data_8Z2K # _model_server_result.job_id eXsJItEGQVYCHKEFfArM1A _model_server_result.datetime_utc '2024-12-01 17:38:30' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 8z2k # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"C","auth_seq_id":401}' # _entry.id 8Z2K # _exptl.entry_id 8Z2K _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 336.276 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description '4-[oxidanyl(2-phenylmethoxyethoxy)phosphoryl]benzoic acid' _entity.pdbx_number_of_molecules 2 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 120 _cell.entry_id 8Z2K _cell.length_a 84.39 _cell.length_b 84.39 _cell.length_c 64.78 _cell.Z_PDB 6 _cell.pdbx_unique_axis ? # _symmetry.entry_id 8Z2K _symmetry.cell_setting ? _symmetry.Int_Tables_number 143 _symmetry.space_group_name_Hall 'P 3' _symmetry.space_group_name_H-M 'P 3' # loop_ _pdbx_struct_assembly.method_details _pdbx_struct_assembly.oligomeric_details _pdbx_struct_assembly.oligomeric_count _pdbx_struct_assembly.details _pdbx_struct_assembly.id ? monomeric 1 author_defined_assembly 1 ? monomeric 1 author_defined_assembly 2 # loop_ _pdbx_struct_assembly_gen.asym_id_list _pdbx_struct_assembly_gen.assembly_id _pdbx_struct_assembly_gen.oper_expression A,C,D,F 1 1 B,E,G 2 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 2 C N N ? 2 E N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order disulf ? disulf1 A SG CYS 206 A CYS 250 1_555 A SG CYS 252 A CYS 296 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.031 ? disulf ? disulf2 A SG CYS 243 A CYS 287 1_555 A SG CYS 258 A CYS 302 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.029 ? disulf ? disulf3 B SG CYS 206 B CYS 250 1_555 B SG CYS 252 B CYS 296 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.032 ? disulf ? disulf4 B SG CYS 243 B CYS 287 1_555 B SG CYS 258 B CYS 302 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.031 ? metalc ? metalc1 A O SER 32 A SER 76 1_555 D CA CA . A CA 402 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.364 ? metalc ? metalc2 A O ALA 34 A ALA 78 1_555 D CA CA . A CA 402 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.739 ? metalc ? metalc3 A O PHE 37 A PHE 81 1_555 D CA CA . A CA 402 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.435 ? # _chem_comp.formula 'C16 H17 O6 P' _chem_comp.formula_weight 336.276 _chem_comp.id A1L0O _chem_comp.mon_nstd_flag . _chem_comp.name '4-[oxidanyl(2-phenylmethoxyethoxy)phosphoryl]benzoic acid' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C01 C02 A1L0O doub 1 n y C02 C03 A1L0O sing 2 n y C03 C04 A1L0O doub 3 n y C04 P05 A1L0O sing 4 n n P05 O06 A1L0O sing 5 n n O06 C07 A1L0O sing 6 n n C07 C08 A1L0O sing 7 n n C08 O09 A1L0O sing 8 n n O09 C10 A1L0O sing 9 n n C10 C11 A1L0O sing 10 n n C11 C12 A1L0O doub 11 n y C12 C13 A1L0O sing 12 n y C13 C14 A1L0O doub 13 n y C14 C15 A1L0O sing 14 n y C15 C16 A1L0O doub 15 n y C11 C16 A1L0O sing 16 n y P05 O17 A1L0O doub 17 n n P05 O18 A1L0O sing 18 n n C04 C19 A1L0O sing 19 n y C19 C20 A1L0O doub 20 n y C01 C20 A1L0O sing 21 n y C01 C21 A1L0O sing 22 n n C21 O22 A1L0O doub 23 n n C21 O23 A1L0O sing 24 n n C10 H101 A1L0O sing 25 n n C10 H102 A1L0O sing 26 n n C13 H131 A1L0O sing 27 n n C15 H151 A1L0O sing 28 n n C20 H201 A1L0O sing 29 n n C02 H021 A1L0O sing 30 n n C03 H031 A1L0O sing 31 n n C07 H072 A1L0O sing 32 n n C07 H071 A1L0O sing 33 n n C08 H081 A1L0O sing 34 n n C08 H082 A1L0O sing 35 n n C12 H121 A1L0O sing 36 n n C14 H141 A1L0O sing 37 n n C16 H161 A1L0O sing 38 n n C19 H191 A1L0O sing 39 n n O18 H1 A1L0O sing 40 n n O23 H2 A1L0O sing 41 n n # _atom_sites.entry_id 8Z2K _atom_sites.fract_transf_matrix[1][1] 0.01185 _atom_sites.fract_transf_matrix[1][2] 0.006841 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.013683 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.015437 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 2 A1L0O A 1 401 1 A1L0O LIG . D 3 CA A 1 402 1 CA CA . E 2 A1L0O B 1 401 2 A1L0O LIG . F 4 HOH A 1 501 99 HOH HOH . F 4 HOH A 2 502 41 HOH HOH . F 4 HOH A 3 503 76 HOH HOH . F 4 HOH A 4 504 20 HOH HOH . F 4 HOH A 5 505 60 HOH HOH . F 4 HOH A 6 506 72 HOH HOH . F 4 HOH A 7 507 12 HOH HOH . F 4 HOH A 8 508 11 HOH HOH . F 4 HOH A 9 509 74 HOH HOH . F 4 HOH A 10 510 24 HOH HOH . F 4 HOH A 11 511 88 HOH HOH . F 4 HOH A 12 512 40 HOH HOH . F 4 HOH A 13 513 48 HOH HOH . F 4 HOH A 14 514 10 HOH HOH . F 4 HOH A 15 515 45 HOH HOH . F 4 HOH A 16 516 89 HOH HOH . F 4 HOH A 17 517 52 HOH HOH . F 4 HOH A 18 518 79 HOH HOH . F 4 HOH A 19 519 66 HOH HOH . F 4 HOH A 20 520 29 HOH HOH . F 4 HOH A 21 521 67 HOH HOH . F 4 HOH A 22 522 71 HOH HOH . F 4 HOH A 23 523 25 HOH HOH . F 4 HOH A 24 524 49 HOH HOH . F 4 HOH A 25 525 43 HOH HOH . F 4 HOH A 26 526 35 HOH HOH . F 4 HOH A 27 527 103 HOH HOH . F 4 HOH A 28 528 54 HOH HOH . F 4 HOH A 29 529 77 HOH HOH . F 4 HOH A 30 530 30 HOH HOH . F 4 HOH A 31 531 104 HOH HOH . F 4 HOH A 32 532 94 HOH HOH . F 4 HOH A 33 533 98 HOH HOH . G 4 HOH B 1 501 92 HOH HOH . G 4 HOH B 2 502 31 HOH HOH . G 4 HOH B 3 503 38 HOH HOH . G 4 HOH B 4 504 61 HOH HOH . G 4 HOH B 5 505 68 HOH HOH . G 4 HOH B 6 506 37 HOH HOH . G 4 HOH B 7 507 22 HOH HOH . G 4 HOH B 8 508 18 HOH HOH . G 4 HOH B 9 509 13 HOH HOH . G 4 HOH B 10 510 42 HOH HOH . G 4 HOH B 11 511 87 HOH HOH . G 4 HOH B 12 512 57 HOH HOH . G 4 HOH B 13 513 55 HOH HOH . G 4 HOH B 14 514 21 HOH HOH . G 4 HOH B 15 515 63 HOH HOH . G 4 HOH B 16 516 23 HOH HOH . G 4 HOH B 17 517 44 HOH HOH . G 4 HOH B 18 518 53 HOH HOH . G 4 HOH B 19 519 84 HOH HOH . G 4 HOH B 20 520 73 HOH HOH . G 4 HOH B 21 521 85 HOH HOH . G 4 HOH B 22 522 58 HOH HOH . G 4 HOH B 23 523 16 HOH HOH . G 4 HOH B 24 524 101 HOH HOH . G 4 HOH B 25 525 4 HOH HOH . G 4 HOH B 26 526 75 HOH HOH . G 4 HOH B 27 527 6 HOH HOH . G 4 HOH B 28 528 50 HOH HOH . G 4 HOH B 29 529 93 HOH HOH . G 4 HOH B 30 530 36 HOH HOH . G 4 HOH B 31 531 2 HOH HOH . G 4 HOH B 32 532 15 HOH HOH . G 4 HOH B 33 533 47 HOH HOH . G 4 HOH B 34 534 7 HOH HOH . G 4 HOH B 35 535 59 HOH HOH . G 4 HOH B 36 536 82 HOH HOH . G 4 HOH B 37 537 9 HOH HOH . G 4 HOH B 38 538 56 HOH HOH . G 4 HOH B 39 539 62 HOH HOH . G 4 HOH B 40 540 19 HOH HOH . G 4 HOH B 41 541 32 HOH HOH . G 4 HOH B 42 542 39 HOH HOH . G 4 HOH B 43 543 70 HOH HOH . G 4 HOH B 44 544 78 HOH HOH . G 4 HOH B 45 545 8 HOH HOH . G 4 HOH B 46 546 102 HOH HOH . G 4 HOH B 47 547 81 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C10 A1L0O . . . C 2 70.285 35.181 11.038 1 19.96 ? C10 A1L0O 401 A 1 HETATM 2 C C13 A1L0O . . . C 2 70.587 31.694 12.507 1 19.71 ? C13 A1L0O 401 A 1 HETATM 3 C C15 A1L0O . . . C 2 70.102 33.217 14.288 1 19.05 ? C15 A1L0O 401 A 1 HETATM 4 C C20 A1L0O . . . C 2 68.009 43.141 9.887 1 17.08 ? C20 A1L0O 401 A 1 HETATM 5 C C21 A1L0O . . . C 2 66.572 45.134 10.412 1 19.31 ? C21 A1L0O 401 A 1 HETATM 6 C C01 A1L0O . . . C 2 66.741 43.681 9.973 1 16.99 ? C01 A1L0O 401 A 1 HETATM 7 C C02 A1L0O . . . C 2 65.64 42.898 9.662 1 17.41 ? C02 A1L0O 401 A 1 HETATM 8 C C03 A1L0O . . . C 2 65.809 41.578 9.264 1 17.74 ? C03 A1L0O 401 A 1 HETATM 9 C C04 A1L0O . . . C 2 67.081 41.036 9.172 1 16.36 ? C04 A1L0O 401 A 1 HETATM 10 C C07 A1L0O . . . C 2 68.767 37.419 9.868 1 18.98 ? C07 A1L0O 401 A 1 HETATM 11 C C08 A1L0O . . . C 2 68.225 36.13 10.477 1 19.05 ? C08 A1L0O 401 A 1 HETATM 12 C C11 A1L0O . . . C 2 70.308 34.027 12.037 1 18.62 ? C11 A1L0O 401 A 1 HETATM 13 C C12 A1L0O . . . C 2 70.564 32.739 11.598 1 19.34 ? C12 A1L0O 401 A 1 HETATM 14 C C14 A1L0O . . . C 2 70.356 31.929 13.851 1 19.6 ? C14 A1L0O 401 A 1 HETATM 15 C C16 A1L0O . . . C 2 70.08 34.266 13.382 1 19.18 ? C16 A1L0O 401 A 1 HETATM 16 C C19 A1L0O . . . C 2 68.169 41.824 9.49 1 18.17 ? C19 A1L0O 401 A 1 HETATM 17 O O06 A1L0O . . . C 2 67.792 38.411 9.99 1 18.93 ? O06 A1L0O 401 A 1 HETATM 18 O O09 A1L0O . . . C 2 69.134 35.094 10.251 1 19.81 ? O09 A1L0O 401 A 1 HETATM 19 O O17 A1L0O . . . C 2 66.092 38.678 8.079 1 17.63 -1 O17 A1L0O 401 A 1 HETATM 20 O O18 A1L0O . . . C 2 68.461 39.165 7.635 1 16.89 ? O18 A1L0O 401 A 1 HETATM 21 O O22 A1L0O . . . C 2 67.581 45.816 10.736 1 19.73 -1 O22 A1L0O 401 A 1 HETATM 22 O O23 A1L0O . . . C 2 65.427 45.654 10.455 1 20.47 ? O23 A1L0O 401 A 1 HETATM 23 P P05 A1L0O . . . C 2 67.356 39.266 8.655 1 19.28 ? P05 A1L0O 401 A 1 # _model_server_stats.io_time_ms 11 _model_server_stats.parse_time_ms 38 _model_server_stats.create_model_time_ms 6 _model_server_stats.query_time_ms 274 _model_server_stats.encode_time_ms 2 _model_server_stats.element_count 23 #