data_8Z33 # _model_server_result.job_id cRnx4zcA5mq62_ACeIif-A _model_server_result.datetime_utc '2025-07-01 10:17:25' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 8z33 # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"H","auth_seq_id":503}' # _entry.id 8Z33 # _exptl.entry_id 8Z33 _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 333.314 _entity.id 4 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description '2-[[6-[2-(4-fluorophenyl)ethyl]-2-methyl-5-oxidanyl-pyrimidin-4-yl]carbonylamino]ethanoic acid' _entity.pdbx_number_of_molecules 2 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 96.35 _cell.angle_gamma 90 _cell.entry_id 8Z33 _cell.length_a 40.816 _cell.length_b 88.747 _cell.length_c 70.762 _cell.Z_PDB 4 _cell.pdbx_unique_axis ? # _symmetry.entry_id 8Z33 _symmetry.cell_setting ? _symmetry.Int_Tables_number 4 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 1 21 1' # loop_ _pdbx_struct_assembly.method_details _pdbx_struct_assembly.oligomeric_details _pdbx_struct_assembly.oligomeric_count _pdbx_struct_assembly.details _pdbx_struct_assembly.id PISA monomeric 1 author_and_software_defined_assembly 1 PISA monomeric 1 author_and_software_defined_assembly 2 # loop_ _pdbx_struct_assembly_gen.asym_id_list _pdbx_struct_assembly_gen.assembly_id _pdbx_struct_assembly_gen.oper_expression A,C,D,E,I 1 1 B,F,G,H,J 2 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 4 E N N ? 4 H N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order metalc ? metalc1 A NE2 HIS 134 A HIS 313 1_555 C FE FE2 . A FE2 501 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.177 ? metalc ? metalc2 A OD2 ASP 136 A ASP 315 1_555 C FE FE2 . A FE2 501 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.247 ? metalc ? metalc3 A NE2 HIS 195 A HIS 374 1_555 C FE FE2 . A FE2 501 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.015 ? metalc ? metalc4 C FE FE2 . A FE2 501 1_555 E O1 A1L0W . A A1L0W 503 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.95 ? metalc ? metalc5 C FE FE2 . A FE2 501 1_555 E O2 A1L0W . A A1L0W 503 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.946 ? metalc ? metalc6 C FE FE2 . A FE2 501 1_555 I O HOH . A HOH 607 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.066 ? metalc ? metalc7 B NE2 HIS 134 B HIS 313 1_555 F FE FE2 . B FE2 501 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.297 ? metalc ? metalc8 B OD2 ASP 136 B ASP 315 1_555 F FE FE2 . B FE2 501 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.157 ? metalc ? metalc9 B NE2 HIS 195 B HIS 374 1_555 F FE FE2 . B FE2 501 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.085 ? metalc ? metalc10 F FE FE2 . B FE2 501 1_555 H O2 A1L0W . B A1L0W 503 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.07 ? metalc ? metalc11 F FE FE2 . B FE2 501 1_555 H O1 A1L0W . B A1L0W 503 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.052 ? metalc ? metalc12 F FE FE2 . B FE2 501 1_555 J O HOH . B HOH 614 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.232 ? # _chem_comp.formula 'C16 H16 F N3 O4' _chem_comp.formula_weight 333.314 _chem_comp.id A1L0W _chem_comp.mon_nstd_flag . _chem_comp.name '2-[[6-[2-(4-fluorophenyl)ethyl]-2-methyl-5-oxidanyl-pyrimidin-4-yl]carbonylamino]ethanoic acid' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag F1 C14 A1L0W sing 1 n n C15 C14 A1L0W doub 2 n y C15 C16 A1L0W sing 3 n y C14 C13 A1L0W sing 4 n y C16 C11 A1L0W doub 5 n y C13 C12 A1L0W doub 6 n y C11 C12 A1L0W sing 7 n y C11 C10 A1L0W sing 8 n n C10 C9 A1L0W sing 9 n n C9 C1 A1L0W sing 10 n n N1 C1 A1L0W doub 11 n y N1 C2 A1L0W sing 12 n y C1 C4 A1L0W sing 13 n y C5 C2 A1L0W sing 14 n n C2 N2 A1L0W doub 15 n y C4 O1 A1L0W sing 16 n n C4 C3 A1L0W doub 17 n y N2 C3 A1L0W sing 18 n y C3 C6 A1L0W sing 19 n n C6 O2 A1L0W doub 20 n n C6 N3 A1L0W sing 21 n n N3 C7 A1L0W sing 22 n n C7 C8 A1L0W sing 23 n n O4 C8 A1L0W doub 24 n n C8 O3 A1L0W sing 25 n n C5 H1 A1L0W sing 26 n n C5 H2 A1L0W sing 27 n n C5 H3 A1L0W sing 28 n n C10 H4 A1L0W sing 29 n n C10 H5 A1L0W sing 30 n n C9 H6 A1L0W sing 31 n n C9 H7 A1L0W sing 32 n n C12 H8 A1L0W sing 33 n n N3 H9 A1L0W sing 34 n n C7 H10 A1L0W sing 35 n n C7 H11 A1L0W sing 36 n n C13 H12 A1L0W sing 37 n n C15 H13 A1L0W sing 38 n n C16 H14 A1L0W sing 39 n n O3 H15 A1L0W sing 40 n n O1 H16 A1L0W sing 41 n n # _atom_sites.entry_id 8Z33 _atom_sites.fract_transf_matrix[1][1] 0.0245 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0.002727 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.011268 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.014219 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 2 FE2 A 1 501 1 FE2 FE2 . D 3 F A 1 502 1 F F . E 4 A1L0W A 1 503 1 A1L0W IN4 . F 2 FE2 B 1 501 1 FE2 FE2 . G 3 F B 1 502 2 F F . H 4 A1L0W B 1 503 1 A1L0W IN4 . I 5 HOH A 1 601 22 HOH HOH . I 5 HOH A 2 602 5 HOH HOH . I 5 HOH A 3 603 33 HOH HOH . I 5 HOH A 4 604 16 HOH HOH . I 5 HOH A 5 605 2 HOH HOH . I 5 HOH A 6 606 28 HOH HOH . I 5 HOH A 7 607 36 HOH HOH . I 5 HOH A 8 608 25 HOH HOH . I 5 HOH A 9 609 20 HOH HOH . I 5 HOH A 10 610 4 HOH HOH . I 5 HOH A 11 611 11 HOH HOH . I 5 HOH A 12 612 18 HOH HOH . I 5 HOH A 13 613 10 HOH HOH . I 5 HOH A 14 614 15 HOH HOH . I 5 HOH A 15 615 34 HOH HOH . I 5 HOH A 16 616 23 HOH HOH . I 5 HOH A 17 617 35 HOH HOH . I 5 HOH A 18 618 14 HOH HOH . J 5 HOH B 1 601 1 HOH HOH . J 5 HOH B 2 602 31 HOH HOH . J 5 HOH B 3 603 19 HOH HOH . J 5 HOH B 4 604 27 HOH HOH . J 5 HOH B 5 605 7 HOH HOH . J 5 HOH B 6 606 26 HOH HOH . J 5 HOH B 7 607 30 HOH HOH . J 5 HOH B 8 608 6 HOH HOH . J 5 HOH B 9 609 17 HOH HOH . J 5 HOH B 10 610 9 HOH HOH . J 5 HOH B 11 611 8 HOH HOH . J 5 HOH B 12 612 21 HOH HOH . J 5 HOH B 13 613 32 HOH HOH . J 5 HOH B 14 614 37 HOH HOH . J 5 HOH B 15 615 12 HOH HOH . J 5 HOH B 16 616 24 HOH HOH . J 5 HOH B 17 617 13 HOH HOH . J 5 HOH B 18 618 3 HOH HOH . J 5 HOH B 19 619 29 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 A1L0W . . . H 4 13.172 31.248 -14.154 1 72.34 ? C1 A1L0W 503 B 1 HETATM 2 C C2 A1L0W . . . H 4 12.098 33.115 -14.967 1 78.86 ? C2 A1L0W 503 B 1 HETATM 3 C C3 A1L0W . . . H 4 13.29 31.795 -16.44 1 75.25 ? C3 A1L0W 503 B 1 HETATM 4 C C4 A1L0W . . . H 4 13.618 30.956 -15.409 1 73.55 ? C4 A1L0W 503 B 1 HETATM 5 C C5 A1L0W . . . H 4 11.247 34.314 -14.698 1 81.25 ? C5 A1L0W 503 B 1 HETATM 6 C C6 A1L0W . . . H 4 13.723 31.551 -17.858 1 68.65 ? C6 A1L0W 503 B 1 HETATM 7 C C10 A1L0W . . . H 4 12.494 30.628 -11.772 1 78.5 ? C10 A1L0W 503 B 1 HETATM 8 C C9 A1L0W . . . H 4 13.487 30.42 -12.935 1 73.66 ? C9 A1L0W 503 B 1 HETATM 9 C C11 A1L0W . . . H 4 12.432 29.398 -10.9 1 81.45 ? C11 A1L0W 503 B 1 HETATM 10 C C12 A1L0W . . . H 4 11.53 28.371 -11.171 1 81 ? C12 A1L0W 503 B 1 HETATM 11 N N3 A1L0W . . . H 4 12.965 32.153 -18.77 1 63.18 ? N3 A1L0W 503 B 1 HETATM 12 C C7 A1L0W . . . H 4 13.12 31.887 -20.18 1 68.51 ? C7 A1L0W 503 B 1 HETATM 13 C C13 A1L0W . . . H 4 11.479 27.23 -10.384 1 76.6 ? C13 A1L0W 503 B 1 HETATM 14 C C15 A1L0W . . . H 4 13.249 28.113 -9.019 1 78.43 ? C15 A1L0W 503 B 1 HETATM 15 C C16 A1L0W . . . H 4 13.289 29.249 -9.814 1 78.52 ? C16 A1L0W 503 B 1 HETATM 16 N N2 A1L0W . . . H 4 12.487 32.886 -16.225 1 77.94 ? N2 A1L0W 503 B 1 HETATM 17 N N1 A1L0W . . . H 4 12.408 32.332 -13.932 1 78.03 ? N1 A1L0W 503 B 1 HETATM 18 C C14 A1L0W . . . H 4 12.346 27.138 -9.331 1 78.28 ? C14 A1L0W 503 B 1 HETATM 19 O O3 A1L0W . . . H 4 11.338 33.403 -20.525 1 71.06 ? O3 A1L0W 503 B 1 HETATM 20 O O4 A1L0W . . . H 4 12.45 32.669 -22.316 1 68.38 ? O4 A1L0W 503 B 1 HETATM 21 C C8 A1L0W . . . H 4 12.229 32.724 -21.084 1 69.54 ? C8 A1L0W 503 B 1 HETATM 22 O O1 A1L0W . . . H 4 14.394 29.849 -15.555 1 74.98 ? O1 A1L0W 503 B 1 HETATM 23 O O2 A1L0W . . . H 4 14.648 30.788 -18.144 1 67.44 ? O2 A1L0W 503 B 1 HETATM 24 F F1 A1L0W . . . H 4 12.304 26.026 -8.552 1 81.3 ? F1 A1L0W 503 B 1 # _model_server_stats.io_time_ms 23 _model_server_stats.parse_time_ms 10 _model_server_stats.create_model_time_ms 4 _model_server_stats.query_time_ms 241 _model_server_stats.encode_time_ms 5 _model_server_stats.element_count 24 #