data_8Z4W # _model_server_result.job_id 8Fl74aXIHhi9c6iAB0eTBw _model_server_result.datetime_utc '2025-07-05 01:01:58' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 8z4w # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"L","auth_seq_id":404}' # _entry.id 8Z4W # _exptl.entry_id 8Z4W _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 65.409 _entity.id 3 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'ZINC ION' _entity.pdbx_number_of_molecules 4 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 106.05 _cell.angle_beta 105.94 _cell.angle_gamma 105.14 _cell.entry_id 8Z4W _cell.length_a 58.232 _cell.length_b 75.613 _cell.length_c 88.35 _cell.Z_PDB 4 _cell.pdbx_unique_axis ? # _symmetry.entry_id 8Z4W _symmetry.cell_setting ? _symmetry.Int_Tables_number 1 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 1' # loop_ _pdbx_struct_assembly.method_details _pdbx_struct_assembly.oligomeric_details _pdbx_struct_assembly.oligomeric_count _pdbx_struct_assembly.details _pdbx_struct_assembly.id ? monomeric 1 author_defined_assembly 1 ? monomeric 1 author_defined_assembly 2 ? monomeric 1 author_defined_assembly 3 ? monomeric 1 author_defined_assembly 4 # loop_ _pdbx_struct_assembly_gen.asym_id_list _pdbx_struct_assembly_gen.assembly_id _pdbx_struct_assembly_gen.oper_expression A,E,F 1 1 B,G,H,O 2 1 C,I,J,K,L,P 3 1 D,M,N,Q 4 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 3 F N N ? 3 H N N ? 3 L N N ? 3 N N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order covale ? covale1 A SG CYS 112 A CYS 111 1_555 E C1 A1D7X . A A1D7X 401 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.95 ? covale ? covale2 B SG CYS 112 B CYS 111 1_555 G C1 A1D7X . B A1D7X 401 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.869 ? covale ? covale3 C SG CYS 112 C CYS 111 1_555 I C1 A1D7X . C A1D7X 401 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.6 ? covale ? covale4 D SG CYS 112 D CYS 111 1_555 M C1 A1D7X . D A1D7X 401 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.897 ? metalc ? metalc1 A SG CYS 190 A CYS 189 1_555 F ZN ZN . A ZN 402 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.221 ? metalc ? metalc2 A SG CYS 193 A CYS 192 1_555 F ZN ZN . A ZN 402 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.601 ? metalc ? metalc3 A SG CYS 225 A CYS 224 1_555 F ZN ZN . A ZN 402 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.606 ? metalc ? metalc4 A SG CYS 227 A CYS 226 1_555 F ZN ZN . A ZN 402 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.305 ? metalc ? metalc5 B SG CYS 190 B CYS 189 1_555 H ZN ZN . B ZN 402 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.717 ? metalc ? metalc6 B SG CYS 193 B CYS 192 1_555 H ZN ZN . B ZN 402 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.384 ? metalc ? metalc7 B SG CYS 225 B CYS 224 1_555 H ZN ZN . B ZN 402 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.593 ? metalc ? metalc8 B SG CYS 227 B CYS 226 1_555 H ZN ZN . B ZN 402 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.725 ? metalc ? metalc9 C SG CYS 190 C CYS 189 1_555 L ZN ZN . C ZN 404 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.606 ? metalc ? metalc10 C SG CYS 193 C CYS 192 1_555 L ZN ZN . C ZN 404 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.458 ? metalc ? metalc11 C SG CYS 225 C CYS 224 1_555 L ZN ZN . C ZN 404 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.415 ? metalc ? metalc12 C SG CYS 227 C CYS 226 1_555 L ZN ZN . C ZN 404 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.458 ? metalc ? metalc13 D SG CYS 190 D CYS 189 1_555 N ZN ZN . D ZN 402 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.315 ? metalc ? metalc14 D SG CYS 225 D CYS 224 1_555 N ZN ZN . D ZN 402 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.417 ? metalc ? metalc15 D SG CYS 227 D CYS 226 1_555 N ZN ZN . D ZN 402 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.032 ? # _chem_comp.formula 'Zn 2' _chem_comp.formula_weight 65.409 _chem_comp.id ZN _chem_comp.mon_nstd_flag . _chem_comp.name 'ZINC ION' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # _atom_sites.entry_id 8Z4W _atom_sites.fract_transf_matrix[1][1] 0.017173 _atom_sites.fract_transf_matrix[1][2] 0.004648 _atom_sites.fract_transf_matrix[1][3] 0.007173 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.013701 _atom_sites.fract_transf_matrix[2][3] 0.005545 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.012699 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code E 2 A1D7X A 1 401 401 A1D7X LIG . F 3 ZN A 1 402 1 ZN ZN . G 2 A1D7X B 1 401 401 A1D7X LIG . H 3 ZN B 1 402 2 ZN ZN . I 2 A1D7X C 1 401 401 A1D7X LIG . J 4 GOL C 1 402 501 GOL GOL . K 4 GOL C 1 403 601 GOL GOL . L 3 ZN C 1 404 3 ZN ZN . M 2 A1D7X D 1 401 401 A1D7X LIG . N 3 ZN D 1 402 4 ZN ZN . O 5 HOH B 1 501 6 HOH HOH . O 5 HOH B 2 502 5 HOH HOH . P 5 HOH C 1 501 4 HOH HOH . P 5 HOH C 2 502 10 HOH HOH . P 5 HOH C 3 503 1 HOH HOH . Q 5 HOH D 1 501 2 HOH HOH . Q 5 HOH D 2 502 3 HOH HOH . Q 5 HOH D 3 503 11 HOH HOH . Q 5 HOH D 4 504 12 HOH HOH . Q 5 HOH D 5 505 7 HOH HOH . Q 5 HOH D 6 506 9 HOH HOH . Q 5 HOH D 7 507 8 HOH HOH . Q 5 HOH D 8 508 13 HOH HOH . # _atom_site.group_PDB HETATM _atom_site.id 1 _atom_site.type_symbol ZN _atom_site.label_atom_id ZN _atom_site.label_comp_id ZN _atom_site.label_seq_id . _atom_site.label_alt_id . _atom_site.pdbx_PDB_ins_code . _atom_site.label_asym_id L _atom_site.label_entity_id 3 _atom_site.Cartn_x 10.257 _atom_site.Cartn_y 61.94 _atom_site.Cartn_z 16.759 _atom_site.occupancy 1 _atom_site.B_iso_or_equiv 56.86 _atom_site.pdbx_formal_charge ? _atom_site.auth_atom_id ZN _atom_site.auth_comp_id ZN _atom_site.auth_seq_id 404 _atom_site.auth_asym_id C _atom_site.pdbx_PDB_model_num 1 # _model_server_stats.io_time_ms 61 _model_server_stats.parse_time_ms 13 _model_server_stats.create_model_time_ms 18 _model_server_stats.query_time_ms 358 _model_server_stats.encode_time_ms 4 _model_server_stats.element_count 1 #