data_8Z54
#
_model_server_result.job_id            -V8M-Gp5XcNpKQ0mpAmqww 
_model_server_result.datetime_utc      '2024-11-29 08:40:21' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          8z54 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"D","auth_seq_id":402}' 
#
_entry.id    8Z54 
#
_exptl.entry_id    8Z54 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              78.133 
_entity.id                          4 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            'DIMETHYL SULFOXIDE' 
_entity.pdbx_number_of_molecules    2 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          90 
_cell.angle_gamma         90 
_cell.entry_id            8Z54 
_cell.length_a            45.202 
_cell.length_b            72.612 
_cell.length_c            162.407 
_cell.Z_PDB               8 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 8Z54 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        20 
_symmetry.space_group_name_Hall    ? 
_symmetry.space_group_name_H-M     'C 2 2 21' 
#
_pdbx_struct_assembly.method_details        ? 
_pdbx_struct_assembly.oligomeric_details    dimeric 
_pdbx_struct_assembly.oligomeric_count      2 
_pdbx_struct_assembly.details               author_defined_assembly 
_pdbx_struct_assembly.id                    1 
#
_pdbx_struct_assembly_gen.asym_id_list       A,B,C,D,E,F,G 
_pdbx_struct_assembly_gen.assembly_id        1 
_pdbx_struct_assembly_gen.oper_expression    1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    x,y,z 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
loop_
_struct_asym.details
_struct_asym.entity_id
_struct_asym.id
_struct_asym.pdbx_modified
_struct_asym.pdbx_blank_PDB_chainid_flag
? 4 D N N 
? 4 E N N 
#
loop_
_struct_conn.conn_type_id
_struct_conn.details
_struct_conn.id
_struct_conn.ptnr1_label_asym_id
_struct_conn.ptnr1_label_atom_id
_struct_conn.ptnr1_label_comp_id
_struct_conn.ptnr1_label_seq_id
_struct_conn.ptnr1_auth_asym_id
_struct_conn.ptnr1_auth_comp_id
_struct_conn.ptnr1_auth_seq_id
_struct_conn.ptnr1_symmetry
_struct_conn.ptnr2_label_asym_id
_struct_conn.ptnr2_label_atom_id
_struct_conn.ptnr2_label_comp_id
_struct_conn.ptnr2_label_seq_id
_struct_conn.ptnr2_auth_asym_id
_struct_conn.ptnr2_auth_comp_id
_struct_conn.ptnr2_auth_seq_id
_struct_conn.ptnr2_symmetry
_struct_conn.pdbx_ptnr1_PDB_ins_code
_struct_conn.pdbx_ptnr1_label_alt_id
_struct_conn.pdbx_ptnr1_standard_comp_id
_struct_conn.pdbx_ptnr2_PDB_ins_code
_struct_conn.pdbx_ptnr2_label_alt_id
_struct_conn.pdbx_ptnr3_PDB_ins_code
_struct_conn.pdbx_ptnr3_label_alt_id
_struct_conn.pdbx_ptnr3_label_asym_id
_struct_conn.pdbx_ptnr3_label_atom_id
_struct_conn.pdbx_ptnr3_label_comp_id
_struct_conn.pdbx_ptnr3_label_seq_id
_struct_conn.pdbx_PDB_id
_struct_conn.pdbx_dist_value
_struct_conn.pdbx_value_order
covale ? covale1 B C SER 6 B SER 121 1_555 B N SLL 7 B SLL 122 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.322 ? 
covale ? covale2 B C SLL 7 B SLL 122 1_555 B N GLN 8 B GLN 123 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.339 ? 
metalc ? metalc1 A SG CYS 138 A CYS 166 1_555 C ZN ZN . A ZN 401 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.373 ? 
metalc ? metalc2 A SG CYS 141 A CYS 169 1_555 C ZN ZN . A ZN 401 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.302 ? 
metalc ? metalc3 A SG CYS 179 A CYS 207 1_555 C ZN ZN . A ZN 401 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.301 ? 
metalc ? metalc4 A SG CYS 184 A CYS 212 1_555 C ZN ZN . A ZN 401 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.336 ? 
#
_chem_comp.formula           'C2 H6 O S' 
_chem_comp.formula_weight    78.133 
_chem_comp.id                DMS 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              'DIMETHYL SULFOXIDE' 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     ? 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
S O DMS doub 83 n n 
S C1 DMS sing 84 n n 
S C2 DMS sing 85 n n 
C1 H11 DMS sing 86 n n 
C1 H12 DMS sing 87 n n 
C1 H13 DMS sing 88 n n 
C2 H21 DMS sing 89 n n 
C2 H22 DMS sing 90 n n 
C2 H23 DMS sing 91 n n 
#
_atom_sites.entry_id                     8Z54 
_atom_sites.fract_transf_matrix[1][1]    0.022123 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.013772 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.006157 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
C 3 ZN A 1 401 401 ZN ZN . 
D 4 DMS A 1 402 402 DMS DMS . 
E 4 DMS A 1 403 403 DMS DMS . 
F 5 HOH A 1 501 1044 HOH HOH . 
F 5 HOH A 2 502 1072 HOH HOH . 
F 5 HOH A 3 503 210 HOH HOH . 
F 5 HOH A 4 504 221 HOH HOH . 
F 5 HOH A 5 505 725 HOH HOH . 
F 5 HOH A 6 506 206 HOH HOH . 
F 5 HOH A 7 507 209 HOH HOH . 
F 5 HOH A 8 508 1053 HOH HOH . 
F 5 HOH A 9 509 133 HOH HOH . 
F 5 HOH A 10 510 812 HOH HOH . 
F 5 HOH A 11 511 839 HOH HOH . 
F 5 HOH A 12 512 126 HOH HOH . 
F 5 HOH A 13 513 1025 HOH HOH . 
F 5 HOH A 14 514 241 HOH HOH . 
F 5 HOH A 15 515 25 HOH HOH . 
F 5 HOH A 16 516 172 HOH HOH . 
F 5 HOH A 17 517 32 HOH HOH . 
F 5 HOH A 18 518 100 HOH HOH . 
F 5 HOH A 19 519 22 HOH HOH . 
F 5 HOH A 20 520 188 HOH HOH . 
F 5 HOH A 21 521 68 HOH HOH . 
F 5 HOH A 22 522 990 HOH HOH . 
F 5 HOH A 23 523 932 HOH HOH . 
F 5 HOH A 24 524 44 HOH HOH . 
F 5 HOH A 25 525 111 HOH HOH . 
F 5 HOH A 26 526 134 HOH HOH . 
F 5 HOH A 27 527 42 HOH HOH . 
F 5 HOH A 28 528 112 HOH HOH . 
F 5 HOH A 29 529 43 HOH HOH . 
F 5 HOH A 30 530 12 HOH HOH . 
F 5 HOH A 31 531 93 HOH HOH . 
F 5 HOH A 32 532 354 HOH HOH . 
F 5 HOH A 33 533 501 HOH HOH . 
F 5 HOH A 34 534 23 HOH HOH . 
F 5 HOH A 35 535 236 HOH HOH . 
F 5 HOH A 36 536 123 HOH HOH . 
F 5 HOH A 37 537 14 HOH HOH . 
F 5 HOH A 38 538 125 HOH HOH . 
F 5 HOH A 39 539 98 HOH HOH . 
F 5 HOH A 40 540 137 HOH HOH . 
F 5 HOH A 41 541 2 HOH HOH . 
F 5 HOH A 42 542 51 HOH HOH . 
F 5 HOH A 43 543 28 HOH HOH . 
F 5 HOH A 44 544 41 HOH HOH . 
F 5 HOH A 45 545 13 HOH HOH . 
F 5 HOH A 46 546 33 HOH HOH . 
F 5 HOH A 47 547 66 HOH HOH . 
F 5 HOH A 48 548 936 HOH HOH . 
F 5 HOH A 49 549 60 HOH HOH . 
F 5 HOH A 50 550 87 HOH HOH . 
F 5 HOH A 51 551 989 HOH HOH . 
F 5 HOH A 52 552 70 HOH HOH . 
F 5 HOH A 53 553 40 HOH HOH . 
F 5 HOH A 54 554 813 HOH HOH . 
F 5 HOH A 55 555 48 HOH HOH . 
F 5 HOH A 56 556 182 HOH HOH . 
F 5 HOH A 57 557 819 HOH HOH . 
F 5 HOH A 58 558 3 HOH HOH . 
F 5 HOH A 59 559 205 HOH HOH . 
F 5 HOH A 60 560 74 HOH HOH . 
F 5 HOH A 61 561 97 HOH HOH . 
F 5 HOH A 62 562 122 HOH HOH . 
F 5 HOH A 63 563 85 HOH HOH . 
F 5 HOH A 64 564 56 HOH HOH . 
F 5 HOH A 65 565 81 HOH HOH . 
F 5 HOH A 66 566 69 HOH HOH . 
F 5 HOH A 67 567 65 HOH HOH . 
F 5 HOH A 68 568 49 HOH HOH . 
F 5 HOH A 69 569 191 HOH HOH . 
F 5 HOH A 70 570 207 HOH HOH . 
F 5 HOH A 71 571 178 HOH HOH . 
F 5 HOH A 72 572 116 HOH HOH . 
F 5 HOH A 73 573 4 HOH HOH . 
F 5 HOH A 74 574 15 HOH HOH . 
F 5 HOH A 75 575 86 HOH HOH . 
F 5 HOH A 76 576 434 HOH HOH . 
F 5 HOH A 77 577 218 HOH HOH . 
F 5 HOH A 78 578 117 HOH HOH . 
F 5 HOH A 79 579 204 HOH HOH . 
F 5 HOH A 80 580 831 HOH HOH . 
F 5 HOH A 81 581 31 HOH HOH . 
F 5 HOH A 82 582 34 HOH HOH . 
F 5 HOH A 83 583 82 HOH HOH . 
F 5 HOH A 84 584 10 HOH HOH . 
F 5 HOH A 85 585 59 HOH HOH . 
F 5 HOH A 86 586 55 HOH HOH . 
F 5 HOH A 87 587 99 HOH HOH . 
F 5 HOH A 88 588 46 HOH HOH . 
F 5 HOH A 89 589 9 HOH HOH . 
F 5 HOH A 90 590 16 HOH HOH . 
F 5 HOH A 91 591 157 HOH HOH . 
F 5 HOH A 92 592 1 HOH HOH . 
F 5 HOH A 93 593 7 HOH HOH . 
F 5 HOH A 94 594 174 HOH HOH . 
F 5 HOH A 95 595 192 HOH HOH . 
F 5 HOH A 96 596 30 HOH HOH . 
F 5 HOH A 97 597 5 HOH HOH . 
F 5 HOH A 98 598 284 HOH HOH . 
F 5 HOH A 99 599 19 HOH HOH . 
F 5 HOH A 100 600 18 HOH HOH . 
F 5 HOH A 101 601 20 HOH HOH . 
F 5 HOH A 102 602 142 HOH HOH . 
F 5 HOH A 103 603 440 HOH HOH . 
F 5 HOH A 104 604 145 HOH HOH . 
F 5 HOH A 105 605 8 HOH HOH . 
F 5 HOH A 106 606 29 HOH HOH . 
F 5 HOH A 107 607 63 HOH HOH . 
F 5 HOH A 108 608 886 HOH HOH . 
F 5 HOH A 109 609 106 HOH HOH . 
F 5 HOH A 110 610 37 HOH HOH . 
F 5 HOH A 111 611 719 HOH HOH . 
F 5 HOH A 112 612 889 HOH HOH . 
F 5 HOH A 113 613 62 HOH HOH . 
F 5 HOH A 114 614 238 HOH HOH . 
F 5 HOH A 115 615 39 HOH HOH . 
F 5 HOH A 116 616 84 HOH HOH . 
F 5 HOH A 117 617 75 HOH HOH . 
F 5 HOH A 118 618 108 HOH HOH . 
F 5 HOH A 119 619 230 HOH HOH . 
F 5 HOH A 120 620 217 HOH HOH . 
F 5 HOH A 121 621 1147 HOH HOH . 
F 5 HOH A 122 622 64 HOH HOH . 
F 5 HOH A 123 623 24 HOH HOH . 
F 5 HOH A 124 624 214 HOH HOH . 
F 5 HOH A 125 625 36 HOH HOH . 
F 5 HOH A 126 626 21 HOH HOH . 
F 5 HOH A 127 627 90 HOH HOH . 
F 5 HOH A 128 628 17 HOH HOH . 
F 5 HOH A 129 629 102 HOH HOH . 
F 5 HOH A 130 630 1109 HOH HOH . 
F 5 HOH A 131 631 391 HOH HOH . 
F 5 HOH A 132 632 1004 HOH HOH . 
F 5 HOH A 133 633 6 HOH HOH . 
F 5 HOH A 134 634 71 HOH HOH . 
F 5 HOH A 135 635 57 HOH HOH . 
F 5 HOH A 136 636 723 HOH HOH . 
F 5 HOH A 137 637 95 HOH HOH . 
F 5 HOH A 138 638 61 HOH HOH . 
F 5 HOH A 139 639 955 HOH HOH . 
F 5 HOH A 140 640 822 HOH HOH . 
F 5 HOH A 141 641 901 HOH HOH . 
F 5 HOH A 142 642 91 HOH HOH . 
F 5 HOH A 143 643 76 HOH HOH . 
F 5 HOH A 144 644 121 HOH HOH . 
F 5 HOH A 145 645 193 HOH HOH . 
F 5 HOH A 146 646 128 HOH HOH . 
F 5 HOH A 147 647 79 HOH HOH . 
F 5 HOH A 148 648 173 HOH HOH . 
F 5 HOH A 149 649 54 HOH HOH . 
F 5 HOH A 150 650 190 HOH HOH . 
F 5 HOH A 151 651 841 HOH HOH . 
F 5 HOH A 152 652 937 HOH HOH . 
F 5 HOH A 153 653 838 HOH HOH . 
F 5 HOH A 154 654 73 HOH HOH . 
F 5 HOH A 155 655 844 HOH HOH . 
F 5 HOH A 156 656 175 HOH HOH . 
F 5 HOH A 157 657 537 HOH HOH . 
F 5 HOH A 158 658 58 HOH HOH . 
F 5 HOH A 159 659 129 HOH HOH . 
F 5 HOH A 160 660 96 HOH HOH . 
F 5 HOH A 161 661 35 HOH HOH . 
F 5 HOH A 162 662 856 HOH HOH . 
F 5 HOH A 163 663 119 HOH HOH . 
F 5 HOH A 164 664 310 HOH HOH . 
F 5 HOH A 165 665 11 HOH HOH . 
F 5 HOH A 166 666 821 HOH HOH . 
F 5 HOH A 167 667 319 HOH HOH . 
F 5 HOH A 168 668 159 HOH HOH . 
F 5 HOH A 169 669 460 HOH HOH . 
F 5 HOH A 170 670 879 HOH HOH . 
F 5 HOH A 171 671 589 HOH HOH . 
F 5 HOH A 172 672 67 HOH HOH . 
F 5 HOH A 173 673 109 HOH HOH . 
F 5 HOH A 174 674 703 HOH HOH . 
F 5 HOH A 175 675 975 HOH HOH . 
F 5 HOH A 176 676 962 HOH HOH . 
F 5 HOH A 177 677 252 HOH HOH . 
F 5 HOH A 178 678 120 HOH HOH . 
F 5 HOH A 179 679 607 HOH HOH . 
F 5 HOH A 180 680 245 HOH HOH . 
F 5 HOH A 181 681 739 HOH HOH . 
F 5 HOH A 182 682 135 HOH HOH . 
F 5 HOH A 183 683 986 HOH HOH . 
F 5 HOH A 184 684 94 HOH HOH . 
F 5 HOH A 185 685 417 HOH HOH . 
F 5 HOH A 186 686 845 HOH HOH . 
F 5 HOH A 187 687 892 HOH HOH . 
F 5 HOH A 188 688 38 HOH HOH . 
F 5 HOH A 189 689 101 HOH HOH . 
F 5 HOH A 190 690 195 HOH HOH . 
F 5 HOH A 191 691 196 HOH HOH . 
F 5 HOH A 192 692 52 HOH HOH . 
F 5 HOH A 193 693 189 HOH HOH . 
F 5 HOH A 194 694 136 HOH HOH . 
F 5 HOH A 195 695 50 HOH HOH . 
F 5 HOH A 196 696 714 HOH HOH . 
F 5 HOH A 197 697 443 HOH HOH . 
F 5 HOH A 198 698 146 HOH HOH . 
F 5 HOH A 199 699 809 HOH HOH . 
F 5 HOH A 200 700 131 HOH HOH . 
F 5 HOH A 201 701 27 HOH HOH . 
F 5 HOH A 202 702 1126 HOH HOH . 
F 5 HOH A 203 703 979 HOH HOH . 
F 5 HOH A 204 704 141 HOH HOH . 
F 5 HOH A 205 705 26 HOH HOH . 
F 5 HOH A 206 706 404 HOH HOH . 
F 5 HOH A 207 707 721 HOH HOH . 
F 5 HOH A 208 708 194 HOH HOH . 
F 5 HOH A 209 709 958 HOH HOH . 
F 5 HOH A 210 710 181 HOH HOH . 
F 5 HOH A 211 711 661 HOH HOH . 
F 5 HOH A 212 712 139 HOH HOH . 
F 5 HOH A 213 713 419 HOH HOH . 
F 5 HOH A 214 714 143 HOH HOH . 
F 5 HOH A 215 715 162 HOH HOH . 
F 5 HOH A 216 716 604 HOH HOH . 
F 5 HOH A 217 717 448 HOH HOH . 
F 5 HOH A 218 718 439 HOH HOH . 
F 5 HOH A 219 719 89 HOH HOH . 
F 5 HOH A 220 720 158 HOH HOH . 
G 5 HOH B 1 301 650 HOH HOH . 
G 5 HOH B 2 302 77 HOH HOH . 
G 5 HOH B 3 303 45 HOH HOH . 
G 5 HOH B 4 304 224 HOH HOH . 
G 5 HOH B 5 305 251 HOH HOH . 
G 5 HOH B 6 306 234 HOH HOH . 
G 5 HOH B 7 307 628 HOH HOH . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 S S DMS . . . D 4 31.41 18.595 70.057 1 44.95 ? S DMS 402 A 1 
HETATM 2 O O DMS . . . D 4 29.99 18.973 69.744 1 44.2 ? O DMS 402 A 1 
HETATM 3 C C1 DMS . . . D 4 32.819 19.716 69.943 1 31.59 ? C1 DMS 402 A 1 
HETATM 4 C C2 DMS . . . D 4 31.794 16.978 70.759 1 40.27 ? C2 DMS 402 A 1 
#
_model_server_stats.io_time_ms              10 
_model_server_stats.parse_time_ms           12 
_model_server_stats.create_model_time_ms    6 
_model_server_stats.query_time_ms           275 
_model_server_stats.encode_time_ms          5 
_model_server_stats.element_count           4 
#