data_8Z57
#
_model_server_result.job_id            m4w4necl7qJQ56cZ4xA4sw 
_model_server_result.datetime_utc      '2024-12-01 20:18:51' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          8z57 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"D","auth_seq_id":402}' 
#
_entry.id    8Z57 
#
_exptl.entry_id    8Z57 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              427.201 
_entity.id                          4 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            "ADENOSINE-5'-DIPHOSPHATE" 
_entity.pdbx_number_of_molecules    1 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          90 
_cell.angle_gamma         90 
_cell.entry_id            8Z57 
_cell.length_a            46.084 
_cell.length_b            73.043 
_cell.length_c            162.457 
_cell.Z_PDB               8 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 8Z57 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        20 
_symmetry.space_group_name_Hall    ? 
_symmetry.space_group_name_H-M     'C 2 2 21' 
#
_pdbx_struct_assembly.method_details        ? 
_pdbx_struct_assembly.oligomeric_details    dimeric 
_pdbx_struct_assembly.oligomeric_count      2 
_pdbx_struct_assembly.details               author_defined_assembly 
_pdbx_struct_assembly.id                    1 
#
_pdbx_struct_assembly_gen.asym_id_list       A,B,C,D,E,F 
_pdbx_struct_assembly_gen.assembly_id        1 
_pdbx_struct_assembly_gen.oper_expression    1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    x,y,z 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
_struct_asym.details                        ? 
_struct_asym.entity_id                      4 
_struct_asym.id                             D 
_struct_asym.pdbx_modified                  N 
_struct_asym.pdbx_blank_PDB_chainid_flag    N 
#
loop_
_struct_conn.conn_type_id
_struct_conn.details
_struct_conn.id
_struct_conn.ptnr1_label_asym_id
_struct_conn.ptnr1_label_atom_id
_struct_conn.ptnr1_label_comp_id
_struct_conn.ptnr1_label_seq_id
_struct_conn.ptnr1_auth_asym_id
_struct_conn.ptnr1_auth_comp_id
_struct_conn.ptnr1_auth_seq_id
_struct_conn.ptnr1_symmetry
_struct_conn.ptnr2_label_asym_id
_struct_conn.ptnr2_label_atom_id
_struct_conn.ptnr2_label_comp_id
_struct_conn.ptnr2_label_seq_id
_struct_conn.ptnr2_auth_asym_id
_struct_conn.ptnr2_auth_comp_id
_struct_conn.ptnr2_auth_seq_id
_struct_conn.ptnr2_symmetry
_struct_conn.pdbx_ptnr1_PDB_ins_code
_struct_conn.pdbx_ptnr1_label_alt_id
_struct_conn.pdbx_ptnr1_standard_comp_id
_struct_conn.pdbx_ptnr2_PDB_ins_code
_struct_conn.pdbx_ptnr2_label_alt_id
_struct_conn.pdbx_ptnr3_PDB_ins_code
_struct_conn.pdbx_ptnr3_label_alt_id
_struct_conn.pdbx_ptnr3_label_asym_id
_struct_conn.pdbx_ptnr3_label_atom_id
_struct_conn.pdbx_ptnr3_label_comp_id
_struct_conn.pdbx_ptnr3_label_seq_id
_struct_conn.pdbx_PDB_id
_struct_conn.pdbx_dist_value
_struct_conn.pdbx_value_order
covale ? covale1 B C SER 6 B SER 121 1_555 B N SLL 7 B SLL 122 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.337 ? 
covale ? covale2 B C SLL 7 B SLL 122 1_555 B N GLN 8 B GLN 123 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.335 ? 
metalc ? metalc1 A SG CYS 138 A CYS 166 1_555 C ZN ZN . A ZN 401 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.355 ? 
metalc ? metalc2 A SG CYS 141 A CYS 169 1_555 C ZN ZN . A ZN 401 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.257 ? 
metalc ? metalc3 A SG CYS 179 A CYS 207 1_555 C ZN ZN . A ZN 401 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.402 ? 
metalc ? metalc4 A SG CYS 184 A CYS 212 1_555 C ZN ZN . A ZN 401 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.25 ? 
#
_chem_comp.formula           'C10 H15 N5 O10 P2' 
_chem_comp.formula_weight    427.201 
_chem_comp.id                ADP 
_chem_comp.mon_nstd_flag     n 
_chem_comp.name              "ADENOSINE-5'-DIPHOSPHATE" 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     ? 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
PB O1B ADP doub 1 n n 
PB O2B ADP sing 2 n n 
PB O3B ADP sing 3 n n 
PB O3A ADP sing 4 n n 
O2B HOB2 ADP sing 5 n n 
O3B HOB3 ADP sing 6 n n 
PA O1A ADP doub 7 n n 
PA O2A ADP sing 8 n n 
PA O3A ADP sing 9 n n 
PA O5' ADP sing 10 n n 
O2A HOA2 ADP sing 11 n n 
O5' C5' ADP sing 12 n n 
C5' C4' ADP sing 13 n n 
C5' "H5'1" ADP sing 14 n n 
C5' "H5'2" ADP sing 15 n n 
C4' O4' ADP sing 16 n n 
C4' C3' ADP sing 17 n n 
C4' H4' ADP sing 18 n n 
O4' C1' ADP sing 19 n n 
C3' O3' ADP sing 20 n n 
C3' C2' ADP sing 21 n n 
C3' H3' ADP sing 22 n n 
O3' HO3' ADP sing 23 n n 
C2' O2' ADP sing 24 n n 
C2' C1' ADP sing 25 n n 
C2' H2' ADP sing 26 n n 
O2' HO2' ADP sing 27 n n 
C1' N9 ADP sing 28 n n 
C1' H1' ADP sing 29 n n 
N9 C8 ADP sing 30 n y 
N9 C4 ADP sing 31 n y 
C8 N7 ADP doub 32 n y 
C8 H8 ADP sing 33 n n 
N7 C5 ADP sing 34 n y 
C5 C6 ADP sing 35 n y 
C5 C4 ADP doub 36 n y 
C6 N6 ADP sing 37 n n 
C6 N1 ADP doub 38 n y 
N6 HN61 ADP sing 39 n n 
N6 HN62 ADP sing 40 n n 
N1 C2 ADP sing 41 n y 
C2 N3 ADP doub 42 n y 
C2 H2 ADP sing 43 n n 
N3 C4 ADP sing 44 n y 
#
_atom_sites.entry_id                     8Z57 
_atom_sites.fract_transf_matrix[1][1]    0.0217 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.013691 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.006155 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
C 3 ZN A 1 401 401 ZN ZN . 
D 4 ADP A 1 402 303 ADP NAD . 
E 5 HOH A 1 501 95 HOH HOH . 
E 5 HOH A 2 502 60 HOH HOH . 
E 5 HOH A 3 503 61 HOH HOH . 
E 5 HOH A 4 504 50 HOH HOH . 
E 5 HOH A 5 505 56 HOH HOH . 
E 5 HOH A 6 506 26 HOH HOH . 
E 5 HOH A 7 507 94 HOH HOH . 
E 5 HOH A 8 508 45 HOH HOH . 
E 5 HOH A 9 509 59 HOH HOH . 
E 5 HOH A 10 510 62 HOH HOH . 
E 5 HOH A 11 511 86 HOH HOH . 
E 5 HOH A 12 512 38 HOH HOH . 
E 5 HOH A 13 513 33 HOH HOH . 
E 5 HOH A 14 514 81 HOH HOH . 
E 5 HOH A 15 515 83 HOH HOH . 
E 5 HOH A 16 516 41 HOH HOH . 
E 5 HOH A 17 517 70 HOH HOH . 
E 5 HOH A 18 518 21 HOH HOH . 
E 5 HOH A 19 519 1 HOH HOH . 
E 5 HOH A 20 520 24 HOH HOH . 
E 5 HOH A 21 521 72 HOH HOH . 
E 5 HOH A 22 522 42 HOH HOH . 
E 5 HOH A 23 523 85 HOH HOH . 
E 5 HOH A 24 524 98 HOH HOH . 
E 5 HOH A 25 525 15 HOH HOH . 
E 5 HOH A 26 526 76 HOH HOH . 
E 5 HOH A 27 527 12 HOH HOH . 
E 5 HOH A 28 528 6 HOH HOH . 
E 5 HOH A 29 529 2 HOH HOH . 
E 5 HOH A 30 530 75 HOH HOH . 
E 5 HOH A 31 531 82 HOH HOH . 
E 5 HOH A 32 532 69 HOH HOH . 
E 5 HOH A 33 533 8 HOH HOH . 
E 5 HOH A 34 534 5 HOH HOH . 
E 5 HOH A 35 535 32 HOH HOH . 
E 5 HOH A 36 536 80 HOH HOH . 
E 5 HOH A 37 537 91 HOH HOH . 
E 5 HOH A 38 538 3 HOH HOH . 
E 5 HOH A 39 539 7 HOH HOH . 
E 5 HOH A 40 540 28 HOH HOH . 
E 5 HOH A 41 541 19 HOH HOH . 
E 5 HOH A 42 542 53 HOH HOH . 
E 5 HOH A 43 543 78 HOH HOH . 
E 5 HOH A 44 544 89 HOH HOH . 
E 5 HOH A 45 545 67 HOH HOH . 
E 5 HOH A 46 546 10 HOH HOH . 
E 5 HOH A 47 547 55 HOH HOH . 
E 5 HOH A 48 548 48 HOH HOH . 
E 5 HOH A 49 549 16 HOH HOH . 
E 5 HOH A 50 550 14 HOH HOH . 
E 5 HOH A 51 551 37 HOH HOH . 
E 5 HOH A 52 552 31 HOH HOH . 
E 5 HOH A 53 553 77 HOH HOH . 
E 5 HOH A 54 554 79 HOH HOH . 
E 5 HOH A 55 555 52 HOH HOH . 
E 5 HOH A 56 556 71 HOH HOH . 
E 5 HOH A 57 557 22 HOH HOH . 
E 5 HOH A 58 558 54 HOH HOH . 
E 5 HOH A 59 559 11 HOH HOH . 
E 5 HOH A 60 560 73 HOH HOH . 
E 5 HOH A 61 561 29 HOH HOH . 
E 5 HOH A 62 562 34 HOH HOH . 
E 5 HOH A 63 563 17 HOH HOH . 
E 5 HOH A 64 564 74 HOH HOH . 
E 5 HOH A 65 565 27 HOH HOH . 
E 5 HOH A 66 566 18 HOH HOH . 
E 5 HOH A 67 567 30 HOH HOH . 
E 5 HOH A 68 568 57 HOH HOH . 
E 5 HOH A 69 569 47 HOH HOH . 
E 5 HOH A 70 570 49 HOH HOH . 
E 5 HOH A 71 571 9 HOH HOH . 
E 5 HOH A 72 572 13 HOH HOH . 
E 5 HOH A 73 573 87 HOH HOH . 
E 5 HOH A 74 574 44 HOH HOH . 
E 5 HOH A 75 575 23 HOH HOH . 
E 5 HOH A 76 576 58 HOH HOH . 
E 5 HOH A 77 577 4 HOH HOH . 
E 5 HOH A 78 578 39 HOH HOH . 
E 5 HOH A 79 579 51 HOH HOH . 
E 5 HOH A 80 580 63 HOH HOH . 
E 5 HOH A 81 581 84 HOH HOH . 
E 5 HOH A 82 582 90 HOH HOH . 
E 5 HOH A 83 583 35 HOH HOH . 
E 5 HOH A 84 584 64 HOH HOH . 
E 5 HOH A 85 585 68 HOH HOH . 
E 5 HOH A 86 586 36 HOH HOH . 
E 5 HOH A 87 587 43 HOH HOH . 
E 5 HOH A 88 588 40 HOH HOH . 
E 5 HOH A 89 589 66 HOH HOH . 
E 5 HOH A 90 590 46 HOH HOH . 
E 5 HOH A 91 591 99 HOH HOH . 
E 5 HOH A 92 592 25 HOH HOH . 
E 5 HOH A 93 593 20 HOH HOH . 
E 5 HOH A 94 594 93 HOH HOH . 
E 5 HOH A 95 595 65 HOH HOH . 
E 5 HOH A 96 596 96 HOH HOH . 
E 5 HOH A 97 597 92 HOH HOH . 
F 5 HOH B 1 301 97 HOH HOH . 
F 5 HOH B 2 302 88 HOH HOH . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 P PB ADP . . . D 4 30.18 -1.027 55.444 1 90.62 ? PB ADP 402 A 1 
HETATM 2 O O1B ADP . . . D 4 30.033 -0.633 54.025 1 110.96 ? O1B ADP 402 A 1 
HETATM 3 O O2B ADP . . . D 4 29.878 -0.042 56.503 1 67.33 ? O2B ADP 402 A 1 
HETATM 4 O O3B ADP . . . D 4 29.291 -2.344 55.728 1 63.54 ? O3B ADP 402 A 1 
HETATM 5 P PA ADP . . . D 4 32.474 -2.748 54.907 1 70.74 ? PA ADP 402 A 1 
HETATM 6 O O1A ADP . . . D 4 31.526 -3.418 53.982 1 100.64 ? O1A ADP 402 A 1 
HETATM 7 O O2A ADP . . . D 4 33.242 -3.567 55.881 1 78.7 ? O2A ADP 402 A 1 
HETATM 8 O O3A ADP . . . D 4 31.717 -1.534 55.706 1 112.5 ? O3A ADP 402 A 1 
HETATM 9 O O5' ADP . . . D 4 33.543 -1.936 54.001 1 118.56 ? O5' ADP 402 A 1 
HETATM 10 C C5' ADP . . . D 4 34.463 -1.007 54.591 1 73.95 ? C5' ADP 402 A 1 
HETATM 11 C C4' ADP . . . D 4 34.612 0.207 53.67 1 64.3 ? C4' ADP 402 A 1 
HETATM 12 O O4' ADP . . . D 4 35.301 1.235 54.446 1 61.72 ? O4' ADP 402 A 1 
HETATM 13 C C3' ADP . . . D 4 35.548 -0.096 52.492 1 62.6 ? C3' ADP 402 A 1 
HETATM 14 O O3' ADP . . . D 4 35.412 0.918 51.466 1 49.08 ? O3' ADP 402 A 1 
HETATM 15 C C2' ADP . . . D 4 36.865 0.069 53.205 1 62.67 ? C2' ADP 402 A 1 
HETATM 16 O O2' ADP . . . D 4 37.976 0.146 52.268 1 56.68 ? O2' ADP 402 A 1 
HETATM 17 C C1' ADP . . . D 4 36.584 1.425 53.813 1 62.96 ? C1' ADP 402 A 1 
HETATM 18 N N9 ADP . . . D 4 37.593 1.828 54.838 1 61.33 ? N9 ADP 402 A 1 
HETATM 19 C C8 ADP . . . D 4 38.333 1.013 55.591 1 73.73 ? C8 ADP 402 A 1 
HETATM 20 N N7 ADP . . . D 4 39.098 1.763 56.383 1 62.82 ? N7 ADP 402 A 1 
HETATM 21 C C5 ADP . . . D 4 38.823 3.042 56.125 1 101.7 ? C5 ADP 402 A 1 
HETATM 22 C C6 ADP . . . D 4 39.309 4.169 56.646 1 90.67 ? C6 ADP 402 A 1 
HETATM 23 N N6 ADP . . . D 4 40.237 4.02 57.586 1 70.58 ? N6 ADP 402 A 1 
HETATM 24 N N1 ADP . . . D 4 38.891 5.379 56.243 1 78.69 ? N1 ADP 402 A 1 
HETATM 25 C C2 ADP . . . D 4 37.917 5.455 55.241 1 68.03 ? C2 ADP 402 A 1 
HETATM 26 N N3 ADP . . . D 4 37.42 4.257 54.711 1 65.12 ? N3 ADP 402 A 1 
HETATM 27 C C4 ADP . . . D 4 37.888 3.083 55.169 1 56.74 ? C4 ADP 402 A 1 
#
_model_server_stats.io_time_ms              13 
_model_server_stats.parse_time_ms           14 
_model_server_stats.create_model_time_ms    3 
_model_server_stats.query_time_ms           282 
_model_server_stats.encode_time_ms          4 
_model_server_stats.element_count           27 
#