data_8Z1H
#
_model_server_result.job_id            ubQKnAuGyr_4qyIQiTqG3w 
_model_server_result.datetime_utc      '2025-07-21 23:26:24' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          8z1h 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"C","auth_seq_id":301}' 
#
_entry.id    8Z1H 
#
_exptl.entry_id    8Z1H 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              474.55 
_entity.id                          2 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            N-[(2S)-1-({(2S,3S)-3,4-dihydroxy-1-[(3S)-2-oxopyrrolidin-3-yl]butan-2-yl}amino)-4-methyl-1-oxopentan-2-yl]-4-methoxy-1H-indole-2-carboxamide 
_entity.pdbx_number_of_molecules    2 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         91.232 
_cell.angle_beta          102.459 
_cell.angle_gamma         108.662 
_cell.entry_id            8Z1H 
_cell.length_a            55.035 
_cell.length_b            60.931 
_cell.length_c            68.217 
_cell.Z_PDB               2 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 8Z1H 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        1 
_symmetry.space_group_name_Hall    'P 1' 
_symmetry.space_group_name_H-M     'P 1' 
#
_pdbx_struct_assembly.method_details        PISA 
_pdbx_struct_assembly.oligomeric_details    dimeric 
_pdbx_struct_assembly.oligomeric_count      2 
_pdbx_struct_assembly.details               author_and_software_defined_assembly 
_pdbx_struct_assembly.id                    1 
#
_pdbx_struct_assembly_gen.asym_id_list       A,B,C,D,E,F 
_pdbx_struct_assembly_gen.assembly_id        1 
_pdbx_struct_assembly_gen.oper_expression    1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    x,y,z 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
loop_
_struct_asym.details
_struct_asym.entity_id
_struct_asym.id
_struct_asym.pdbx_modified
_struct_asym.pdbx_blank_PDB_chainid_flag
? 2 C N N 
? 2 D N N 
#
loop_
_struct_conn.conn_type_id
_struct_conn.details
_struct_conn.id
_struct_conn.ptnr1_label_asym_id
_struct_conn.ptnr1_label_atom_id
_struct_conn.ptnr1_label_comp_id
_struct_conn.ptnr1_label_seq_id
_struct_conn.ptnr1_auth_asym_id
_struct_conn.ptnr1_auth_comp_id
_struct_conn.ptnr1_auth_seq_id
_struct_conn.ptnr1_symmetry
_struct_conn.ptnr2_label_asym_id
_struct_conn.ptnr2_label_atom_id
_struct_conn.ptnr2_label_comp_id
_struct_conn.ptnr2_label_seq_id
_struct_conn.ptnr2_auth_asym_id
_struct_conn.ptnr2_auth_comp_id
_struct_conn.ptnr2_auth_seq_id
_struct_conn.ptnr2_symmetry
_struct_conn.pdbx_ptnr1_PDB_ins_code
_struct_conn.pdbx_ptnr1_label_alt_id
_struct_conn.pdbx_ptnr1_standard_comp_id
_struct_conn.pdbx_ptnr2_PDB_ins_code
_struct_conn.pdbx_ptnr2_label_alt_id
_struct_conn.pdbx_ptnr3_PDB_ins_code
_struct_conn.pdbx_ptnr3_label_alt_id
_struct_conn.pdbx_ptnr3_label_asym_id
_struct_conn.pdbx_ptnr3_label_atom_id
_struct_conn.pdbx_ptnr3_label_comp_id
_struct_conn.pdbx_ptnr3_label_seq_id
_struct_conn.pdbx_PDB_id
_struct_conn.pdbx_dist_value
_struct_conn.pdbx_value_order
covale ? covale1 A SG CYS 142 A CYS 145 1_555 C C34 V2M . A V2M 301 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.908 ? 
covale ? covale2 B SG CYS 142 B CYS 145 1_555 D C34 V2M . B V2M 301 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.981 ? 
#
_chem_comp.formula           'C24 H34 N4 O6' 
_chem_comp.formula_weight    474.55 
_chem_comp.id                V2M 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              N-[(2S)-1-({(2S,3S)-3,4-dihydroxy-1-[(3S)-2-oxopyrrolidin-3-yl]butan-2-yl}amino)-4-methyl-1-oxopentan-2-yl]-4-methoxy-1H-indole-2-carboxamide 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     'N-[(2S)-1-({(2S)-4-hydroxy-3-oxo-1-[(3S)-2-oxopyrrolidin-3-yl]butan-2-yl}amino)-4-methyl-1-oxopentan-2-yl]-4-methoxy-1H-indole-2-carboxamide, bound form' 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
O37 C36 V2M sing 358 n n 
C36 C34 V2M sing 359 n n 
O35 C34 V2M sing 360 n n 
C20 C18 V2M sing 361 n n 
C34 C24 V2M sing 362 n n 
O22 C21 V2M doub 363 n n 
C17 C18 V2M sing 364 n n 
C17 C15 V2M sing 365 n n 
C18 C19 V2M sing 366 n n 
C24 N23 V2M sing 367 n n 
C24 C26 V2M sing 368 n n 
C21 N23 V2M sing 369 n n 
C21 C15 V2M sing 370 n n 
C1 O2 V2M sing 371 n n 
C15 N14 V2M sing 372 n n 
C29 C30 V2M sing 373 n n 
C29 C27 V2M sing 374 n n 
O2 C3 V2M sing 375 n n 
N14 C12 V2M sing 376 n n 
C26 C27 V2M sing 377 n n 
C10 C11 V2M sing 378 n y 
C10 C9 V2M doub 379 n y 
C30 N31 V2M sing 380 n n 
C27 C32 V2M sing 381 n n 
C3 C11 V2M doub 382 n y 
C3 C4 V2M sing 383 n y 
C12 C9 V2M sing 384 n n 
C12 O13 V2M doub 385 n n 
C11 C7 V2M sing 386 n y 
C9 N8 V2M sing 387 n y 
C4 C5 V2M doub 388 n y 
N31 C32 V2M sing 389 n n 
C32 O33 V2M doub 390 n n 
C7 N8 V2M sing 391 n y 
C7 C6 V2M doub 392 n y 
C5 C6 V2M sing 393 n y 
C1 H1 V2M sing 394 n n 
C1 H2 V2M sing 395 n n 
C1 H3 V2M sing 396 n n 
C4 H4 V2M sing 397 n n 
C5 H5 V2M sing 398 n n 
C6 H6 V2M sing 399 n n 
N8 H7 V2M sing 400 n n 
C10 H8 V2M sing 401 n n 
N14 H9 V2M sing 402 n n 
C15 H10 V2M sing 403 n n 
C17 H11 V2M sing 404 n n 
C17 H12 V2M sing 405 n n 
C18 H13 V2M sing 406 n n 
C19 H14 V2M sing 407 n n 
C19 H15 V2M sing 408 n n 
C19 H16 V2M sing 409 n n 
C20 H17 V2M sing 410 n n 
C20 H18 V2M sing 411 n n 
C20 H19 V2M sing 412 n n 
N23 H20 V2M sing 413 n n 
C24 H21 V2M sing 414 n n 
C26 H22 V2M sing 415 n n 
C26 H23 V2M sing 416 n n 
C27 H24 V2M sing 417 n n 
C29 H25 V2M sing 418 n n 
C29 H26 V2M sing 419 n n 
C30 H27 V2M sing 420 n n 
C30 H28 V2M sing 421 n n 
N31 H29 V2M sing 422 n n 
C34 H30 V2M sing 423 n n 
O35 H31 V2M sing 424 n n 
C36 H32 V2M sing 425 n n 
C36 H33 V2M sing 426 n n 
O37 H34 V2M sing 427 n n 
#
_atom_sites.entry_id                     8Z1H 
_atom_sites.fract_transf_matrix[1][1]    0.01817 
_atom_sites.fract_transf_matrix[1][2]    0.006137 
_atom_sites.fract_transf_matrix[1][3]    0.004637 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.017323 
_atom_sites.fract_transf_matrix[2][3]    0.001703 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.015085 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
C 2 V2M A 1 301 301 V2M V2M . 
D 2 V2M B 1 301 301 V2M V2M . 
E 3 HOH A 1 401 11 HOH HOH . 
E 3 HOH A 2 402 54 HOH HOH . 
E 3 HOH A 3 403 12 HOH HOH . 
E 3 HOH A 4 404 24 HOH HOH . 
E 3 HOH A 5 405 10 HOH HOH . 
E 3 HOH A 6 406 7 HOH HOH . 
E 3 HOH A 7 407 15 HOH HOH . 
E 3 HOH A 8 408 14 HOH HOH . 
E 3 HOH A 9 409 20 HOH HOH . 
E 3 HOH A 10 410 6 HOH HOH . 
E 3 HOH A 11 411 17 HOH HOH . 
E 3 HOH A 12 412 29 HOH HOH . 
E 3 HOH A 13 413 22 HOH HOH . 
E 3 HOH A 14 414 74 HOH HOH . 
E 3 HOH A 15 415 23 HOH HOH . 
E 3 HOH A 16 416 40 HOH HOH . 
E 3 HOH A 17 417 16 HOH HOH . 
E 3 HOH A 18 418 18 HOH HOH . 
E 3 HOH A 19 419 68 HOH HOH . 
E 3 HOH A 20 420 1 HOH HOH . 
E 3 HOH A 21 421 5 HOH HOH . 
E 3 HOH A 22 422 35 HOH HOH . 
E 3 HOH A 23 423 28 HOH HOH . 
E 3 HOH A 24 424 44 HOH HOH . 
E 3 HOH A 25 425 36 HOH HOH . 
E 3 HOH A 26 426 21 HOH HOH . 
E 3 HOH A 27 427 60 HOH HOH . 
E 3 HOH A 28 428 62 HOH HOH . 
E 3 HOH A 29 429 53 HOH HOH . 
E 3 HOH A 30 430 63 HOH HOH . 
E 3 HOH A 31 431 33 HOH HOH . 
E 3 HOH A 32 432 25 HOH HOH . 
E 3 HOH A 33 433 26 HOH HOH . 
E 3 HOH A 34 434 58 HOH HOH . 
E 3 HOH A 35 435 56 HOH HOH . 
E 3 HOH A 36 436 41 HOH HOH . 
E 3 HOH A 37 437 61 HOH HOH . 
E 3 HOH A 38 438 47 HOH HOH . 
E 3 HOH A 39 439 51 HOH HOH . 
E 3 HOH A 40 440 72 HOH HOH . 
E 3 HOH A 41 441 64 HOH HOH . 
F 3 HOH B 1 401 49 HOH HOH . 
F 3 HOH B 2 402 19 HOH HOH . 
F 3 HOH B 3 403 42 HOH HOH . 
F 3 HOH B 4 404 30 HOH HOH . 
F 3 HOH B 5 405 31 HOH HOH . 
F 3 HOH B 6 406 9 HOH HOH . 
F 3 HOH B 7 407 2 HOH HOH . 
F 3 HOH B 8 408 32 HOH HOH . 
F 3 HOH B 9 409 4 HOH HOH . 
F 3 HOH B 10 410 45 HOH HOH . 
F 3 HOH B 11 411 13 HOH HOH . 
F 3 HOH B 12 412 27 HOH HOH . 
F 3 HOH B 13 413 57 HOH HOH . 
F 3 HOH B 14 414 59 HOH HOH . 
F 3 HOH B 15 415 37 HOH HOH . 
F 3 HOH B 16 416 65 HOH HOH . 
F 3 HOH B 17 417 46 HOH HOH . 
F 3 HOH B 18 418 38 HOH HOH . 
F 3 HOH B 19 419 50 HOH HOH . 
F 3 HOH B 20 420 3 HOH HOH . 
F 3 HOH B 21 421 8 HOH HOH . 
F 3 HOH B 22 422 70 HOH HOH . 
F 3 HOH B 23 423 69 HOH HOH . 
F 3 HOH B 24 424 39 HOH HOH . 
F 3 HOH B 25 425 48 HOH HOH . 
F 3 HOH B 26 426 73 HOH HOH . 
F 3 HOH B 27 427 52 HOH HOH . 
F 3 HOH B 28 428 67 HOH HOH . 
F 3 HOH B 29 429 66 HOH HOH . 
F 3 HOH B 30 430 55 HOH HOH . 
F 3 HOH B 31 431 34 HOH HOH . 
F 3 HOH B 32 432 43 HOH HOH . 
F 3 HOH B 33 433 75 HOH HOH . 
F 3 HOH B 34 434 71 HOH HOH . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 C C1 V2M . . . C 2 66.172 -33.284 -8.956 1 34.68 ? C1 V2M 301 A 1 
HETATM 2 O O2 V2M . . . C 2 66.108 -33.811 -7.641 1 32.55 ? O2 V2M 301 A 1 
HETATM 3 C C3 V2M . . . C 2 65.231 -34.831 -7.413 1 34.2 ? C3 V2M 301 A 1 
HETATM 4 C C4 V2M . . . C 2 64.649 -35.573 -8.412 1 29.99 ? C4 V2M 301 A 1 
HETATM 5 C C5 V2M . . . C 2 63.758 -36.605 -8.098 1 33.02 ? C5 V2M 301 A 1 
HETATM 6 C C6 V2M . . . C 2 63.424 -36.913 -6.809 1 32.38 ? C6 V2M 301 A 1 
HETATM 7 C C7 V2M . . . C 2 64.008 -36.161 -5.797 1 32.25 ? C7 V2M 301 A 1 
HETATM 8 N N8 V2M . . . C 2 63.863 -36.232 -4.441 1 30.64 ? N8 V2M 301 A 1 
HETATM 9 C C9 V2M . . . C 2 64.647 -35.27 -3.853 1 29.17 ? C9 V2M 301 A 1 
HETATM 10 C C10 V2M . . . C 2 65.304 -34.569 -4.83 1 29.43 ? C10 V2M 301 A 1 
HETATM 11 C C11 V2M . . . C 2 64.914 -35.119 -6.078 1 30.74 ? C11 V2M 301 A 1 
HETATM 12 C C12 V2M . . . C 2 64.646 -35.166 -2.393 1 29.61 ? C12 V2M 301 A 1 
HETATM 13 O O13 V2M . . . C 2 63.963 -35.917 -1.703 1 29.52 ? O13 V2M 301 A 1 
HETATM 14 N N14 V2M . . . C 2 65.434 -34.22 -1.874 1 28.63 ? N14 V2M 301 A 1 
HETATM 15 C C15 V2M . . . C 2 65.424 -33.921 -0.453 1 26.13 ? C15 V2M 301 A 1 
HETATM 16 C C17 V2M . . . C 2 66.522 -32.902 -0.154 1 26.21 ? C17 V2M 301 A 1 
HETATM 17 C C18 V2M . . . C 2 67.941 -33.368 -0.467 1 28 ? C18 V2M 301 A 1 
HETATM 18 C C19 V2M . . . C 2 68.911 -32.201 -0.464 1 26.41 ? C19 V2M 301 A 1 
HETATM 19 C C20 V2M . . . C 2 68.386 -34.44 0.512 1 27.31 ? C20 V2M 301 A 1 
HETATM 20 C C21 V2M . . . C 2 64.07 -33.368 -0.005 1 30.34 ? C21 V2M 301 A 1 
HETATM 21 O O22 V2M . . . C 2 63.462 -32.578 -0.714 1 29.44 ? O22 V2M 301 A 1 
HETATM 22 N N23 V2M . . . C 2 63.622 -33.738 1.196 1 25.16 ? N23 V2M 301 A 1 
HETATM 23 C C24 V2M . . . C 2 62.4 -33.496 1.864 1 28.82 ? C24 V2M 301 A 1 
HETATM 24 C C26 V2M . . . C 2 61.479 -34.521 2.068 1 27.26 ? C26 V2M 301 A 1 
HETATM 25 C C27 V2M . . . C 2 60.838 -35.075 0.807 1 31.06 ? C27 V2M 301 A 1 
HETATM 26 C C29 V2M . . . C 2 59.974 -34.033 0.123 1 27.41 ? C29 V2M 301 A 1 
HETATM 27 C C30 V2M . . . C 2 58.832 -34.817 -0.485 1 29.1 ? C30 V2M 301 A 1 
HETATM 28 N N31 V2M . . . C 2 58.784 -36.013 0.341 1 30.6 ? N31 V2M 301 A 1 
HETATM 29 C C32 V2M . . . C 2 59.873 -36.217 1.048 1 29.31 ? C32 V2M 301 A 1 
HETATM 30 O O33 V2M . . . C 2 60.1 -37.195 1.724 1 24.96 ? O33 V2M 301 A 1 
HETATM 31 C C34 V2M . . . C 2 62.893 -32.845 3.333 1 30.97 ? C34 V2M 301 A 1 
HETATM 32 O O35 V2M . . . C 2 61.733 -32.324 3.742 1 27.48 ? O35 V2M 301 A 1 
HETATM 33 C C36 V2M . . . C 2 63.774 -31.947 2.945 1 28.41 ? C36 V2M 301 A 1 
HETATM 34 O O37 V2M . . . C 2 63.777 -30.459 3.479 1 28.81 ? O37 V2M 301 A 1 
#
_model_server_stats.io_time_ms              68 
_model_server_stats.parse_time_ms           13 
_model_server_stats.create_model_time_ms    7 
_model_server_stats.query_time_ms           299 
_model_server_stats.encode_time_ms          3 
_model_server_stats.element_count           34 
#