data_8Z3L # _model_server_result.job_id WIFUQ3qwxJj2yWb7sduInw _model_server_result.datetime_utc '2025-07-07 23:56:44' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 8z3l # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"B","auth_seq_id":601}' # _entry.id 8Z3L # _exptl.entry_id 8Z3L _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 785.55 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'FLAVIN-ADENINE DINUCLEOTIDE' _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 8Z3L _cell.length_a 50.84 _cell.length_b 65.6 _cell.length_c 153.13 _cell.Z_PDB 4 _cell.pdbx_unique_axis ? # _symmetry.entry_id 8Z3L _symmetry.cell_setting ? _symmetry.Int_Tables_number 19 _symmetry.space_group_name_Hall 'P 2ac 2ab' _symmetry.space_group_name_H-M 'P 21 21 21' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 2 _struct_asym.id B _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # _chem_comp.formula 'C27 H33 N9 O15 P2' _chem_comp.formula_weight 785.55 _chem_comp.id FAD _chem_comp.mon_nstd_flag . _chem_comp.name 'FLAVIN-ADENINE DINUCLEOTIDE' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag PA O1A FAD doub 83 n n PA O2A FAD sing 84 n n PA O5B FAD sing 85 n n PA O3P FAD sing 86 n n O2A HOA2 FAD sing 87 n n O5B C5B FAD sing 88 n n C5B C4B FAD sing 89 n n C5B H51A FAD sing 90 n n C5B H52A FAD sing 91 n n C4B O4B FAD sing 92 n n C4B C3B FAD sing 93 n n C4B H4B FAD sing 94 n n O4B C1B FAD sing 95 n n C3B O3B FAD sing 96 n n C3B C2B FAD sing 97 n n C3B H3B FAD sing 98 n n O3B HO3A FAD sing 99 n n C2B O2B FAD sing 100 n n C2B C1B FAD sing 101 n n C2B H2B FAD sing 102 n n O2B HO2A FAD sing 103 n n C1B N9A FAD sing 104 n n C1B H1B FAD sing 105 n n N9A C8A FAD sing 106 n y N9A C4A FAD sing 107 n y C8A N7A FAD doub 108 n y C8A H8A FAD sing 109 n n N7A C5A FAD sing 110 n y C5A C6A FAD sing 111 n y C5A C4A FAD doub 112 n y C6A N6A FAD sing 113 n n C6A N1A FAD doub 114 n y N6A H61A FAD sing 115 n n N6A H62A FAD sing 116 n n N1A C2A FAD sing 117 n y C2A N3A FAD doub 118 n y C2A H2A FAD sing 119 n n N3A C4A FAD sing 120 n y N1 C2 FAD sing 121 n n N1 C10 FAD doub 122 n n C2 O2 FAD doub 123 n n C2 N3 FAD sing 124 n n N3 C4 FAD sing 125 n n N3 HN3 FAD sing 126 n n C4 O4 FAD doub 127 n n C4 C4X FAD sing 128 n n C4X N5 FAD doub 129 n n C4X C10 FAD sing 130 n n N5 C5X FAD sing 131 n n C5X C6 FAD doub 132 n y C5X C9A FAD sing 133 n y C6 C7 FAD sing 134 n y C6 H6 FAD sing 135 n n C7 C7M FAD sing 136 n n C7 C8 FAD doub 137 n y C7M HM71 FAD sing 138 n n C7M HM72 FAD sing 139 n n C7M HM73 FAD sing 140 n n C8 C8M FAD sing 141 n n C8 C9 FAD sing 142 n y C8M HM81 FAD sing 143 n n C8M HM82 FAD sing 144 n n C8M HM83 FAD sing 145 n n C9 C9A FAD doub 146 n y C9 H9 FAD sing 147 n n C9A N10 FAD sing 148 n n N10 C10 FAD sing 149 n n N10 C1' FAD sing 150 n n C1' C2' FAD sing 151 n n C1' "H1'1" FAD sing 152 n n C1' "H1'2" FAD sing 153 n n C2' O2' FAD sing 154 n n C2' C3' FAD sing 155 n n C2' H2' FAD sing 156 n n O2' HO2' FAD sing 157 n n C3' O3' FAD sing 158 n n C3' C4' FAD sing 159 n n C3' H3' FAD sing 160 n n O3' HO3' FAD sing 161 n n C4' O4' FAD sing 162 n n C4' C5' FAD sing 163 n n C4' H4' FAD sing 164 n n O4' HO4' FAD sing 165 n n C5' O5' FAD sing 166 n n C5' "H5'1" FAD sing 167 n n C5' "H5'2" FAD sing 168 n n O5' P FAD sing 169 n n P O1P FAD doub 170 n n P O2P FAD sing 171 n n P O3P FAD sing 172 n n O2P HOP2 FAD sing 173 n n # _atom_sites.entry_id 8Z3L _atom_sites.fract_transf_matrix[1][1] 0.01967 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.015244 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.00653 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 FAD A 1 601 602 FAD FAD . C 3 CL A 1 602 1 CL CL . D 4 HOH A 1 701 48 HOH HOH . D 4 HOH A 2 702 126 HOH HOH . D 4 HOH A 3 703 85 HOH HOH . D 4 HOH A 4 704 101 HOH HOH . D 4 HOH A 5 705 44 HOH HOH . D 4 HOH A 6 706 139 HOH HOH . D 4 HOH A 7 707 93 HOH HOH . D 4 HOH A 8 708 77 HOH HOH . D 4 HOH A 9 709 103 HOH HOH . D 4 HOH A 10 710 40 HOH HOH . D 4 HOH A 11 711 144 HOH HOH . D 4 HOH A 12 712 129 HOH HOH . D 4 HOH A 13 713 83 HOH HOH . D 4 HOH A 14 714 92 HOH HOH . D 4 HOH A 15 715 11 HOH HOH . D 4 HOH A 16 716 141 HOH HOH . D 4 HOH A 17 717 117 HOH HOH . D 4 HOH A 18 718 26 HOH HOH . D 4 HOH A 19 719 130 HOH HOH . D 4 HOH A 20 720 19 HOH HOH . D 4 HOH A 21 721 28 HOH HOH . D 4 HOH A 22 722 124 HOH HOH . D 4 HOH A 23 723 51 HOH HOH . D 4 HOH A 24 724 70 HOH HOH . D 4 HOH A 25 725 118 HOH HOH . D 4 HOH A 26 726 123 HOH HOH . D 4 HOH A 27 727 108 HOH HOH . D 4 HOH A 28 728 67 HOH HOH . D 4 HOH A 29 729 36 HOH HOH . D 4 HOH A 30 730 143 HOH HOH . D 4 HOH A 31 731 110 HOH HOH . D 4 HOH A 32 732 31 HOH HOH . D 4 HOH A 33 733 7 HOH HOH . D 4 HOH A 34 734 34 HOH HOH . D 4 HOH A 35 735 106 HOH HOH . D 4 HOH A 36 736 114 HOH HOH . D 4 HOH A 37 737 39 HOH HOH . D 4 HOH A 38 738 43 HOH HOH . D 4 HOH A 39 739 68 HOH HOH . D 4 HOH A 40 740 12 HOH HOH . D 4 HOH A 41 741 1 HOH HOH . D 4 HOH A 42 742 46 HOH HOH . D 4 HOH A 43 743 23 HOH HOH . D 4 HOH A 44 744 119 HOH HOH . D 4 HOH A 45 745 140 HOH HOH . D 4 HOH A 46 746 13 HOH HOH . D 4 HOH A 47 747 30 HOH HOH . D 4 HOH A 48 748 113 HOH HOH . D 4 HOH A 49 749 111 HOH HOH . D 4 HOH A 50 750 99 HOH HOH . D 4 HOH A 51 751 116 HOH HOH . D 4 HOH A 52 752 25 HOH HOH . D 4 HOH A 53 753 107 HOH HOH . D 4 HOH A 54 754 109 HOH HOH . D 4 HOH A 55 755 14 HOH HOH . D 4 HOH A 56 756 4 HOH HOH . D 4 HOH A 57 757 79 HOH HOH . D 4 HOH A 58 758 115 HOH HOH . D 4 HOH A 59 759 58 HOH HOH . D 4 HOH A 60 760 94 HOH HOH . D 4 HOH A 61 761 2 HOH HOH . D 4 HOH A 62 762 3 HOH HOH . D 4 HOH A 63 763 53 HOH HOH . D 4 HOH A 64 764 32 HOH HOH . D 4 HOH A 65 765 29 HOH HOH . D 4 HOH A 66 766 54 HOH HOH . D 4 HOH A 67 767 122 HOH HOH . D 4 HOH A 68 768 38 HOH HOH . D 4 HOH A 69 769 104 HOH HOH . D 4 HOH A 70 770 15 HOH HOH . D 4 HOH A 71 771 65 HOH HOH . D 4 HOH A 72 772 8 HOH HOH . D 4 HOH A 73 773 16 HOH HOH . D 4 HOH A 74 774 9 HOH HOH . D 4 HOH A 75 775 10 HOH HOH . D 4 HOH A 76 776 52 HOH HOH . D 4 HOH A 77 777 132 HOH HOH . D 4 HOH A 78 778 142 HOH HOH . D 4 HOH A 79 779 127 HOH HOH . D 4 HOH A 80 780 18 HOH HOH . D 4 HOH A 81 781 24 HOH HOH . D 4 HOH A 82 782 20 HOH HOH . D 4 HOH A 83 783 22 HOH HOH . D 4 HOH A 84 784 33 HOH HOH . D 4 HOH A 85 785 35 HOH HOH . D 4 HOH A 86 786 121 HOH HOH . D 4 HOH A 87 787 125 HOH HOH . D 4 HOH A 88 788 112 HOH HOH . D 4 HOH A 89 789 50 HOH HOH . D 4 HOH A 90 790 96 HOH HOH . D 4 HOH A 91 791 66 HOH HOH . D 4 HOH A 92 792 80 HOH HOH . D 4 HOH A 93 793 5 HOH HOH . D 4 HOH A 94 794 62 HOH HOH . D 4 HOH A 95 795 45 HOH HOH . D 4 HOH A 96 796 60 HOH HOH . D 4 HOH A 97 797 6 HOH HOH . D 4 HOH A 98 798 61 HOH HOH . D 4 HOH A 99 799 75 HOH HOH . D 4 HOH A 100 800 47 HOH HOH . D 4 HOH A 101 801 87 HOH HOH . D 4 HOH A 102 802 59 HOH HOH . D 4 HOH A 103 803 134 HOH HOH . D 4 HOH A 104 804 91 HOH HOH . D 4 HOH A 105 805 81 HOH HOH . D 4 HOH A 106 806 78 HOH HOH . D 4 HOH A 107 807 76 HOH HOH . D 4 HOH A 108 808 63 HOH HOH . D 4 HOH A 109 809 90 HOH HOH . D 4 HOH A 110 810 17 HOH HOH . D 4 HOH A 111 811 100 HOH HOH . D 4 HOH A 112 812 64 HOH HOH . D 4 HOH A 113 813 21 HOH HOH . D 4 HOH A 114 814 138 HOH HOH . D 4 HOH A 115 815 135 HOH HOH . D 4 HOH A 116 816 69 HOH HOH . D 4 HOH A 117 817 98 HOH HOH . D 4 HOH A 118 818 145 HOH HOH . D 4 HOH A 119 819 49 HOH HOH . D 4 HOH A 120 820 86 HOH HOH . D 4 HOH A 121 821 95 HOH HOH . D 4 HOH A 122 822 128 HOH HOH . D 4 HOH A 123 823 74 HOH HOH . D 4 HOH A 124 824 88 HOH HOH . D 4 HOH A 125 825 57 HOH HOH . D 4 HOH A 126 826 41 HOH HOH . D 4 HOH A 127 827 42 HOH HOH . D 4 HOH A 128 828 37 HOH HOH . D 4 HOH A 129 829 136 HOH HOH . D 4 HOH A 130 830 72 HOH HOH . D 4 HOH A 131 831 120 HOH HOH . D 4 HOH A 132 832 55 HOH HOH . D 4 HOH A 133 833 27 HOH HOH . D 4 HOH A 134 834 89 HOH HOH . D 4 HOH A 135 835 73 HOH HOH . D 4 HOH A 136 836 105 HOH HOH . D 4 HOH A 137 837 102 HOH HOH . D 4 HOH A 138 838 56 HOH HOH . D 4 HOH A 139 839 84 HOH HOH . D 4 HOH A 140 840 97 HOH HOH . D 4 HOH A 141 841 133 HOH HOH . D 4 HOH A 142 842 137 HOH HOH . D 4 HOH A 143 843 71 HOH HOH . D 4 HOH A 144 844 82 HOH HOH . D 4 HOH A 145 845 131 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 P PA FAD . . . B 2 22.482 -15.16 -19.242 1 2.73 ? PA FAD 601 A 1 HETATM 2 O O1A FAD . . . B 2 22.94 -15.306 -17.838 1 4.39 ? O1A FAD 601 A 1 HETATM 3 O O2A FAD . . . B 2 22.521 -16.306 -20.178 1 4.7 ? O2A FAD 601 A 1 HETATM 4 O O5B FAD . . . B 2 23.263 -13.953 -19.973 1 4.13 ? O5B FAD 601 A 1 HETATM 5 C C5B FAD . . . B 2 23.8 -12.776 -19.323 1 5.43 ? C5B FAD 601 A 1 HETATM 6 C C4B FAD . . . B 2 23.301 -11.535 -20.026 1 4.99 ? C4B FAD 601 A 1 HETATM 7 O O4B FAD . . . B 2 23.631 -11.569 -21.442 1 3.57 ? O4B FAD 601 A 1 HETATM 8 C C3B FAD . . . B 2 21.779 -11.344 -20.013 1 4.53 ? C3B FAD 601 A 1 HETATM 9 O O3B FAD . . . B 2 21.329 -10.87 -18.748 1 5.25 ? O3B FAD 601 A 1 HETATM 10 C C2B FAD . . . B 2 21.587 -10.378 -21.185 1 4.68 ? C2B FAD 601 A 1 HETATM 11 O O2B FAD . . . B 2 21.877 -9.038 -20.853 1 6.58 ? O2B FAD 601 A 1 HETATM 12 C C1B FAD . . . B 2 22.605 -10.934 -22.177 1 4.42 ? C1B FAD 601 A 1 HETATM 13 N N9A FAD . . . B 2 22.028 -11.896 -23.088 1 5.11 ? N9A FAD 601 A 1 HETATM 14 C C8A FAD . . . B 2 21.866 -13.251 -22.875 1 4.07 ? C8A FAD 601 A 1 HETATM 15 N N7A FAD . . . B 2 21.314 -13.856 -23.892 1 5.23 ? N7A FAD 601 A 1 HETATM 16 C C5A FAD . . . B 2 21.075 -12.85 -24.816 1 6.45 ? C5A FAD 601 A 1 HETATM 17 C C6A FAD . . . B 2 20.479 -12.861 -26.09 1 6.75 ? C6A FAD 601 A 1 HETATM 18 N N6A FAD . . . B 2 20.042 -13.963 -26.716 1 6.02 ? N6A FAD 601 A 1 HETATM 19 N N1A FAD . . . B 2 20.364 -11.669 -26.709 1 6.77 ? N1A FAD 601 A 1 HETATM 20 C C2A FAD . . . B 2 20.817 -10.561 -26.102 1 4.91 ? C2A FAD 601 A 1 HETATM 21 N N3A FAD . . . B 2 21.417 -10.434 -24.926 1 6.92 ? N3A FAD 601 A 1 HETATM 22 C C4A FAD . . . B 2 21.491 -11.63 -24.314 1 5.35 ? C4A FAD 601 A 1 HETATM 23 N N1 FAD . . . B 2 16.785 -10.344 -23.386 1 3.98 ? N1 FAD 601 A 1 HETATM 24 C C2 FAD . . . B 2 16.556 -9.233 -22.668 1 5.04 ? C2 FAD 601 A 1 HETATM 25 O O2 FAD . . . B 2 17.351 -8.854 -21.825 1 5.58 ? O2 FAD 601 A 1 HETATM 26 N N3 FAD . . . B 2 15.455 -8.466 -22.867 1 5.01 ? N3 FAD 601 A 1 HETATM 27 C C4 FAD . . . B 2 14.476 -8.801 -23.761 1 5.79 ? C4 FAD 601 A 1 HETATM 28 O O4 FAD . . . B 2 13.515 -8.037 -23.916 1 6.39 ? O4 FAD 601 A 1 HETATM 29 C C4X FAD . . . B 2 14.623 -10.048 -24.455 1 5.54 ? C4X FAD 601 A 1 HETATM 30 N N5 FAD . . . B 2 13.684 -10.449 -25.28 1 4.89 ? N5 FAD 601 A 1 HETATM 31 C C5X FAD . . . B 2 13.831 -11.682 -25.866 1 4.98 ? C5X FAD 601 A 1 HETATM 32 C C6 FAD . . . B 2 12.811 -12.148 -26.722 1 8.52 ? C6 FAD 601 A 1 HETATM 33 C C7 FAD . . . B 2 12.905 -13.372 -27.358 1 5.3 ? C7 FAD 601 A 1 HETATM 34 C C7M FAD . . . B 2 11.792 -13.826 -28.266 1 8.1 ? C7M FAD 601 A 1 HETATM 35 C C8 FAD . . . B 2 14.051 -14.191 -27.128 1 6.19 ? C8 FAD 601 A 1 HETATM 36 C C8M FAD . . . B 2 14.207 -15.526 -27.81 1 5.32 ? C8M FAD 601 A 1 HETATM 37 C C9 FAD . . . B 2 15.085 -13.706 -26.361 1 5.22 ? C9 FAD 601 A 1 HETATM 38 C C9A FAD . . . B 2 15.002 -12.461 -25.705 1 5.5 ? C9A FAD 601 A 1 HETATM 39 N N10 FAD . . . B 2 15.996 -11.981 -24.852 1 5.34 ? N10 FAD 601 A 1 HETATM 40 C C10 FAD . . . B 2 15.836 -10.77 -24.197 1 4.6 ? C10 FAD 601 A 1 HETATM 41 C C1' FAD . . . B 2 17.315 -12.651 -24.774 1 4.43 ? C1' FAD 601 A 1 HETATM 42 C C2' FAD . . . B 2 17.546 -13.684 -23.72 1 4.39 ? C2' FAD 601 A 1 HETATM 43 O O2' FAD . . . B 2 16.556 -14.665 -23.769 1 3.64 ? O2' FAD 601 A 1 HETATM 44 C C3' FAD . . . B 2 17.68 -13.08 -22.327 1 4.5 ? C3' FAD 601 A 1 HETATM 45 O O3' FAD . . . B 2 18.669 -12.019 -22.315 1 3.57 ? O3' FAD 601 A 1 HETATM 46 C C4' FAD . . . B 2 18.01 -14.128 -21.265 1 4.51 ? C4' FAD 601 A 1 HETATM 47 O O4' FAD . . . B 2 16.942 -15.079 -21.148 1 4.5 ? O4' FAD 601 A 1 HETATM 48 C C5' FAD . . . B 2 18.229 -13.468 -19.929 1 3.75 ? C5' FAD 601 A 1 HETATM 49 O O5' FAD . . . B 2 18.555 -14.484 -18.973 1 2.66 ? O5' FAD 601 A 1 HETATM 50 P P FAD . . . B 2 19.886 -14.342 -18.108 1 3.88 ? P FAD 601 A 1 HETATM 51 O O1P FAD . . . B 2 20.083 -12.96 -17.613 1 4.93 ? O1P FAD 601 A 1 HETATM 52 O O2P FAD . . . B 2 19.823 -15.476 -17.148 1 3.5 ? O2P FAD 601 A 1 HETATM 53 O O3P FAD . . . B 2 20.984 -14.603 -19.25 1 3.48 ? O3P FAD 601 A 1 # _model_server_stats.io_time_ms 89 _model_server_stats.parse_time_ms 19 _model_server_stats.create_model_time_ms 9 _model_server_stats.query_time_ms 450 _model_server_stats.encode_time_ms 11 _model_server_stats.element_count 53 #