data_8Z32 # _model_server_result.job_id 3mqNnvspjxHydIhBIYGxJg _model_server_result.datetime_utc '2025-08-06 14:49:24' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 8z32 # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"D","auth_seq_id":502}' # _entry.id 8Z32 # _exptl.entry_id 8Z32 _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 319.288 _entity.id 3 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description '2-[[6-[(4-fluorophenyl)methyl]-2-methyl-5-oxidanyl-pyrimidin-4-yl]carbonylamino]ethanoic acid' _entity.pdbx_number_of_molecules 2 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 116.36 _cell.angle_gamma 90 _cell.entry_id 8Z32 _cell.length_a 65.43 _cell.length_b 67.743 _cell.length_c 67.272 _cell.Z_PDB 4 _cell.pdbx_unique_axis ? # _symmetry.entry_id 8Z32 _symmetry.cell_setting ? _symmetry.Int_Tables_number 4 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 1 21 1' # loop_ _pdbx_struct_assembly.method_details _pdbx_struct_assembly.oligomeric_details _pdbx_struct_assembly.oligomeric_count _pdbx_struct_assembly.details _pdbx_struct_assembly.id PISA monomeric 1 author_and_software_defined_assembly 1 PISA monomeric 1 author_and_software_defined_assembly 2 # loop_ _pdbx_struct_assembly_gen.asym_id_list _pdbx_struct_assembly_gen.assembly_id _pdbx_struct_assembly_gen.oper_expression A,C,D,G 1 1 B,E,F,H 2 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 3 D N N ? 3 F N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order disulf ? disulf1 B SG CYS 22 B CYS 201 1_555 B SG CYS 29 B CYS 208 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.627 ? metalc ? metalc1 A NE2 HIS 134 A HIS 313 1_555 C FE FE2 . A FE2 501 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.252 ? metalc ? metalc2 A OD2 ASP 136 A ASP 315 1_555 C FE FE2 . A FE2 501 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.216 ? metalc ? metalc3 A NE2 HIS 195 A HIS 374 1_555 C FE FE2 . A FE2 501 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.078 ? metalc ? metalc4 C FE FE2 . A FE2 501 1_555 D O1 A1L0V . A A1L0V 502 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.97 ? metalc ? metalc5 C FE FE2 . A FE2 501 1_555 D N2 A1L0V . A A1L0V 502 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.022 ? metalc ? metalc6 C FE FE2 . A FE2 501 1_555 G O HOH . A HOH 602 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.305 ? metalc ? metalc7 B NE2 HIS 134 B HIS 313 1_555 E FE FE2 . B FE2 501 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.114 ? metalc ? metalc8 B OD2 ASP 136 B ASP 315 1_555 E FE FE2 . B FE2 501 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.187 ? metalc ? metalc9 B NE2 HIS 195 B HIS 374 1_555 E FE FE2 . B FE2 501 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.178 ? metalc ? metalc10 E FE FE2 . B FE2 501 1_555 F N2 A1L0V . B A1L0V 502 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.272 ? metalc ? metalc11 E FE FE2 . B FE2 501 1_555 F O1 A1L0V . B A1L0V 502 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.164 ? metalc ? metalc12 E FE FE2 . B FE2 501 1_555 H O HOH . B HOH 608 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.147 ? # _chem_comp.formula 'C15 H14 F N3 O4' _chem_comp.formula_weight 319.288 _chem_comp.id A1L0V _chem_comp.mon_nstd_flag . _chem_comp.name '2-[[6-[(4-fluorophenyl)methyl]-2-methyl-5-oxidanyl-pyrimidin-4-yl]carbonylamino]ethanoic acid' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag F1 C13 A1L0V sing 1 n n C13 C14 A1L0V doub 2 n y C13 C12 A1L0V sing 3 n y C14 C15 A1L0V sing 4 n y C12 C11 A1L0V doub 5 n y C15 C10 A1L0V doub 6 n y C11 C10 A1L0V sing 7 n y C10 C9 A1L0V sing 8 n n O3 C7 A1L0V doub 9 n n O4 C7 A1L0V sing 10 n n C7 C6 A1L0V sing 11 n n O2 C4 A1L0V sing 12 n n C9 C1 A1L0V sing 13 n n C6 N3 A1L0V sing 14 n n N3 C5 A1L0V sing 15 n n C4 C1 A1L0V doub 16 n y C4 C3 A1L0V sing 17 n y C1 N1 A1L0V sing 18 n y C5 C3 A1L0V sing 19 n n C5 O1 A1L0V doub 20 n n C3 N2 A1L0V doub 21 n y N1 C2 A1L0V doub 22 n y N2 C2 A1L0V sing 23 n y C2 C8 A1L0V sing 24 n n C6 H1 A1L0V sing 25 n n C9 H2 A1L0V sing 26 n n C9 H3 A1L0V sing 27 n n C11 H4 A1L0V sing 28 n n C12 H5 A1L0V sing 29 n n C14 H6 A1L0V sing 30 n n O2 H7 A1L0V sing 31 n n C8 H8 A1L0V sing 32 n n C8 H9 A1L0V sing 33 n n C8 H10 A1L0V sing 34 n n O4 H11 A1L0V sing 35 n n C15 H12 A1L0V sing 36 n n C6 H13 A1L0V sing 37 n n N3 H14 A1L0V sing 38 n n # _atom_sites.entry_id 8Z32 _atom_sites.fract_transf_matrix[1][1] 0.015284 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0.007575 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.014762 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.016591 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 2 FE2 A 1 501 1 FE2 FE2 . D 3 A1L0V A 1 502 1 A1L0V IN3 . E 2 FE2 B 1 501 1 FE2 FE2 . F 3 A1L0V B 1 502 1 A1L0V IN3 . G 4 HOH A 1 601 52 HOH HOH . G 4 HOH A 2 602 50 HOH HOH . G 4 HOH A 3 603 9 HOH HOH . G 4 HOH A 4 604 3 HOH HOH . G 4 HOH A 5 605 11 HOH HOH . G 4 HOH A 6 606 17 HOH HOH . G 4 HOH A 7 607 5 HOH HOH . G 4 HOH A 8 608 54 HOH HOH . G 4 HOH A 9 609 28 HOH HOH . G 4 HOH A 10 610 45 HOH HOH . G 4 HOH A 11 611 33 HOH HOH . G 4 HOH A 12 612 18 HOH HOH . G 4 HOH A 13 613 43 HOH HOH . G 4 HOH A 14 614 22 HOH HOH . G 4 HOH A 15 615 13 HOH HOH . G 4 HOH A 16 616 51 HOH HOH . G 4 HOH A 17 617 48 HOH HOH . G 4 HOH A 18 618 36 HOH HOH . G 4 HOH A 19 619 57 HOH HOH . G 4 HOH A 20 620 44 HOH HOH . G 4 HOH A 21 621 38 HOH HOH . G 4 HOH A 22 622 42 HOH HOH . H 4 HOH B 1 601 53 HOH HOH . H 4 HOH B 2 602 16 HOH HOH . H 4 HOH B 3 603 58 HOH HOH . H 4 HOH B 4 604 55 HOH HOH . H 4 HOH B 5 605 6 HOH HOH . H 4 HOH B 6 606 34 HOH HOH . H 4 HOH B 7 607 1 HOH HOH . H 4 HOH B 8 608 8 HOH HOH . H 4 HOH B 9 609 10 HOH HOH . H 4 HOH B 10 610 21 HOH HOH . H 4 HOH B 11 611 19 HOH HOH . H 4 HOH B 12 612 15 HOH HOH . H 4 HOH B 13 613 31 HOH HOH . H 4 HOH B 14 614 26 HOH HOH . H 4 HOH B 15 615 2 HOH HOH . H 4 HOH B 16 616 14 HOH HOH . H 4 HOH B 17 617 27 HOH HOH . H 4 HOH B 18 618 60 HOH HOH . H 4 HOH B 19 619 7 HOH HOH . H 4 HOH B 20 620 24 HOH HOH . H 4 HOH B 21 621 29 HOH HOH . H 4 HOH B 22 622 4 HOH HOH . H 4 HOH B 23 623 41 HOH HOH . H 4 HOH B 24 624 56 HOH HOH . H 4 HOH B 25 625 12 HOH HOH . H 4 HOH B 26 626 46 HOH HOH . H 4 HOH B 27 627 30 HOH HOH . H 4 HOH B 28 628 32 HOH HOH . H 4 HOH B 29 629 23 HOH HOH . H 4 HOH B 30 630 39 HOH HOH . H 4 HOH B 31 631 25 HOH HOH . H 4 HOH B 32 632 40 HOH HOH . H 4 HOH B 33 633 20 HOH HOH . H 4 HOH B 34 634 47 HOH HOH . H 4 HOH B 35 635 49 HOH HOH . H 4 HOH B 36 636 59 HOH HOH . H 4 HOH B 37 637 35 HOH HOH . H 4 HOH B 38 638 37 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 A1L0V . . . D 3 -4.549 -0.009 -23.061 1 64.82 ? C1 A1L0V 502 A 1 HETATM 2 C C2 A1L0V . . . D 3 -3.665 1.322 -21.403 1 63.09 ? C2 A1L0V 502 A 1 HETATM 3 C C3 A1L0V . . . D 3 -2.252 -0.09 -22.556 1 64.11 ? C3 A1L0V 502 A 1 HETATM 4 C C4 A1L0V . . . D 3 -3.311 -0.53 -23.305 1 63.79 ? C4 A1L0V 502 A 1 HETATM 5 C C5 A1L0V . . . D 3 -0.848 -0.593 -22.738 1 64.27 ? C5 A1L0V 502 A 1 HETATM 6 C C6 A1L0V . . . D 3 0.565 -2.338 -23.636 1 66.35 ? C6 A1L0V 502 A 1 HETATM 7 C C7 A1L0V . . . D 3 0.565 -3.605 -24.478 1 67.78 ? C7 A1L0V 502 A 1 HETATM 8 C C9 A1L0V . . . D 3 -5.82 -0.394 -23.778 1 71.15 ? C9 A1L0V 502 A 1 HETATM 9 C C10 A1L0V . . . D 3 -5.824 -0.209 -25.279 1 78.38 ? C10 A1L0V 502 A 1 HETATM 10 C C11 A1L0V . . . D 3 -6.062 1.031 -25.849 1 80.28 ? C11 A1L0V 502 A 1 HETATM 11 C C12 A1L0V . . . D 3 -6.071 1.206 -27.226 1 82.28 ? C12 A1L0V 502 A 1 HETATM 12 C C14 A1L0V . . . D 3 -5.606 -1.13 -27.505 1 82 ? C14 A1L0V 502 A 1 HETATM 13 N N1 A1L0V . . . D 3 -4.725 0.918 -22.104 1 63.59 ? N1 A1L0V 502 A 1 HETATM 14 N N2 A1L0V . . . D 3 -2.419 0.866 -21.585 1 62.62 ? N2 A1L0V 502 A 1 HETATM 15 N N3 A1L0V . . . D 3 -0.703 -1.649 -23.538 1 63.15 ? N3 A1L0V 502 A 1 HETATM 16 O O1 A1L0V . . . D 3 0.08 -0.069 -22.125 1 62.23 ? O1 A1L0V 502 A 1 HETATM 17 O O2 A1L0V . . . D 3 -3.204 -1.469 -24.285 1 61.05 ? O2 A1L0V 502 A 1 HETATM 18 C C8 A1L0V . . . D 3 -3.892 2.354 -20.346 1 59.35 ? C8 A1L0V 502 A 1 HETATM 19 O O3 A1L0V . . . D 3 1.692 -4.044 -24.797 1 62.42 ? O3 A1L0V 502 A 1 HETATM 20 O O4 A1L0V . . . D 3 -0.536 -4.118 -24.787 1 74.38 ? O4 A1L0V 502 A 1 HETATM 21 C C13 A1L0V . . . D 3 -5.841 0.115 -28.015 1 81.72 ? C13 A1L0V 502 A 1 HETATM 22 C C15 A1L0V . . . D 3 -5.602 -1.281 -26.126 1 81.57 ? C15 A1L0V 502 A 1 HETATM 23 F F1 A1L0V . . . D 3 -5.846 0.276 -29.365 1 80.27 ? F1 A1L0V 502 A 1 # _model_server_stats.io_time_ms 14 _model_server_stats.parse_time_ms 12 _model_server_stats.create_model_time_ms 4 _model_server_stats.query_time_ms 258 _model_server_stats.encode_time_ms 2 _model_server_stats.element_count 23 #