data_8Z47 # _model_server_result.job_id hLjyglwodYy2AUgW_TNXrg _model_server_result.datetime_utc '2025-07-27 14:57:33' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 8z47 # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"B","auth_seq_id":601}' # _entry.id 8Z47 # _exptl.entry_id 8Z47 _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 180.156 _entity.id 2 _entity.src_method nat _entity.type non-polymer _entity.pdbx_description alpha-D-galactopyranose _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 8Z47 _cell.length_a 163.831 _cell.length_b 163.831 _cell.length_c 50.857 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? # _symmetry.entry_id 8Z47 _symmetry.cell_setting ? _symmetry.Int_Tables_number 79 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'I 4' # _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details tetrameric _pdbx_struct_assembly.oligomeric_count 4 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.id 1 # loop_ _pdbx_struct_assembly_gen.asym_id_list _pdbx_struct_assembly_gen.assembly_id _pdbx_struct_assembly_gen.oper_expression A,B,C 1 1 A,B,C 1 2 A,B,C 1 3 A,B,C 1 4 # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 2 'crystal symmetry operation' 2_555 -x,-y,z -1 0 0 0 -1 0 0 0 1 0 0 0 3 'crystal symmetry operation' 3_555 -y,x,z 0 -1 0 1 0 0 0 0 1 0 0 0 4 'crystal symmetry operation' 4_555 y,-x,z 0 1 0 -1 0 0 0 0 1 0 0 0 # _struct_asym.details ? _struct_asym.entity_id 2 _struct_asym.id B _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # _chem_comp.formula 'C6 H12 O6' _chem_comp.formula_weight 180.156 _chem_comp.id GLA _chem_comp.mon_nstd_flag . _chem_comp.name alpha-D-galactopyranose _chem_comp.type 'd-saccharide, alpha linking' _chem_comp.pdbx_synonyms 'alpha-D-galactose;D-galactose;galactose;ALPHA D-GALACTOSE' # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C1 C2 GLA sing 83 n n C1 O1 GLA sing 84 n n C1 O5 GLA sing 85 n n C1 H1 GLA sing 86 n n C2 C3 GLA sing 87 n n C2 O2 GLA sing 88 n n C2 H2 GLA sing 89 n n C3 C4 GLA sing 90 n n C3 O3 GLA sing 91 n n C3 H3 GLA sing 92 n n C4 C5 GLA sing 93 n n C4 O4 GLA sing 94 n n C4 H4 GLA sing 95 n n C5 C6 GLA sing 96 n n C5 O5 GLA sing 97 n n C5 H5 GLA sing 98 n n C6 O6 GLA sing 99 n n C6 H61 GLA sing 100 n n C6 H62 GLA sing 101 n n O1 HO1 GLA sing 102 n n O2 HO2 GLA sing 103 n n O3 HO3 GLA sing 104 n n O4 HO4 GLA sing 105 n n O6 HO6 GLA sing 106 n n # loop_ _pdbx_chem_comp_identifier.comp_id _pdbx_chem_comp_identifier.identifier _pdbx_chem_comp_identifier.type _pdbx_chem_comp_identifier.program _pdbx_chem_comp_identifier.program_version GLA DGalpa 'CONDENSED IUPAC CARBOHYDRATE SYMBOL' GMML 1 GLA a-D-galactopyranose 'COMMON NAME' GMML 1 GLA a-D-Galp 'IUPAC CARBOHYDRATE SYMBOL' PDB-CARE 1 GLA Gal 'SNFG CARBOHYDRATE SYMBOL' GMML 1 # _atom_sites.entry_id 8Z47 _atom_sites.fract_transf_matrix[1][1] 0.006104 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.006104 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.019663 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 GLA A 1 601 1 GLA GLA . C 3 HOH A 1 701 155 HOH HOH . C 3 HOH A 2 702 268 HOH HOH . C 3 HOH A 3 703 162 HOH HOH . C 3 HOH A 4 704 10 HOH HOH . C 3 HOH A 5 705 13 HOH HOH . C 3 HOH A 6 706 78 HOH HOH . C 3 HOH A 7 707 98 HOH HOH . C 3 HOH A 8 708 82 HOH HOH . C 3 HOH A 9 709 266 HOH HOH . C 3 HOH A 10 710 278 HOH HOH . C 3 HOH A 11 711 11 HOH HOH . C 3 HOH A 12 712 106 HOH HOH . C 3 HOH A 13 713 202 HOH HOH . C 3 HOH A 14 714 97 HOH HOH . C 3 HOH A 15 715 100 HOH HOH . C 3 HOH A 16 716 51 HOH HOH . C 3 HOH A 17 717 148 HOH HOH . C 3 HOH A 18 718 115 HOH HOH . C 3 HOH A 19 719 130 HOH HOH . C 3 HOH A 20 720 126 HOH HOH . C 3 HOH A 21 721 147 HOH HOH . C 3 HOH A 22 722 33 HOH HOH . C 3 HOH A 23 723 67 HOH HOH . C 3 HOH A 24 724 2 HOH HOH . C 3 HOH A 25 725 267 HOH HOH . C 3 HOH A 26 726 66 HOH HOH . C 3 HOH A 27 727 19 HOH HOH . C 3 HOH A 28 728 222 HOH HOH . C 3 HOH A 29 729 204 HOH HOH . C 3 HOH A 30 730 28 HOH HOH . C 3 HOH A 31 731 29 HOH HOH . C 3 HOH A 32 732 112 HOH HOH . C 3 HOH A 33 733 240 HOH HOH . C 3 HOH A 34 734 194 HOH HOH . C 3 HOH A 35 735 3 HOH HOH . C 3 HOH A 36 736 235 HOH HOH . C 3 HOH A 37 737 128 HOH HOH . C 3 HOH A 38 738 53 HOH HOH . C 3 HOH A 39 739 25 HOH HOH . C 3 HOH A 40 740 245 HOH HOH . C 3 HOH A 41 741 165 HOH HOH . C 3 HOH A 42 742 69 HOH HOH . C 3 HOH A 43 743 197 HOH HOH . C 3 HOH A 44 744 131 HOH HOH . C 3 HOH A 45 745 37 HOH HOH . C 3 HOH A 46 746 156 HOH HOH . C 3 HOH A 47 747 132 HOH HOH . C 3 HOH A 48 748 108 HOH HOH . C 3 HOH A 49 749 45 HOH HOH . C 3 HOH A 50 750 127 HOH HOH . C 3 HOH A 51 751 21 HOH HOH . C 3 HOH A 52 752 14 HOH HOH . C 3 HOH A 53 753 88 HOH HOH . C 3 HOH A 54 754 178 HOH HOH . C 3 HOH A 55 755 95 HOH HOH . C 3 HOH A 56 756 116 HOH HOH . C 3 HOH A 57 757 77 HOH HOH . C 3 HOH A 58 758 206 HOH HOH . C 3 HOH A 59 759 36 HOH HOH . C 3 HOH A 60 760 232 HOH HOH . C 3 HOH A 61 761 5 HOH HOH . C 3 HOH A 62 762 86 HOH HOH . C 3 HOH A 63 763 43 HOH HOH . C 3 HOH A 64 764 139 HOH HOH . C 3 HOH A 65 765 38 HOH HOH . C 3 HOH A 66 766 124 HOH HOH . C 3 HOH A 67 767 270 HOH HOH . C 3 HOH A 68 768 281 HOH HOH . C 3 HOH A 69 769 111 HOH HOH . C 3 HOH A 70 770 83 HOH HOH . C 3 HOH A 71 771 56 HOH HOH . C 3 HOH A 72 772 94 HOH HOH . C 3 HOH A 73 773 79 HOH HOH . C 3 HOH A 74 774 30 HOH HOH . C 3 HOH A 75 775 40 HOH HOH . C 3 HOH A 76 776 125 HOH HOH . C 3 HOH A 77 777 46 HOH HOH . C 3 HOH A 78 778 118 HOH HOH . C 3 HOH A 79 779 58 HOH HOH . C 3 HOH A 80 780 120 HOH HOH . C 3 HOH A 81 781 113 HOH HOH . C 3 HOH A 82 782 72 HOH HOH . C 3 HOH A 83 783 135 HOH HOH . C 3 HOH A 84 784 196 HOH HOH . C 3 HOH A 85 785 39 HOH HOH . C 3 HOH A 86 786 76 HOH HOH . C 3 HOH A 87 787 158 HOH HOH . C 3 HOH A 88 788 34 HOH HOH . C 3 HOH A 89 789 171 HOH HOH . C 3 HOH A 90 790 271 HOH HOH . C 3 HOH A 91 791 91 HOH HOH . C 3 HOH A 92 792 61 HOH HOH . C 3 HOH A 93 793 20 HOH HOH . C 3 HOH A 94 794 16 HOH HOH . C 3 HOH A 95 795 238 HOH HOH . C 3 HOH A 96 796 55 HOH HOH . C 3 HOH A 97 797 42 HOH HOH . C 3 HOH A 98 798 192 HOH HOH . C 3 HOH A 99 799 141 HOH HOH . C 3 HOH A 100 800 161 HOH HOH . C 3 HOH A 101 801 64 HOH HOH . C 3 HOH A 102 802 104 HOH HOH . C 3 HOH A 103 803 256 HOH HOH . C 3 HOH A 104 804 190 HOH HOH . C 3 HOH A 105 805 250 HOH HOH . C 3 HOH A 106 806 201 HOH HOH . C 3 HOH A 107 807 89 HOH HOH . C 3 HOH A 108 808 184 HOH HOH . C 3 HOH A 109 809 96 HOH HOH . C 3 HOH A 110 810 261 HOH HOH . C 3 HOH A 111 811 101 HOH HOH . C 3 HOH A 112 812 12 HOH HOH . C 3 HOH A 113 813 4 HOH HOH . C 3 HOH A 114 814 8 HOH HOH . C 3 HOH A 115 815 54 HOH HOH . C 3 HOH A 116 816 50 HOH HOH . C 3 HOH A 117 817 57 HOH HOH . C 3 HOH A 118 818 105 HOH HOH . C 3 HOH A 119 819 119 HOH HOH . C 3 HOH A 120 820 286 HOH HOH . C 3 HOH A 121 821 219 HOH HOH . C 3 HOH A 122 822 80 HOH HOH . C 3 HOH A 123 823 214 HOH HOH . C 3 HOH A 124 824 107 HOH HOH . C 3 HOH A 125 825 246 HOH HOH . C 3 HOH A 126 826 258 HOH HOH . C 3 HOH A 127 827 122 HOH HOH . C 3 HOH A 128 828 134 HOH HOH . C 3 HOH A 129 829 17 HOH HOH . C 3 HOH A 130 830 15 HOH HOH . C 3 HOH A 131 831 186 HOH HOH . C 3 HOH A 132 832 44 HOH HOH . C 3 HOH A 133 833 109 HOH HOH . C 3 HOH A 134 834 93 HOH HOH . C 3 HOH A 135 835 188 HOH HOH . C 3 HOH A 136 836 26 HOH HOH . C 3 HOH A 137 837 48 HOH HOH . C 3 HOH A 138 838 52 HOH HOH . C 3 HOH A 139 839 6 HOH HOH . C 3 HOH A 140 840 181 HOH HOH . C 3 HOH A 141 841 114 HOH HOH . C 3 HOH A 142 842 254 HOH HOH . C 3 HOH A 143 843 263 HOH HOH . C 3 HOH A 144 844 81 HOH HOH . C 3 HOH A 145 845 68 HOH HOH . C 3 HOH A 146 846 150 HOH HOH . C 3 HOH A 147 847 103 HOH HOH . C 3 HOH A 148 848 203 HOH HOH . C 3 HOH A 149 849 41 HOH HOH . C 3 HOH A 150 850 7 HOH HOH . C 3 HOH A 151 851 22 HOH HOH . C 3 HOH A 152 852 47 HOH HOH . C 3 HOH A 153 853 31 HOH HOH . C 3 HOH A 154 854 123 HOH HOH . C 3 HOH A 155 855 117 HOH HOH . C 3 HOH A 156 856 185 HOH HOH . C 3 HOH A 157 857 49 HOH HOH . C 3 HOH A 158 858 24 HOH HOH . C 3 HOH A 159 859 59 HOH HOH . C 3 HOH A 160 860 193 HOH HOH . C 3 HOH A 161 861 18 HOH HOH . C 3 HOH A 162 862 70 HOH HOH . C 3 HOH A 163 863 284 HOH HOH . C 3 HOH A 164 864 249 HOH HOH . C 3 HOH A 165 865 60 HOH HOH . C 3 HOH A 166 866 236 HOH HOH . C 3 HOH A 167 867 63 HOH HOH . C 3 HOH A 168 868 84 HOH HOH . C 3 HOH A 169 869 35 HOH HOH . C 3 HOH A 170 870 272 HOH HOH . C 3 HOH A 171 871 265 HOH HOH . C 3 HOH A 172 872 180 HOH HOH . C 3 HOH A 173 873 149 HOH HOH . C 3 HOH A 174 874 285 HOH HOH . C 3 HOH A 175 875 136 HOH HOH . C 3 HOH A 176 876 199 HOH HOH . C 3 HOH A 177 877 208 HOH HOH . C 3 HOH A 178 878 87 HOH HOH . C 3 HOH A 179 879 269 HOH HOH . C 3 HOH A 180 880 133 HOH HOH . C 3 HOH A 181 881 176 HOH HOH . C 3 HOH A 182 882 223 HOH HOH . C 3 HOH A 183 883 90 HOH HOH . C 3 HOH A 184 884 230 HOH HOH . C 3 HOH A 185 885 27 HOH HOH . C 3 HOH A 186 886 129 HOH HOH . C 3 HOH A 187 887 138 HOH HOH . C 3 HOH A 188 888 159 HOH HOH . C 3 HOH A 189 889 75 HOH HOH . C 3 HOH A 190 890 168 HOH HOH . C 3 HOH A 191 891 287 HOH HOH . C 3 HOH A 192 892 151 HOH HOH . C 3 HOH A 193 893 237 HOH HOH . C 3 HOH A 194 894 274 HOH HOH . C 3 HOH A 195 895 277 HOH HOH . C 3 HOH A 196 896 166 HOH HOH . C 3 HOH A 197 897 163 HOH HOH . C 3 HOH A 198 898 102 HOH HOH . C 3 HOH A 199 899 121 HOH HOH . C 3 HOH A 200 900 280 HOH HOH . C 3 HOH A 201 901 233 HOH HOH . C 3 HOH A 202 902 264 HOH HOH . C 3 HOH A 203 903 221 HOH HOH . C 3 HOH A 204 904 273 HOH HOH . C 3 HOH A 205 905 217 HOH HOH . C 3 HOH A 206 906 279 HOH HOH . C 3 HOH A 207 907 170 HOH HOH . C 3 HOH A 208 908 160 HOH HOH . C 3 HOH A 209 909 282 HOH HOH . C 3 HOH A 210 910 262 HOH HOH . C 3 HOH A 211 911 253 HOH HOH . C 3 HOH A 212 912 227 HOH HOH . C 3 HOH A 213 913 251 HOH HOH . C 3 HOH A 214 914 234 HOH HOH . C 3 HOH A 215 915 137 HOH HOH . C 3 HOH A 216 916 247 HOH HOH . C 3 HOH A 217 917 283 HOH HOH . C 3 HOH A 218 918 255 HOH HOH . C 3 HOH A 219 919 259 HOH HOH . C 3 HOH A 220 920 276 HOH HOH . C 3 HOH A 221 921 231 HOH HOH . C 3 HOH A 222 922 275 HOH HOH . C 3 HOH A 223 923 257 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 GLA . . . B 2 -37.907 -6.791 4.635 1 34.43 0 C1 GLA 601 A 1 HETATM 2 C C2 GLA . . . B 2 -38.434 -6.375 3.227 1 28.58 0 C2 GLA 601 A 1 HETATM 3 C C3 GLA . . . B 2 -37.331 -5.839 2.31 1 33.15 0 C3 GLA 601 A 1 HETATM 4 C C4 GLA . . . B 2 -36.501 -4.811 3.05 1 36.95 0 C4 GLA 601 A 1 HETATM 5 C C5 GLA . . . B 2 -35.907 -5.414 4.31 1 40.36 0 C5 GLA 601 A 1 HETATM 6 C C6 GLA . . . B 2 -35.017 -4.433 5.067 1 41.61 0 C6 GLA 601 A 1 HETATM 7 O O1 GLA . . . B 2 -37.286 -8.011 4.558 1 42.1 0 O1 GLA 601 A 1 HETATM 8 O O2 GLA . . . B 2 -39.149 -7.426 2.584 1 28.68 0 O2 GLA 601 A 1 HETATM 9 O O3 GLA . . . B 2 -37.927 -5.268 1.151 1 27.15 0 O3 GLA 601 A 1 HETATM 10 O O4 GLA . . . B 2 -37.339 -3.732 3.413 1 31.11 0 O4 GLA 601 A 1 HETATM 11 O O5 GLA . . . B 2 -37.012 -5.814 5.202 1 39.66 0 O5 GLA 601 A 1 HETATM 12 O O6 GLA . . . B 2 -33.845 -4.097 4.327 1 37.39 0 O6 GLA 601 A 1 # _model_server_stats.io_time_ms 49 _model_server_stats.parse_time_ms 11 _model_server_stats.create_model_time_ms 20 _model_server_stats.query_time_ms 313 _model_server_stats.encode_time_ms 3 _model_server_stats.element_count 12 #