data_8YZ8 # _model_server_result.job_id '_kio_J-_pLrFsk0N4brNOg' _model_server_result.datetime_utc '2024-11-20 16:24:11' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 8yz8 # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"D","auth_seq_id":502}' # _entry.id 8YZ8 # _exptl.entry_id 8YZ8 _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 135.127 _entity.id 3 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description ADENINE _entity.pdbx_number_of_molecules 2 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 8YZ8 _cell.length_a 145.406 _cell.length_b 145.406 _cell.length_c 129.178 _cell.Z_PDB 16 _cell.pdbx_unique_axis ? # _symmetry.entry_id 8YZ8 _symmetry.cell_setting ? _symmetry.Int_Tables_number 80 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'I 41' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 3 D N N ? 3 F N N # _chem_comp.formula 'C5 H5 N5' _chem_comp.formula_weight 135.127 _chem_comp.id ADE _chem_comp.mon_nstd_flag . _chem_comp.name ADENINE _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag N9 C8 ADE sing 1 n y N9 C4 ADE sing 2 n y N9 HN9 ADE sing 3 n n C8 N7 ADE doub 4 n y C8 H8 ADE sing 5 n n N7 C5 ADE sing 6 n y C5 C6 ADE sing 7 n y C5 C4 ADE doub 8 n y C6 N6 ADE sing 9 n n C6 N1 ADE doub 10 n y N6 HN61 ADE sing 11 n n N6 HN62 ADE sing 12 n n N1 C2 ADE sing 13 n y C2 N3 ADE doub 14 n y C2 H2 ADE sing 15 n n N3 C4 ADE sing 16 n y # _atom_sites.entry_id 8YZ8 _atom_sites.fract_transf_matrix[1][1] 0.006877 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.006877 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.007741 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 2 HEM A 1 501 468 HEM DRG . D 3 ADE A 1 502 470 ADE ADF . E 2 HEM B 1 501 468 HEM DRG . F 3 ADE B 1 502 470 ADE ADF . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 N N9 ADE . . . D 3 16.405 5.851 -4.497 1 58.89 ? N9 ADE 502 A 1 HETATM 2 C C8 ADE . . . D 3 16.921 4.986 -5.353 1 59.73 ? C8 ADE 502 A 1 HETATM 3 N N7 ADE . . . D 3 17.811 5.522 -6.202 1 71.12 ? N7 ADE 502 A 1 HETATM 4 C C5 ADE . . . D 3 17.894 6.864 -5.889 1 71.11 ? C5 ADE 502 A 1 HETATM 5 C C6 ADE . . . D 3 18.611 7.986 -6.357 1 72.29 ? C6 ADE 502 A 1 HETATM 6 N N6 ADE . . . D 3 19.491 7.924 -7.367 1 67.69 ? N6 ADE 502 A 1 HETATM 7 N N1 ADE . . . D 3 18.395 9.17 -5.742 1 67.01 ? N1 ADE 502 A 1 HETATM 8 C C2 ADE . . . D 3 17.513 9.217 -4.727 1 62.41 ? C2 ADE 502 A 1 HETATM 9 N N3 ADE . . . D 3 16.785 8.237 -4.207 1 61.11 ? N3 ADE 502 A 1 HETATM 10 C C4 ADE . . . D 3 17.005 7.047 -4.818 1 64.71 ? C4 ADE 502 A 1 # _model_server_stats.io_time_ms 10 _model_server_stats.parse_time_ms 26 _model_server_stats.create_model_time_ms 7 _model_server_stats.query_time_ms 299 _model_server_stats.encode_time_ms 4 _model_server_stats.element_count 10 #