data_8Z97 # _model_server_result.job_id wRxcgi9JGqMK16iIX0nayw _model_server_result.datetime_utc '2025-02-22 19:48:03' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 8z97 # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"H","auth_seq_id":101}' # _entry.id 8Z97 # _exptl.entry_id 8Z97 _exptl.method 'ELECTRON MICROSCOPY' # _entity.details ? _entity.formula_weight 801.468 _entity.id 7 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description "7-METHYL-GUANOSINE-5'-TRIPHOSPHATE-5'-(2'-O-METHYL)-ADENOSINE" _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 8Z97 _cell.length_a 1 _cell.length_b 1 _cell.length_c 1 _cell.Z_PDB ? _cell.pdbx_unique_axis ? # _symmetry.entry_id 8Z97 _symmetry.cell_setting ? _symmetry.Int_Tables_number 1 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 1' # _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details heptameric _pdbx_struct_assembly.oligomeric_count 7 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 7 _struct_asym.id H _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order covale ? covale1 G P G 1 G G 2 1_555 H O16 V9G . G V9G 101 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.558 ? hydrog 'A-A MISPAIR' hydrog1 D N6 A 1 D A 1 1_555 D N3 A 10 D A 10 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog2 D N1 G 2 D G 2 1_555 D N3 C 9 D C 9 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog3 D N2 G 2 D G 2 1_555 D O2 C 9 D C 9 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog4 D O6 G 2 D G 2 1_555 D N4 C 9 D C 9 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog5 D N1 A 3 D A 3 1_555 D N3 U 8 D U 8 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog6 D N6 A 3 D A 3 1_555 D O4 U 8 D U 8 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog 'G-A MISPAIR' hydrog7 D N3 G 4 D G 4 1_555 D N6 A 7 D A 7 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog8 F N3 U 8 F U 8 1_555 G N1 A 9 G A 10 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog9 F O4 U 8 F U 8 1_555 G N6 A 9 G A 10 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog10 F N1 G 9 F G 9 1_555 G N3 C 8 G C 9 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog11 F N2 G 9 F G 9 1_555 G O2 C 8 G C 9 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog12 F O6 G 9 F G 9 1_555 G N4 C 8 G C 9 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog13 F N3 U 10 F U 10 1_555 G N1 A 7 G A 8 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog14 F O4 U 10 F U 10 1_555 G N6 A 7 G A 8 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog15 F N3 U 11 F U 11 1_555 G N1 A 6 G A 7 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog16 F O4 U 11 F U 11 1_555 G N6 A 6 G A 7 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog17 F N3 U 12 F U 12 1_555 G N1 A 5 G A 6 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog18 F O4 U 12 F U 12 1_555 G N6 A 5 G A 6 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog19 F N3 U 13 F U 13 1_555 G N1 A 4 G A 5 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog20 F O4 U 13 F U 13 1_555 G N6 A 4 G A 5 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog21 F N3 U 14 F U 14 1_555 G N1 A 3 G A 4 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog22 F O4 U 14 F U 14 1_555 G N6 A 3 G A 4 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog23 F N1 G 15 F G 15 1_555 G N3 C 2 G C 3 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog24 F N2 G 15 F G 15 1_555 G O2 C 2 G C 3 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog25 F O6 G 15 F G 15 1_555 G N4 C 2 G C 3 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog26 F N3 C 16 F C 16 1_555 G N1 G 1 G G 2 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog27 F N4 C 16 F C 16 1_555 G O6 G 1 G G 2 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog28 F O2 C 16 F C 16 1_555 G N2 G 1 G G 2 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? # _chem_comp.formula 'C22 H32 N10 O17 P3' _chem_comp.formula_weight 801.468 _chem_comp.id V9G _chem_comp.mon_nstd_flag . _chem_comp.name "7-METHYL-GUANOSINE-5'-TRIPHOSPHATE-5'-(2'-O-METHYL)-ADENOSINE" _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C22 O17 V9G sing 506 n n O17 C15 V9G sing 507 n n O16 C14 V9G sing 508 n n C15 C14 V9G sing 509 n n C15 C16 V9G sing 510 n n C14 C13 V9G sing 511 n n C16 O15 V9G sing 512 n n C16 N6 V9G sing 513 n n C13 O15 V9G sing 514 n n C13 C12 V9G sing 515 n n N10 C20 V9G doub 516 n y N10 C21 V9G sing 517 n y C20 N9 V9G sing 518 n y C21 N6 V9G sing 519 n y C21 C18 V9G doub 520 n y C12 O14 V9G sing 521 n n N6 C17 V9G sing 522 n y N9 C19 V9G doub 523 n y O14 P3 V9G sing 524 n n C17 N7 V9G doub 525 n y C18 C19 V9G sing 526 n y C18 N7 V9G sing 527 n y C19 N8 V9G sing 528 n n O13 P3 V9G doub 529 n n P3 O11 V9G sing 530 n n P3 O12 V9G sing 531 n n O11 P2 V9G sing 532 n n O10 P2 V9G doub 533 n n P2 O7 V9G sing 534 n n P2 O9 V9G sing 535 n n O7 P1 V9G sing 536 n n O5 P1 V9G doub 537 n n O6 P1 V9G sing 538 n n P1 O8 V9G sing 539 n n C3 N2 V9G sing 540 n n O8 C11 V9G sing 541 n n N2 C4 V9G sing 542 n y N2 C2 V9G sing 543 n y O1 C1 V9G doub 544 n n C11 C10 V9G sing 545 n n C4 N3 V9G doub 546 n y C2 C1 V9G sing 547 n n C2 C5 V9G doub 548 n y O2 C9 V9G sing 549 n n C1 N5 V9G sing 550 n n C9 C10 V9G sing 551 n n C9 C8 V9G sing 552 n n C10 O3 V9G sing 553 n n N3 C5 V9G sing 554 n y N3 C7 V9G sing 555 n n O3 C7 V9G sing 556 n n C5 N4 V9G sing 557 n n N5 C6 V9G sing 558 n n C8 C7 V9G sing 559 n n C8 O4 V9G sing 560 n n N4 C6 V9G doub 561 n n C6 N1 V9G sing 562 n n C3 H1 V9G sing 563 n n C3 H2 V9G sing 564 n n C3 H3 V9G sing 565 n n C4 H4 V9G sing 566 n n C8 H5 V9G sing 567 n n C9 H6 V9G sing 568 n n C10 H7 V9G sing 569 n n C11 H8 V9G sing 570 n n C11 H9 V9G sing 571 n n C12 H10 V9G sing 572 n n C12 H11 V9G sing 573 n n C13 H12 V9G sing 574 n n C14 H13 V9G sing 575 n n C15 H14 V9G sing 576 n n C16 H15 V9G sing 577 n n C17 H16 V9G sing 578 n n C20 H17 V9G sing 579 n n C22 H18 V9G sing 580 n n C22 H19 V9G sing 581 n n C22 H20 V9G sing 582 n n C7 H21 V9G sing 583 n n N1 H22 V9G sing 584 n n N1 H23 V9G sing 585 n n N5 H24 V9G sing 586 n n O2 H25 V9G sing 587 n n O4 H26 V9G sing 588 n n O12 H27 V9G sing 589 n n O16 H28 V9G sing 590 n n N8 H29 V9G sing 591 n n N8 H30 V9G sing 592 n n O9 H31 V9G sing 593 n n O6 H32 V9G sing 594 n n # _atom_sites.entry_id 8Z97 _atom_sites.fract_transf_matrix[1][1] 1 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 1 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 1 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # _pdbx_nonpoly_scheme.asym_id H _pdbx_nonpoly_scheme.entity_id 7 _pdbx_nonpoly_scheme.mon_id V9G _pdbx_nonpoly_scheme.pdb_strand_id G _pdbx_nonpoly_scheme.ndb_seq_num 1 _pdbx_nonpoly_scheme.pdb_seq_num 101 _pdbx_nonpoly_scheme.auth_seq_num 1 _pdbx_nonpoly_scheme.pdb_mon_id V9G _pdbx_nonpoly_scheme.auth_mon_id V9G _pdbx_nonpoly_scheme.pdb_ins_code . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 V9G . . . H 7 135.812 142.773 116.244 1 133.97 ? C1 V9G 101 G 1 HETATM 2 N N2 V9G . . . H 7 134.44 141.027 114.823 1 134.59 ? N2 V9G 101 G 1 HETATM 3 C C3 V9G . . . H 7 133.018 141.101 115.302 1 134.12 ? C3 V9G 101 G 1 HETATM 4 C C4 V9G . . . H 7 134.764 140.161 113.835 1 135.44 ? C4 V9G 101 G 1 HETATM 5 C C5 V9G . . . H 7 136.588 141.217 114.419 1 132.28 ? C5 V9G 101 G 1 HETATM 6 C C6 V9G . . . H 7 138.211 142.795 115.606 1 131.7 ? C6 V9G 101 G 1 HETATM 7 C C8 V9G . . . H 7 137.036 138.144 113.211 1 138.56 ? C8 V9G 101 G 1 HETATM 8 C C9 V9G . . . H 7 136.942 137.344 112.168 1 135.94 ? C9 V9G 101 G 1 HETATM 9 C C10 V9G . . . H 7 135.681 137.914 111.305 1 132.24 ? C10 V9G 101 G 1 HETATM 10 C C11 V9G . . . H 7 134.403 137.25 111.775 1 139.08 ? C11 V9G 101 G 1 HETATM 11 C C12 V9G . . . H 7 132.078 135.063 117.506 1 138.91 ? C12 V9G 101 G 1 HETATM 12 C C13 V9G . . . H 7 133.166 135.191 116.468 1 137.79 ? C13 V9G 101 G 1 HETATM 13 C C14 V9G . . . H 7 134.664 135.376 117.202 1 134.09 ? C14 V9G 101 G 1 HETATM 14 C C15 V9G . . . H 7 135.33 136.026 116.345 1 133.82 ? C15 V9G 101 G 1 HETATM 15 C C16 V9G . . . H 7 134.274 137.094 115.883 1 138.03 ? C16 V9G 101 G 1 HETATM 16 C C17 V9G . . . H 7 132.944 138.359 117.432 1 138.85 ? C17 V9G 101 G 1 HETATM 17 C C18 V9G . . . H 7 134.506 139.714 118.096 1 135.2 ? C18 V9G 101 G 1 HETATM 18 C C19 V9G . . . H 7 135.286 140.696 118.691 1 131.9 ? C19 V9G 101 G 1 HETATM 19 C C2 V9G . . . H 7 135.55 141.684 115.192 1 134.51 ? C2 V9G 101 G 1 HETATM 20 C C20 V9G . . . H 7 137.121 139.964 117.448 1 132.42 ? C20 V9G 101 G 1 HETATM 21 C C21 V9G . . . H 7 135.048 138.879 117.189 1 135.54 ? C21 V9G 101 G 1 HETATM 22 C C22 V9G . . . H 7 137.014 134.93 114.875 1 133.8 ? C22 V9G 101 G 1 HETATM 23 C C7 V9G . . . H 7 136.664 139.523 112.641 1 129.86 ? C7 V9G 101 G 1 HETATM 24 N N1 V9G . . . H 7 139.542 143.314 115.775 1 129.73 ? N1 V9G 101 G 1 HETATM 25 N N3 V9G . . . H 7 136.097 140.29 113.596 1 132.56 ? N3 V9G 101 G 1 HETATM 26 N N4 V9G . . . H 7 137.957 141.76 114.603 1 130.59 ? N4 V9G 101 G 1 HETATM 27 N N5 V9G . . . H 7 137.128 143.292 116.422 1 133.63 ? N5 V9G 101 G 1 HETATM 28 N N6 V9G . . . H 7 134.076 138.038 116.783 1 138.71 ? N6 V9G 101 G 1 HETATM 29 O O1 V9G . . . H 7 134.926 143.178 116.917 1 134.78 ? O1 V9G 101 G 1 HETATM 30 O O2 V9G . . . H 7 138.142 137.408 111.391 1 130.63 ? O2 V9G 101 G 1 HETATM 31 O O3 V9G . . . H 7 135.628 139.206 111.51 1 129.28 ? O3 V9G 101 G 1 HETATM 32 O O4 V9G . . . H 7 138.437 138.164 113.728 1 133.8 ? O4 V9G 101 G 1 HETATM 33 O O13 V9G . . . H 7 131.385 132.547 116.225 1 139.91 ? O13 V9G 101 G 1 HETATM 34 P P3 V9G . . . H 7 130.578 133.748 115.786 1 140.19 ? P3 V9G 101 G 1 HETATM 35 O O12 V9G . . . H 7 129.133 133.397 115.766 1 139.96 ? O12 V9G 101 G 1 HETATM 36 O O14 V9G . . . H 7 130.826 134.993 116.841 1 139.9 ? O14 V9G 101 G 1 HETATM 37 O O16 V9G . . . H 7 135.26 134.081 117.432 1 129.14 ? O16 V9G 101 G 1 HETATM 38 O O17 V9G . . . H 7 135.632 135.111 115.174 1 136.21 ? O17 V9G 101 G 1 HETATM 39 N N7 V9G . . . H 7 133.209 139.392 118.246 1 137.62 ? N7 V9G 101 G 1 HETATM 40 N N8 V9G . . . H 7 135.142 141.795 119.699 1 130.87 ? N8 V9G 101 G 1 HETATM 41 N N9 V9G . . . H 7 136.571 140.809 118.37 1 130.36 ? N9 V9G 101 G 1 HETATM 42 N N10 V9G . . . H 7 136.353 139 116.861 1 134.85 ? N10 V9G 101 G 1 HETATM 43 O O15 V9G . . . H 7 132.974 136.242 115.749 1 139.93 ? O15 V9G 101 G 1 HETATM 44 O O11 V9G . . . H 7 131.064 134.201 114.273 1 140.11 ? O11 V9G 101 G 1 HETATM 45 P P2 V9G . . . H 7 130.477 135.549 113.475 1 140.35 ? P2 V9G 101 G 1 HETATM 46 O O9 V9G . . . H 7 129.358 135.13 112.533 1 139.98 ? O9 V9G 101 G 1 HETATM 47 O O10 V9G . . . H 7 129.939 136.548 114.497 1 139.96 ? O10 V9G 101 G 1 HETATM 48 O O7 V9G . . . H 7 131.672 136.242 112.619 1 140.04 ? O7 V9G 101 G 1 HETATM 49 P P1 V9G . . . H 7 131.95 137.855 112.607 1 140.07 ? P1 V9G 101 G 1 HETATM 50 O O5 V9G . . . H 7 130.765 138.566 111.97 1 138.04 ? O5 V9G 101 G 1 HETATM 51 O O6 V9G . . . H 7 132.114 138.341 114.036 1 139.89 ? O6 V9G 101 G 1 HETATM 52 O O8 V9G . . . H 7 133.328 138.188 111.738 1 138.87 ? O8 V9G 101 G 1 # _model_server_stats.io_time_ms 26 _model_server_stats.parse_time_ms 12 _model_server_stats.create_model_time_ms 13 _model_server_stats.query_time_ms 312 _model_server_stats.encode_time_ms 3 _model_server_stats.element_count 52 #