data_8Z5D # _model_server_result.job_id jqDPSLtbNa3-pRf5g3Z5Zg _model_server_result.datetime_utc '2024-10-16 16:18:42' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 8z5d # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"E","auth_seq_id":501}' # _entry.id 8Z5D # _exptl.entry_id 8Z5D _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 116.158 _entity.id 3 _entity.src_method man _entity.type non-polymer _entity.pdbx_description 'HEXANOIC ACID' _entity.pdbx_number_of_molecules 2 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 113.33 _cell.angle_gamma 90 _cell.entry_id 8Z5D _cell.length_a 57.318 _cell.length_b 150.888 _cell.length_c 72.269 _cell.Z_PDB 4 _cell.pdbx_unique_axis ? # _symmetry.entry_id 8Z5D _symmetry.cell_setting ? _symmetry.Int_Tables_number 4 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 1 21 1' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details tetrameric _pdbx_struct_assembly.oligomeric_count 4 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J,K,L _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 3 E N N ? 3 F N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order covale ? covale1 A SG CYS 167 A CYS 167 1_555 E C 6NA . A 6NA 501 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.769 ? covale ? covale2 B SG CYS 167 B CYS 167 1_555 F C 6NA . B 6NA 501 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.768 ? covale ? covale3 C OG SER 44 C SER 36 1_555 G P PN7 . C PN7 101 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.582 ? covale ? covale4 D OG SER 44 D SER 36 1_555 H P PN7 . D PN7 101 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.577 ? # _chem_comp.formula 'C6 H12 O2' _chem_comp.formula_weight 116.158 _chem_comp.id 6NA _chem_comp.mon_nstd_flag . _chem_comp.name 'HEXANOIC ACID' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag CA C 6NA sing 1 n n CA CB 6NA sing 2 n n CA HAC1 6NA sing 3 n n CA HAC2 6NA sing 4 n n C O 6NA doub 5 n n C OXT 6NA sing 6 n n CB CG 6NA sing 7 n n CB HBC1 6NA sing 8 n n CB HBC2 6NA sing 9 n n CG CD 6NA sing 10 n n CG HGC1 6NA sing 11 n n CG HGC2 6NA sing 12 n n CD C6 6NA sing 13 n n CD HDC1 6NA sing 14 n n CD HDC2 6NA sing 15 n n C6 H6C1 6NA sing 16 n n C6 H6C2 6NA sing 17 n n C6 H6C3 6NA sing 18 n n OXT HXT 6NA sing 19 n n # _atom_sites.entry_id 8Z5D _atom_sites.fract_transf_matrix[1][1] 0.017447 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0.007524 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.006627 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.015069 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code E 3 6NA A 1 501 167 6NA C06 . F 3 6NA B 1 501 167 6NA C06 . G 4 PN7 C 1 101 36 PN7 PSR . H 4 PN7 D 1 101 36 PN7 PSR . I 5 HOH A 1 601 92 HOH HOH . I 5 HOH A 2 602 87 HOH HOH . I 5 HOH A 3 603 97 HOH HOH . I 5 HOH A 4 604 22 HOH HOH . I 5 HOH A 5 605 21 HOH HOH . I 5 HOH A 6 606 28 HOH HOH . I 5 HOH A 7 607 63 HOH HOH . I 5 HOH A 8 608 67 HOH HOH . I 5 HOH A 9 609 45 HOH HOH . I 5 HOH A 10 610 31 HOH HOH . I 5 HOH A 11 611 88 HOH HOH . I 5 HOH A 12 612 90 HOH HOH . I 5 HOH A 13 613 85 HOH HOH . I 5 HOH A 14 614 20 HOH HOH . I 5 HOH A 15 615 42 HOH HOH . I 5 HOH A 16 616 7 HOH HOH . I 5 HOH A 17 617 18 HOH HOH . I 5 HOH A 18 618 94 HOH HOH . I 5 HOH A 19 619 86 HOH HOH . I 5 HOH A 20 620 52 HOH HOH . I 5 HOH A 21 621 81 HOH HOH . I 5 HOH A 22 622 89 HOH HOH . J 5 HOH B 1 601 98 HOH HOH . J 5 HOH B 2 602 19 HOH HOH . J 5 HOH B 3 603 100 HOH HOH . J 5 HOH B 4 604 72 HOH HOH . J 5 HOH B 5 605 76 HOH HOH . J 5 HOH B 6 606 96 HOH HOH . J 5 HOH B 7 607 103 HOH HOH . J 5 HOH B 8 608 102 HOH HOH . J 5 HOH B 9 609 54 HOH HOH . J 5 HOH B 10 610 73 HOH HOH . J 5 HOH B 11 611 35 HOH HOH . J 5 HOH B 12 612 46 HOH HOH . J 5 HOH B 13 613 57 HOH HOH . J 5 HOH B 14 614 13 HOH HOH . J 5 HOH B 15 615 34 HOH HOH . J 5 HOH B 16 616 78 HOH HOH . J 5 HOH B 17 617 93 HOH HOH . J 5 HOH B 18 618 99 HOH HOH . J 5 HOH B 19 619 55 HOH HOH . J 5 HOH B 20 620 60 HOH HOH . J 5 HOH B 21 621 29 HOH HOH . J 5 HOH B 22 622 79 HOH HOH . J 5 HOH B 23 623 59 HOH HOH . J 5 HOH B 24 624 101 HOH HOH . J 5 HOH B 25 625 49 HOH HOH . K 5 HOH C 1 201 32 HOH HOH . L 5 HOH D 1 201 53 HOH HOH . L 5 HOH D 2 202 11 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C CA 6NA . . . E 3 -10.739 -8.021 37.107 1 23.57 ? CA 6NA 501 A 1 HETATM 2 C C 6NA . . . E 3 -9.27 -7.913 37.428 1 26.45 ? C 6NA 501 A 1 HETATM 3 O O 6NA . . . E 3 -8.419 -8.549 36.855 1 29.54 ? O 6NA 501 A 1 HETATM 4 C CB 6NA . . . E 3 -11.033 -7.536 35.711 1 25.43 ? CB 6NA 501 A 1 HETATM 5 C CG 6NA . . . E 3 -10.741 -6.061 35.547 1 18.78 ? CG 6NA 501 A 1 HETATM 6 C CD 6NA . . . E 3 -11.959 -5.17 35.443 1 11.97 ? CD 6NA 501 A 1 HETATM 7 C C6 6NA . . . E 3 -11.621 -3.703 35.553 1 19.47 ? C6 6NA 501 A 1 # _model_server_stats.io_time_ms 10 _model_server_stats.parse_time_ms 20 _model_server_stats.create_model_time_ms 28 _model_server_stats.query_time_ms 278 _model_server_stats.encode_time_ms 4 _model_server_stats.element_count 7 #