 CD CD . 
I 5 CD A 1 408 383 CD CD . 
J 5 CD A 1 409 384 CD CD . 
K 5 CD A 1 410 385 CD CD . 
L 5 CD A 1 411 386 CD CD . 
M 6 CL A 1 412 391 CL CL . 
N 6 CL A 1 413 392 CL CL . 
O 6 CL A 1 414 393 CL CL . 
P 7 HOH A 1 501 14 HOH HOH . 
P 7 HOH A 2 502 2 HOH HOH . 
P 7 HOH A 3 503 88 HOH HOH . 
P 7 HOH A 4 504 24 HOH HOH . 
P 7 HOH A 5 505 15 HOH HOH . 
P 7 HOH A 6 506 29 HOH HOH . 
P 7 HOH A 7 507 87 HOH HOH . 
P 7 HOH A 8 508 84 HOH HOH . 
P 7 HOH A 9 509 4 HOH HOH . 
P 7 HOH A 10 510 108 HOH HOH . 
P 7 HOH A 11 511 23 HOH HOH . 
P 7 HOH A 12 512 9 HOH HOH . 
P 7 HOH A 13 513 68 HOH HOH . 
P 7 HOH A 14 514 102 HOH HOH . 
P 7 HOH A 15 515 36 HOH HOH . 
P 7 HOH A 16 516 13 HOH HOH . 
P 7 HOH A 17 517 18 HOH HOH . 
P 7 HOH A 18 518 35 HOH HOH . 
P 7 HOH A 19 519 28 HOH HOH . 
P 7 HOH A 20 520 62 HOH HOH . 
P 7 HOH A 21 521 82 HOH HOH . 
P 7 HOH A 22 522 107 HOH HOH . 
P 7 HOH A 23 523 12 HOH HOH . 
P 7 HOH A 24 524 105 HOH HOH . 
P 7 HOH A 25 525 57 HOH HOH . 
P 7 HOH A 26 526 71 HOH HOH . 
P 7 HOH A 27 527 6 HOH HOH . 
P 7 HOH A 28 528 43 HOH HOH . 
P 7 HOH A 29 529 27 HOH HOH . 
P 7 HOH A 30 530 78 HOH HOH . 
P 7 HOH A 31 531 56 HOH HOH . 
P 7 HOH A 32 532 47 HOH HOH . 
P 7 HOH A 33 533 53 HOH HOH . 
P 7 HOH A 34 534 63 HOH HOH . 
P 7 HOH A 35 535 74 HOH HOH . 
P 7 HOH A 36 536 16 HOH HOH . 
P 7 HOH A 37 537 11 HOH HOH . 
P 7 HOH A 38 538 113 HOH HOH . 
P 7 HOH A 39 539 58 HOH HOH . 
P 7 HOH A 40 540 7 HOH HOH . 
P 7 HOH A 41 541 128 HOH HOH . 
P 7 HOH A 42 542 20 HOH HOH . 
P 7 HOH A 43 543 34 HOH HOH . 
P 7 HOH A 44 544 66 HOH HOH . 
P 7 HOH A 45 545 42 HOH HOH . 
P 7 HOH A 46 546 19 HOH HOH . 
P 7 HOH A 47 547 33 HOH HOH . 
P 7 HOH A 48 548 136 HOH HOH . 
P 7 HOH A 49 549 69 HOH HOH . 
P 7 HOH A 50 550 52 HOH HOH . 
P 7 HOH A 51 551 31 HOH HOH . 
P 7 HOH A 52 552 130 HOH HOH . 
P 7 HOH A 53 553 100 HOH HOH . 
P 7 HOH A 54 554 81 HOH HOH . 
P 7 HOH A 55 555 111 HOH HOH . 
P 7 HOH A 56 556 30 HOH HOH . 
P 7 HOH A 57 557 93 HOH HOH . 
P 7 HOH A 58 558 112 HOH HOH . 
P 7 HOH A 59 559 104 HOH HOH . 
P 7 HOH A 60 560 17 HOH HOH . 
P 7 HOH A 61 561 123 HOH HOH . 
P 7 HOH A 62 562 26 HOH HOH . 
P 7 HOH A 63 563 51 HOH HOH . 
P 7 HOH A 64 564 48 HOH HOH . 
P 7 HOH A 65 565 114 HOH HOH . 
P 7 HOH A 66 566 95 HOH HOH . 
P 7 HOH A 67 567 72 HOH HOH . 
P 7 HOH A 68 568 70 HOH HOH . 
P 7 HOH A 69 569 96 HOH HOH . 
P 7 HOH A 70 570 131 HOH HOH . 
P 7 HOH A 71 571 21 HOH HOH . 
P 7 HOH A 72 572 49 HOH HOH . 
P 7 HOH A 73 573 8 HOH HOH . 
P 7 HOH A 74 574 133 HOH HOH . 
P 7 HOH A 75 575 32 HOH HOH . 
P 7 HOH A 76 576 75 HOH HOH . 
P 7 HOH A 77 577 138 HOH HOH . 
P 7 HOH A 78 578 37 HOH HOH . 
P 7 HOH A 79 579 116 HOH HOH . 
P 7 HOH A 80 580 85 HOH HOH . 
P 7 HOH A 81 581 40 HOH HOH . 
P 7 HOH A 82 582 120 HOH HOH . 
P 7 HOH A 83 583 90 HOH HOH . 
P 7 HOH A 84 584 103 HOH HOH . 
P 7 HOH A 85 585 39 HOH HOH . 
P 7 HOH A 86 586 5 HOH HOH . 
P 7 HOH A 87 587 134 HOH HOH . 
P 7 HOH A 88 588 106 HOH HOH . 
P 7 HOH A 89 589 77 HOH HOH . 
P 7 HOH A 90 590 91 HOH HOH . 
P 7 HOH A 91 591 41 HOH HOH . 
P 7 HOH A 92 592 121 HOH HOH . 
P 7 HOH A 93 593 135 HOH HOH . 
P 7 HOH A 94 594 38 HOH HOH . 
P 7 HOH A 95 595 64 HOH HOH . 
P 7 HOH A 96 596 54 HOH HOH . 
P 7 HOH A 97 597 25 HOH HOH . 
P 7 HOH A 98 598 80 HOH HOH . 
P 7 HOH A 99 599 59 HOH HOH . 
P 7 HOH A 100 600 119 HOH HOH . 
P 7 HOH A 101 601 137 HOH HOH . 
P 7 HOH A 102 602 45 HOH HOH . 
P 7 HOH A 103 603 61 HOH HOH . 
P 7 HOH A 104 604 89 HOH HOH . 
P 7 HOH A 105 605 76 HOH HOH . 
P 7 HOH A 106 606 122 HOH HOH . 
P 7 HOH A 107 607 55 HOH HOH . 
P 7 HOH A 108 608 124 HOH HOH . 
P 7 HOH A 109 609 132 HOH HOH . 
P 7 HOH A 110 610 109 HOH HOH . 
P 7 HOH A 111 611 99 HOH HOH . 
P 7 HOH A 112 612 118 HOH HOH . 
P 7 HOH A 113 613 101 HOH HOH . 
P 7 HOH A 114 614 117 HOH HOH . 
P 7 HOH A 115 615 86 HOH HOH . 
P 7 HOH A 116 616 46 HOH HOH . 
P 7 HOH A 117 617 60 HOH HOH . 
P 7 HOH A 118 618 97 HOH HOH . 
#
_atom_site.group_PDB             HETATM 
_atom_site.id                    1 
_atom_site.type_symbol           CD 
_atom_site.label_atom_id         CD 
_atom_site.label_comp_id         CD 
_atom_site.label_seq_id          . 
_atom_site.label_alt_id          . 
_atom_site.pdbx_PDB_ins_code     . 
_atom_site.label_asym_id         L 
_atom_site.label_entity_id       5 
_atom_site.Cartn_x               40.05 
_atom_site.Cartn_y               28.583 
_atom_site.Cartn_z               -5.376 
_atom_site.occupancy             1 
_atom_site.B_iso_or_equiv        82.3 
_atom_site.pdbx_formal_charge    ? 
_atom_site.auth_atom_id          CD 
_atom_site.auth_comp_id          CD 
_atom_site.auth_seq_id           411 
_atom_site.auth_asym_id          A 
_atom_site.pdbx_PDB_model_num    1 
#
_model_server_stats.io_time_ms              66 
_model_server_stats.parse_time_ms           11 
_model_server_stats.create_model_time_ms    6 
_model_server_stats.query_time_ms           325 
_model_server_stats.encode_time_ms          3 
_model_server_stats.element_count           1 
#