data_8YYA # _model_server_result.job_id qaJ3EFakvmuTNcoLrN1MZQ _model_server_result.datetime_utc '2025-05-23 05:42:28' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 8yya # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"B","auth_seq_id":301}' # _entry.id 8YYA # _exptl.entry_id 8YYA _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 130.077 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 5-FLUOROURACIL _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 8YYA _cell.length_a 61.781 _cell.length_b 86.546 _cell.length_c 88.637 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? # _symmetry.entry_id 8YYA _symmetry.cell_setting ? _symmetry.Int_Tables_number 23 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'I 2 2 2' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 2 _struct_asym.id B _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order metalc ? metalc1 A OE2 GLU 8 A GLU 8 1_555 D MN MN . A MN 303 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.988 ? metalc ? metalc2 A OD1 ASP 10 A ASP 10 1_555 C CA CA . A CA 302 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.204 ? metalc ? metalc3 A OD2 ASP 10 A ASP 10 1_555 C CA CA . A CA 302 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.594 ? metalc ? metalc4 A O TYR 12 A TYR 12 1_555 C CA CA . A CA 302 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.461 ? metalc ? metalc5 A OD1 ASN 14 A ASN 14 1_555 C CA CA . A CA 302 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.539 ? metalc ? metalc6 A OD2 ASP 19 A ASP 19 1_555 C CA CA . A CA 302 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.46 ? metalc ? metalc7 A OD1 ASP 19 A ASP 19 1_555 D MN MN . A MN 303 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.173 ? metalc ? metalc8 A NE2 HIS 24 A HIS 24 1_555 D MN MN . A MN 303 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.249 ? # _chem_comp.formula 'C4 H3 F N2 O2' _chem_comp.formula_weight 130.077 _chem_comp.id URF _chem_comp.mon_nstd_flag . _chem_comp.name 5-FLUOROURACIL _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag N1 C2 URF sing 349 n n N1 C6 URF sing 350 n n N1 HN1 URF sing 351 n n C2 N3 URF sing 352 n n C2 O2 URF doub 353 n n N3 C4 URF sing 354 n n N3 HN3 URF sing 355 n n C4 C5 URF sing 356 n n C4 O4 URF doub 357 n n C5 C6 URF doub 358 n n C5 F5 URF sing 359 n n C6 H6 URF sing 360 n n # _atom_sites.entry_id 8YYA _atom_sites.fract_transf_matrix[1][1] 0.016186 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.011555 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.011282 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 URF A 1 301 301 URF URF . C 3 CA A 1 302 1 CA CA . D 4 MN A 1 303 1 MN MN . E 5 SO4 A 1 304 1 SO4 SO4 . F 6 HOH A 1 401 9 HOH HOH . F 6 HOH A 2 402 13 HOH HOH . F 6 HOH A 3 403 4 HOH HOH . F 6 HOH A 4 404 18 HOH HOH . F 6 HOH A 5 405 7 HOH HOH . F 6 HOH A 6 406 3 HOH HOH . F 6 HOH A 7 407 5 HOH HOH . F 6 HOH A 8 408 15 HOH HOH . F 6 HOH A 9 409 2 HOH HOH . F 6 HOH A 10 410 12 HOH HOH . F 6 HOH A 11 411 10 HOH HOH . F 6 HOH A 12 412 1 HOH HOH . F 6 HOH A 13 413 16 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 N N1 URF . . . B 2 10.997 5.925 -6.164 1 16.14 ? N1 URF 301 A 1 HETATM 2 C C2 URF . . . B 2 11.465 6.596 -5.072 1 15.73 ? C2 URF 301 A 1 HETATM 3 N N3 URF . . . B 2 12.511 5.973 -4.425 1 16.45 ? N3 URF 301 A 1 HETATM 4 C C4 URF . . . B 2 13.105 4.762 -4.748 1 16.69 ? C4 URF 301 A 1 HETATM 5 C C5 URF . . . B 2 12.519 4.145 -5.926 1 16.52 ? C5 URF 301 A 1 HETATM 6 C C6 URF . . . B 2 11.516 4.73 -6.589 1 16.06 ? C6 URF 301 A 1 HETATM 7 O O2 URF . . . B 2 11 7.667 -4.695 1 14.31 ? O2 URF 301 A 1 HETATM 8 O O4 URF . . . B 2 14.026 4.29 -4.068 1 16.4 ? O4 URF 301 A 1 HETATM 9 F F5 URF . . . B 2 13.019 2.965 -6.334 1 17.42 ? F5 URF 301 A 1 # _model_server_stats.io_time_ms 10 _model_server_stats.parse_time_ms 21 _model_server_stats.create_model_time_ms 4 _model_server_stats.query_time_ms 314 _model_server_stats.encode_time_ms 4 _model_server_stats.element_count 9 #