data_8Z2G # _model_server_result.job_id SCjn9sTtw9vOhnv1Pq8H9w _model_server_result.datetime_utc '2024-12-01 06:45:07' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 8z2g # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"F","auth_seq_id":401}' # _entry.id 8Z2G # _exptl.entry_id 8Z2G _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 92.094 _entity.id 5 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description GLYCEROL _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 120 _cell.entry_id 8Z2G _cell.length_a 83.025 _cell.length_b 83.025 _cell.length_c 64.501 _cell.Z_PDB 6 _cell.pdbx_unique_axis ? # _symmetry.entry_id 8Z2G _symmetry.cell_setting ? _symmetry.Int_Tables_number 143 _symmetry.space_group_name_Hall 'P 3' _symmetry.space_group_name_H-M 'P 3' # loop_ _pdbx_struct_assembly.method_details _pdbx_struct_assembly.oligomeric_details _pdbx_struct_assembly.oligomeric_count _pdbx_struct_assembly.details _pdbx_struct_assembly.id ? monomeric 1 author_defined_assembly 1 ? monomeric 1 author_defined_assembly 2 # loop_ _pdbx_struct_assembly_gen.asym_id_list _pdbx_struct_assembly_gen.assembly_id _pdbx_struct_assembly_gen.oper_expression A,C,D,E,H 1 1 B,F,G,I 2 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 5 _struct_asym.id F _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order disulf ? disulf1 A SG CYS 206 A CYS 250 1_555 A SG CYS 252 A CYS 296 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.03 ? disulf ? disulf2 A SG CYS 243 A CYS 287 1_555 A SG CYS 258 A CYS 302 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.03 ? disulf ? disulf3 B SG CYS 206 B CYS 250 1_555 B SG CYS 252 B CYS 296 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.03 ? disulf ? disulf4 B SG CYS 243 B CYS 287 1_555 B SG CYS 258 B CYS 302 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.031 ? # _chem_comp.formula 'C3 H8 O3' _chem_comp.formula_weight 92.094 _chem_comp.id GOL _chem_comp.mon_nstd_flag . _chem_comp.name GLYCEROL _chem_comp.type non-polymer _chem_comp.pdbx_synonyms GLYCERIN;PROPANE-1,2,3-TRIOL # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C1 O1 GOL sing 186 n n C1 C2 GOL sing 187 n n C1 H11 GOL sing 188 n n C1 H12 GOL sing 189 n n O1 HO1 GOL sing 190 n n C2 O2 GOL sing 191 n n C2 C3 GOL sing 192 n n C2 H2 GOL sing 193 n n O2 HO2 GOL sing 194 n n C3 O3 GOL sing 195 n n C3 H31 GOL sing 196 n n C3 H32 GOL sing 197 n n O3 HO3 GOL sing 198 n n # _atom_sites.entry_id 8Z2G _atom_sites.fract_transf_matrix[1][1] 0.012045 _atom_sites.fract_transf_matrix[1][2] 0.006954 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.013908 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.015504 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 2 NH4 A 1 401 402 NH4 NH4 . D 3 BTB A 1 402 403 BTB BTB . E 4 C9C A 1 403 1 C9C J1K . F 5 GOL B 1 401 401 GOL GOL . G 4 C9C B 1 402 2 C9C J1K . H 6 HOH A 1 501 207 HOH HOH . H 6 HOH A 2 502 45 HOH HOH . H 6 HOH A 3 503 5 HOH HOH . H 6 HOH A 4 504 77 HOH HOH . H 6 HOH A 5 505 3 HOH HOH . H 6 HOH A 6 506 40 HOH HOH . H 6 HOH A 7 507 69 HOH HOH . H 6 HOH A 8 508 185 HOH HOH . H 6 HOH A 9 509 302 HOH HOH . H 6 HOH A 10 510 97 HOH HOH . H 6 HOH A 11 511 173 HOH HOH . H 6 HOH A 12 512 262 HOH HOH . H 6 HOH A 13 513 273 HOH HOH . H 6 HOH A 14 514 7 HOH HOH . H 6 HOH A 15 515 178 HOH HOH . H 6 HOH A 16 516 325 HOH HOH . H 6 HOH A 17 517 281 HOH HOH . H 6 HOH A 18 518 37 HOH HOH . H 6 HOH A 19 519 82 HOH HOH . H 6 HOH A 20 520 10 HOH HOH . H 6 HOH A 21 521 179 HOH HOH . H 6 HOH A 22 522 205 HOH HOH . H 6 HOH A 23 523 20 HOH HOH . H 6 HOH A 24 524 6 HOH HOH . H 6 HOH A 25 525 110 HOH HOH . H 6 HOH A 26 526 199 HOH HOH . H 6 HOH A 27 527 46 HOH HOH . H 6 HOH A 28 528 160 HOH HOH . H 6 HOH A 29 529 269 HOH HOH . H 6 HOH A 30 530 72 HOH HOH . H 6 HOH A 31 531 125 HOH HOH . H 6 HOH A 32 532 31 HOH HOH . H 6 HOH A 33 533 33 HOH HOH . H 6 HOH A 34 534 301 HOH HOH . H 6 HOH A 35 535 156 HOH HOH . H 6 HOH A 36 536 76 HOH HOH . H 6 HOH A 37 537 25 HOH HOH . H 6 HOH A 38 538 93 HOH HOH . H 6 HOH A 39 539 221 HOH HOH . H 6 HOH A 40 540 182 HOH HOH . H 6 HOH A 41 541 232 HOH HOH . H 6 HOH A 42 542 102 HOH HOH . H 6 HOH A 43 543 222 HOH HOH . H 6 HOH A 44 544 121 HOH HOH . H 6 HOH A 45 545 26 HOH HOH . H 6 HOH A 46 546 324 HOH HOH . H 6 HOH A 47 547 96 HOH HOH . H 6 HOH A 48 548 55 HOH HOH . H 6 HOH A 49 549 86 HOH HOH . H 6 HOH A 50 550 57 HOH HOH . H 6 HOH A 51 551 29 HOH HOH . H 6 HOH A 52 552 66 HOH HOH . H 6 HOH A 53 553 2 HOH HOH . H 6 HOH A 54 554 181 HOH HOH . H 6 HOH A 55 555 118 HOH HOH . H 6 HOH A 56 556 95 HOH HOH . H 6 HOH A 57 557 49 HOH HOH . H 6 HOH A 58 558 99 HOH HOH . H 6 HOH A 59 559 13 HOH HOH . H 6 HOH A 60 560 177 HOH HOH . H 6 HOH A 61 561 52 HOH HOH . H 6 HOH A 62 562 175 HOH HOH . H 6 HOH A 63 563 24 HOH HOH . H 6 HOH A 64 564 41 HOH HOH . H 6 HOH A 65 565 190 HOH HOH . H 6 HOH A 66 566 297 HOH HOH . H 6 HOH A 67 567 135 HOH HOH . H 6 HOH A 68 568 189 HOH HOH . H 6 HOH A 69 569 18 HOH HOH . H 6 HOH A 70 570 345 HOH HOH . H 6 HOH A 71 571 165 HOH HOH . H 6 HOH A 72 572 141 HOH HOH . H 6 HOH A 73 573 87 HOH HOH . H 6 HOH A 74 574 28 HOH HOH . H 6 HOH A 75 575 144 HOH HOH . H 6 HOH A 76 576 11 HOH HOH . H 6 HOH A 77 577 234 HOH HOH . H 6 HOH A 78 578 36 HOH HOH . H 6 HOH A 79 579 315 HOH HOH . H 6 HOH A 80 580 150 HOH HOH . H 6 HOH A 81 581 30 HOH HOH . H 6 HOH A 82 582 314 HOH HOH . H 6 HOH A 83 583 263 HOH HOH . H 6 HOH A 84 584 139 HOH HOH . H 6 HOH A 85 585 79 HOH HOH . H 6 HOH A 86 586 149 HOH HOH . H 6 HOH A 87 587 169 HOH HOH . H 6 HOH A 88 588 12 HOH HOH . H 6 HOH A 89 589 151 HOH HOH . H 6 HOH A 90 590 211 HOH HOH . H 6 HOH A 91 591 94 HOH HOH . H 6 HOH A 92 592 71 HOH HOH . H 6 HOH A 93 593 60 HOH HOH . H 6 HOH A 94 594 38 HOH HOH . H 6 HOH A 95 595 341 HOH HOH . H 6 HOH A 96 596 51 HOH HOH . H 6 HOH A 97 597 286 HOH HOH . H 6 HOH A 98 598 68 HOH HOH . H 6 HOH A 99 599 111 HOH HOH . H 6 HOH A 100 600 114 HOH HOH . H 6 HOH A 101 601 240 HOH HOH . H 6 HOH A 102 602 136 HOH HOH . H 6 HOH A 103 603 294 HOH HOH . H 6 HOH A 104 604 14 HOH HOH . H 6 HOH A 105 605 83 HOH HOH . H 6 HOH A 106 606 176 HOH HOH . H 6 HOH A 107 607 220 HOH HOH . H 6 HOH A 108 608 17 HOH HOH . H 6 HOH A 109 609 253 HOH HOH . H 6 HOH A 110 610 245 HOH HOH . H 6 HOH A 111 611 132 HOH HOH . H 6 HOH A 112 612 74 HOH HOH . H 6 HOH A 113 613 73 HOH HOH . H 6 HOH A 114 614 155 HOH HOH . H 6 HOH A 115 615 78 HOH HOH . H 6 HOH A 116 616 147 HOH HOH . H 6 HOH A 117 617 163 HOH HOH . H 6 HOH A 118 618 292 HOH HOH . H 6 HOH A 119 619 334 HOH HOH . H 6 HOH A 120 620 159 HOH HOH . H 6 HOH A 121 621 231 HOH HOH . H 6 HOH A 122 622 187 HOH HOH . H 6 HOH A 123 623 321 HOH HOH . H 6 HOH A 124 624 180 HOH HOH . H 6 HOH A 125 625 117 HOH HOH . H 6 HOH A 126 626 154 HOH HOH . H 6 HOH A 127 627 126 HOH HOH . H 6 HOH A 128 628 89 HOH HOH . H 6 HOH A 129 629 339 HOH HOH . H 6 HOH A 130 630 213 HOH HOH . H 6 HOH A 131 631 106 HOH HOH . H 6 HOH A 132 632 103 HOH HOH . H 6 HOH A 133 633 104 HOH HOH . H 6 HOH A 134 634 247 HOH HOH . H 6 HOH A 135 635 134 HOH HOH . H 6 HOH A 136 636 109 HOH HOH . H 6 HOH A 137 637 335 HOH HOH . H 6 HOH A 138 638 43 HOH HOH . H 6 HOH A 139 639 293 HOH HOH . H 6 HOH A 140 640 59 HOH HOH . H 6 HOH A 141 641 171 HOH HOH . H 6 HOH A 142 642 167 HOH HOH . H 6 HOH A 143 643 203 HOH HOH . H 6 HOH A 144 644 306 HOH HOH . H 6 HOH A 145 645 168 HOH HOH . H 6 HOH A 146 646 170 HOH HOH . H 6 HOH A 147 647 188 HOH HOH . H 6 HOH A 148 648 295 HOH HOH . H 6 HOH A 149 649 107 HOH HOH . I 6 HOH B 1 501 214 HOH HOH . I 6 HOH B 2 502 340 HOH HOH . I 6 HOH B 3 503 239 HOH HOH . I 6 HOH B 4 504 258 HOH HOH . I 6 HOH B 5 505 323 HOH HOH . I 6 HOH B 6 506 196 HOH HOH . I 6 HOH B 7 507 193 HOH HOH . I 6 HOH B 8 508 210 HOH HOH . I 6 HOH B 9 509 131 HOH HOH . I 6 HOH B 10 510 296 HOH HOH . I 6 HOH B 11 511 228 HOH HOH . I 6 HOH B 12 512 34 HOH HOH . I 6 HOH B 13 513 35 HOH HOH . I 6 HOH B 14 514 174 HOH HOH . I 6 HOH B 15 515 91 HOH HOH . I 6 HOH B 16 516 122 HOH HOH . I 6 HOH B 17 517 62 HOH HOH . I 6 HOH B 18 518 75 HOH HOH . I 6 HOH B 19 519 21 HOH HOH . I 6 HOH B 20 520 270 HOH HOH . I 6 HOH B 21 521 223 HOH HOH . I 6 HOH B 22 522 280 HOH HOH . I 6 HOH B 23 523 217 HOH HOH . I 6 HOH B 24 524 227 HOH HOH . I 6 HOH B 25 525 225 HOH HOH . I 6 HOH B 26 526 4 HOH HOH . I 6 HOH B 27 527 256 HOH HOH . I 6 HOH B 28 528 202 HOH HOH . I 6 HOH B 29 529 53 HOH HOH . I 6 HOH B 30 530 9 HOH HOH . I 6 HOH B 31 531 112 HOH HOH . I 6 HOH B 32 532 58 HOH HOH . I 6 HOH B 33 533 195 HOH HOH . I 6 HOH B 34 534 92 HOH HOH . I 6 HOH B 35 535 115 HOH HOH . I 6 HOH B 36 536 332 HOH HOH . I 6 HOH B 37 537 140 HOH HOH . I 6 HOH B 38 538 344 HOH HOH . I 6 HOH B 39 539 209 HOH HOH . I 6 HOH B 40 540 194 HOH HOH . I 6 HOH B 41 541 200 HOH HOH . I 6 HOH B 42 542 238 HOH HOH . I 6 HOH B 43 543 50 HOH HOH . I 6 HOH B 44 544 192 HOH HOH . I 6 HOH B 45 545 208 HOH HOH . I 6 HOH B 46 546 39 HOH HOH . I 6 HOH B 47 547 42 HOH HOH . I 6 HOH B 48 548 265 HOH HOH . I 6 HOH B 49 549 123 HOH HOH . I 6 HOH B 50 550 19 HOH HOH . I 6 HOH B 51 551 148 HOH HOH . I 6 HOH B 52 552 16 HOH HOH . I 6 HOH B 53 553 268 HOH HOH . I 6 HOH B 54 554 138 HOH HOH . I 6 HOH B 55 555 251 HOH HOH . I 6 HOH B 56 556 284 HOH HOH . I 6 HOH B 57 557 1 HOH HOH . I 6 HOH B 58 558 44 HOH HOH . I 6 HOH B 59 559 48 HOH HOH . I 6 HOH B 60 560 127 HOH HOH . I 6 HOH B 61 561 120 HOH HOH . I 6 HOH B 62 562 8 HOH HOH . I 6 HOH B 63 563 252 HOH HOH . I 6 HOH B 64 564 313 HOH HOH . I 6 HOH B 65 565 215 HOH HOH . I 6 HOH B 66 566 22 HOH HOH . I 6 HOH B 67 567 142 HOH HOH . I 6 HOH B 68 568 275 HOH HOH . I 6 HOH B 69 569 172 HOH HOH . I 6 HOH B 70 570 304 HOH HOH . I 6 HOH B 71 571 84 HOH HOH . I 6 HOH B 72 572 70 HOH HOH . I 6 HOH B 73 573 54 HOH HOH . I 6 HOH B 74 574 67 HOH HOH . I 6 HOH B 75 575 342 HOH HOH . I 6 HOH B 76 576 162 HOH HOH . I 6 HOH B 77 577 145 HOH HOH . I 6 HOH B 78 578 100 HOH HOH . I 6 HOH B 79 579 27 HOH HOH . I 6 HOH B 80 580 56 HOH HOH . I 6 HOH B 81 581 216 HOH HOH . I 6 HOH B 82 582 319 HOH HOH . I 6 HOH B 83 583 32 HOH HOH . I 6 HOH B 84 584 242 HOH HOH . I 6 HOH B 85 585 274 HOH HOH . I 6 HOH B 86 586 243 HOH HOH . I 6 HOH B 87 587 248 HOH HOH . I 6 HOH B 88 588 108 HOH HOH . I 6 HOH B 89 589 250 HOH HOH . I 6 HOH B 90 590 327 HOH HOH . I 6 HOH B 91 591 310 HOH HOH . I 6 HOH B 92 592 23 HOH HOH . I 6 HOH B 93 593 15 HOH HOH . I 6 HOH B 94 594 316 HOH HOH . I 6 HOH B 95 595 161 HOH HOH . I 6 HOH B 96 596 337 HOH HOH . I 6 HOH B 97 597 204 HOH HOH . I 6 HOH B 98 598 197 HOH HOH . I 6 HOH B 99 599 101 HOH HOH . I 6 HOH B 100 600 80 HOH HOH . I 6 HOH B 101 601 299 HOH HOH . I 6 HOH B 102 602 198 HOH HOH . I 6 HOH B 103 603 98 HOH HOH . I 6 HOH B 104 604 287 HOH HOH . I 6 HOH B 105 605 85 HOH HOH . I 6 HOH B 106 606 312 HOH HOH . I 6 HOH B 107 607 90 HOH HOH . I 6 HOH B 108 608 219 HOH HOH . I 6 HOH B 109 609 267 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 GOL . . . F 5 69.185 49.221 -21.826 1 39.87 ? C1 GOL 401 B 1 HETATM 2 O O1 GOL . . . F 5 70.407 49.81 -22.169 1 39.93 ? O1 GOL 401 B 1 HETATM 3 C C2 GOL . . . F 5 68.304 50.333 -21.292 1 37.58 ? C2 GOL 401 B 1 HETATM 4 O O2 GOL . . . F 5 66.973 50.158 -21.628 1 39.83 ? O2 GOL 401 B 1 HETATM 5 C C3 GOL . . . F 5 68.567 50.282 -19.8 1 39.51 ? C3 GOL 401 B 1 HETATM 6 O O3 GOL . . . F 5 67.994 51.424 -19.224 1 36.12 ? O3 GOL 401 B 1 # _model_server_stats.io_time_ms 11 _model_server_stats.parse_time_ms 12 _model_server_stats.create_model_time_ms 6 _model_server_stats.query_time_ms 329 _model_server_stats.encode_time_ms 5 _model_server_stats.element_count 6 #