data_8YYP # _model_server_result.job_id jO-qlagNEsGIfPjZhjBZow _model_server_result.datetime_utc '2024-11-20 10:35:19' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 8yyp # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"C","auth_seq_id":501}' # _entry.id 8YYP # _exptl.entry_id 8YYP _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 135.127 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description ADENINE _entity.pdbx_number_of_molecules 2 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 8YYP _cell.length_a 84.453 _cell.length_b 84.453 _cell.length_c 133.377 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? # _symmetry.entry_id 8YYP _symmetry.cell_setting ? _symmetry.Int_Tables_number 78 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 43' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 2 C N N ? 2 E N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order metalc ? metalc1 A SG CYS 361 A CYS 361 1_555 D FE HEM . A HEM 502 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.374 ? metalc ? metalc2 B SG CYS 361 B CYS 361 1_555 F FE HEM . B HEM 502 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.43 ? # _chem_comp.formula 'C5 H5 N5' _chem_comp.formula_weight 135.127 _chem_comp.id ADE _chem_comp.mon_nstd_flag . _chem_comp.name ADENINE _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag N9 C8 ADE sing 1 n y N9 C4 ADE sing 2 n y N9 HN9 ADE sing 3 n n C8 N7 ADE doub 4 n y C8 H8 ADE sing 5 n n N7 C5 ADE sing 6 n y C5 C6 ADE sing 7 n y C5 C4 ADE doub 8 n y C6 N6 ADE sing 9 n n C6 N1 ADE doub 10 n y N6 HN61 ADE sing 11 n n N6 HN62 ADE sing 12 n n N1 C2 ADE sing 13 n y C2 N3 ADE doub 14 n y C2 H2 ADE sing 15 n n N3 C4 ADE sing 16 n y # _atom_sites.entry_id 8YYP _atom_sites.fract_transf_matrix[1][1] 0.011841 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.011841 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.007498 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 2 ADE A 1 501 501 ADE ADF . D 3 HEM A 1 502 502 HEM DRG . E 2 ADE B 1 501 501 ADE ADF . F 3 HEM B 1 502 502 HEM DRG . G 4 UYM B 1 503 504 UYM CWW . H 5 HOH A 1 601 178 HOH HOH . H 5 HOH A 2 602 173 HOH HOH . H 5 HOH A 3 603 132 HOH HOH . H 5 HOH A 4 604 133 HOH HOH . H 5 HOH A 5 605 45 HOH HOH . H 5 HOH A 6 606 39 HOH HOH . H 5 HOH A 7 607 146 HOH HOH . H 5 HOH A 8 608 105 HOH HOH . H 5 HOH A 9 609 193 HOH HOH . H 5 HOH A 10 610 151 HOH HOH . H 5 HOH A 11 611 166 HOH HOH . H 5 HOH A 12 612 21 HOH HOH . H 5 HOH A 13 613 65 HOH HOH . H 5 HOH A 14 614 55 HOH HOH . H 5 HOH A 15 615 16 HOH HOH . H 5 HOH A 16 616 74 HOH HOH . H 5 HOH A 17 617 56 HOH HOH . H 5 HOH A 18 618 128 HOH HOH . H 5 HOH A 19 619 60 HOH HOH . H 5 HOH A 20 620 112 HOH HOH . H 5 HOH A 21 621 54 HOH HOH . H 5 HOH A 22 622 85 HOH HOH . H 5 HOH A 23 623 196 HOH HOH . H 5 HOH A 24 624 47 HOH HOH . H 5 HOH A 25 625 184 HOH HOH . H 5 HOH A 26 626 191 HOH HOH . H 5 HOH A 27 627 198 HOH HOH . H 5 HOH A 28 628 19 HOH HOH . H 5 HOH A 29 629 136 HOH HOH . H 5 HOH A 30 630 165 HOH HOH . H 5 HOH A 31 631 125 HOH HOH . H 5 HOH A 32 632 64 HOH HOH . H 5 HOH A 33 633 189 HOH HOH . H 5 HOH A 34 634 26 HOH HOH . H 5 HOH A 35 635 49 HOH HOH . H 5 HOH A 36 636 11 HOH HOH . H 5 HOH A 37 637 37 HOH HOH . H 5 HOH A 38 638 180 HOH HOH . H 5 HOH A 39 639 86 HOH HOH . H 5 HOH A 40 640 154 HOH HOH . H 5 HOH A 41 641 9 HOH HOH . H 5 HOH A 42 642 8 HOH HOH . H 5 HOH A 43 643 13 HOH HOH . H 5 HOH A 44 644 28 HOH HOH . H 5 HOH A 45 645 3 HOH HOH . H 5 HOH A 46 646 195 HOH HOH . H 5 HOH A 47 647 163 HOH HOH . H 5 HOH A 48 648 91 HOH HOH . H 5 HOH A 49 649 89 HOH HOH . H 5 HOH A 50 650 135 HOH HOH . H 5 HOH A 51 651 187 HOH HOH . H 5 HOH A 52 652 186 HOH HOH . H 5 HOH A 53 653 94 HOH HOH . H 5 HOH A 54 654 36 HOH HOH . H 5 HOH A 55 655 70 HOH HOH . H 5 HOH A 56 656 68 HOH HOH . H 5 HOH A 57 657 90 HOH HOH . H 5 HOH A 58 658 161 HOH HOH . H 5 HOH A 59 659 134 HOH HOH . H 5 HOH A 60 660 62 HOH HOH . H 5 HOH A 61 661 121 HOH HOH . H 5 HOH A 62 662 41 HOH HOH . H 5 HOH A 63 663 115 HOH HOH . H 5 HOH A 64 664 174 HOH HOH . H 5 HOH A 65 665 59 HOH HOH . H 5 HOH A 66 666 131 HOH HOH . H 5 HOH A 67 667 48 HOH HOH . H 5 HOH A 68 668 43 HOH HOH . H 5 HOH A 69 669 102 HOH HOH . H 5 HOH A 70 670 172 HOH HOH . H 5 HOH A 71 671 14 HOH HOH . H 5 HOH A 72 672 181 HOH HOH . H 5 HOH A 73 673 162 HOH HOH . H 5 HOH A 74 674 30 HOH HOH . H 5 HOH A 75 675 156 HOH HOH . H 5 HOH A 76 676 153 HOH HOH . H 5 HOH A 77 677 188 HOH HOH . H 5 HOH A 78 678 99 HOH HOH . H 5 HOH A 79 679 177 HOH HOH . H 5 HOH A 80 680 144 HOH HOH . H 5 HOH A 81 681 168 HOH HOH . H 5 HOH A 82 682 110 HOH HOH . H 5 HOH A 83 683 182 HOH HOH . H 5 HOH A 84 684 97 HOH HOH . H 5 HOH A 85 685 87 HOH HOH . H 5 HOH A 86 686 175 HOH HOH . H 5 HOH A 87 687 185 HOH HOH . H 5 HOH A 88 688 117 HOH HOH . I 5 HOH B 1 601 29 HOH HOH . I 5 HOH B 2 602 5 HOH HOH . I 5 HOH B 3 603 199 HOH HOH . I 5 HOH B 4 604 22 HOH HOH . I 5 HOH B 5 605 152 HOH HOH . I 5 HOH B 6 606 4 HOH HOH . I 5 HOH B 7 607 203 HOH HOH . I 5 HOH B 8 608 126 HOH HOH . I 5 HOH B 9 609 17 HOH HOH . I 5 HOH B 10 610 52 HOH HOH . I 5 HOH B 11 611 108 HOH HOH . I 5 HOH B 12 612 92 HOH HOH . I 5 HOH B 13 613 33 HOH HOH . I 5 HOH B 14 614 61 HOH HOH . I 5 HOH B 15 615 130 HOH HOH . I 5 HOH B 16 616 109 HOH HOH . I 5 HOH B 17 617 83 HOH HOH . I 5 HOH B 18 618 111 HOH HOH . I 5 HOH B 19 619 76 HOH HOH . I 5 HOH B 20 620 32 HOH HOH . I 5 HOH B 21 621 129 HOH HOH . I 5 HOH B 22 622 53 HOH HOH . I 5 HOH B 23 623 7 HOH HOH . I 5 HOH B 24 624 24 HOH HOH . I 5 HOH B 25 625 25 HOH HOH . I 5 HOH B 26 626 150 HOH HOH . I 5 HOH B 27 627 98 HOH HOH . I 5 HOH B 28 628 44 HOH HOH . I 5 HOH B 29 629 114 HOH HOH . I 5 HOH B 30 630 82 HOH HOH . I 5 HOH B 31 631 127 HOH HOH . I 5 HOH B 32 632 194 HOH HOH . I 5 HOH B 33 633 167 HOH HOH . I 5 HOH B 34 634 158 HOH HOH . I 5 HOH B 35 635 202 HOH HOH . I 5 HOH B 36 636 164 HOH HOH . I 5 HOH B 37 637 73 HOH HOH . I 5 HOH B 38 638 104 HOH HOH . I 5 HOH B 39 639 171 HOH HOH . I 5 HOH B 40 640 79 HOH HOH . I 5 HOH B 41 641 23 HOH HOH . I 5 HOH B 42 642 100 HOH HOH . I 5 HOH B 43 643 18 HOH HOH . I 5 HOH B 44 644 2 HOH HOH . I 5 HOH B 45 645 20 HOH HOH . I 5 HOH B 46 646 160 HOH HOH . I 5 HOH B 47 647 42 HOH HOH . I 5 HOH B 48 648 31 HOH HOH . I 5 HOH B 49 649 95 HOH HOH . I 5 HOH B 50 650 57 HOH HOH . I 5 HOH B 51 651 183 HOH HOH . I 5 HOH B 52 652 1 HOH HOH . I 5 HOH B 53 653 80 HOH HOH . I 5 HOH B 54 654 103 HOH HOH . I 5 HOH B 55 655 142 HOH HOH . I 5 HOH B 56 656 15 HOH HOH . I 5 HOH B 57 657 141 HOH HOH . I 5 HOH B 58 658 190 HOH HOH . I 5 HOH B 59 659 35 HOH HOH . I 5 HOH B 60 660 170 HOH HOH . I 5 HOH B 61 661 116 HOH HOH . I 5 HOH B 62 662 124 HOH HOH . I 5 HOH B 63 663 139 HOH HOH . I 5 HOH B 64 664 147 HOH HOH . I 5 HOH B 65 665 10 HOH HOH . I 5 HOH B 66 666 93 HOH HOH . I 5 HOH B 67 667 78 HOH HOH . I 5 HOH B 68 668 119 HOH HOH . I 5 HOH B 69 669 72 HOH HOH . I 5 HOH B 70 670 12 HOH HOH . I 5 HOH B 71 671 84 HOH HOH . I 5 HOH B 72 672 40 HOH HOH . I 5 HOH B 73 673 123 HOH HOH . I 5 HOH B 74 674 69 HOH HOH . I 5 HOH B 75 675 81 HOH HOH . I 5 HOH B 76 676 46 HOH HOH . I 5 HOH B 77 677 137 HOH HOH . I 5 HOH B 78 678 145 HOH HOH . I 5 HOH B 79 679 71 HOH HOH . I 5 HOH B 80 680 50 HOH HOH . I 5 HOH B 81 681 179 HOH HOH . I 5 HOH B 82 682 58 HOH HOH . I 5 HOH B 83 683 51 HOH HOH . I 5 HOH B 84 684 27 HOH HOH . I 5 HOH B 85 685 140 HOH HOH . I 5 HOH B 86 686 63 HOH HOH . I 5 HOH B 87 687 67 HOH HOH . I 5 HOH B 88 688 149 HOH HOH . I 5 HOH B 89 689 66 HOH HOH . I 5 HOH B 90 690 155 HOH HOH . I 5 HOH B 91 691 148 HOH HOH . I 5 HOH B 92 692 34 HOH HOH . I 5 HOH B 93 693 77 HOH HOH . I 5 HOH B 94 694 96 HOH HOH . I 5 HOH B 95 695 159 HOH HOH . I 5 HOH B 96 696 169 HOH HOH . I 5 HOH B 97 697 201 HOH HOH . I 5 HOH B 98 698 101 HOH HOH . I 5 HOH B 99 699 113 HOH HOH . I 5 HOH B 100 700 38 HOH HOH . I 5 HOH B 101 701 157 HOH HOH . I 5 HOH B 102 702 192 HOH HOH . I 5 HOH B 103 703 120 HOH HOH . I 5 HOH B 104 704 122 HOH HOH . I 5 HOH B 105 705 88 HOH HOH . I 5 HOH B 106 706 200 HOH HOH . I 5 HOH B 107 707 197 HOH HOH . I 5 HOH B 108 708 143 HOH HOH . I 5 HOH B 109 709 176 HOH HOH . I 5 HOH B 110 710 106 HOH HOH . I 5 HOH B 111 711 138 HOH HOH . I 5 HOH B 112 712 75 HOH HOH . I 5 HOH B 113 713 107 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 N N9 ADE . . . C 2 15.718 31.542 -6.314 1 73.03 ? N9 ADE 501 A 1 HETATM 2 C C8 ADE . . . C 2 16.33 31.596 -7.484 1 73.88 ? C8 ADE 501 A 1 HETATM 3 N N7 ADE . . . C 2 16.135 30.508 -8.253 1 76.2 ? N7 ADE 501 A 1 HETATM 4 C C5 ADE . . . C 2 15.313 29.652 -7.544 1 75.41 ? C5 ADE 501 A 1 HETATM 5 C C6 ADE . . . C 2 14.704 28.374 -7.741 1 65.99 ? C6 ADE 501 A 1 HETATM 6 N N6 ADE . . . C 2 14.852 27.619 -8.839 1 60.47 ? N6 ADE 501 A 1 HETATM 7 N N1 ADE . . . C 2 13.925 27.896 -6.751 1 67.12 ? N1 ADE 501 A 1 HETATM 8 C C2 ADE . . . C 2 13.777 28.634 -5.638 1 73.19 ? C2 ADE 501 A 1 HETATM 9 N N3 ADE . . . C 2 14.293 29.824 -5.345 1 82.95 ? N3 ADE 501 A 1 HETATM 10 C C4 ADE . . . C 2 15.07 30.325 -6.335 1 79.95 ? C4 ADE 501 A 1 # _model_server_stats.io_time_ms 9 _model_server_stats.parse_time_ms 19 _model_server_stats.create_model_time_ms 6 _model_server_stats.query_time_ms 230 _model_server_stats.encode_time_ms 2 _model_server_stats.element_count 10 #