data_8Z98 # _model_server_result.job_id srCMyV8Yy-LEv0jST6tDhQ _model_server_result.datetime_utc '2024-10-11 03:20:43' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 8z98 # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"E","auth_seq_id":101}' # _entry.id 8Z98 # _exptl.entry_id 8Z98 _exptl.method 'ELECTRON MICROSCOPY' # _entity.details ? _entity.formula_weight 801.468 _entity.id 5 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description "7-METHYL-GUANOSINE-5'-TRIPHOSPHATE-5'-(2'-O-METHYL)-ADENOSINE" _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 8Z98 _cell.length_a 1 _cell.length_b 1 _cell.length_c 1 _cell.Z_PDB ? _cell.pdbx_unique_axis ? # _symmetry.entry_id 8Z98 _symmetry.cell_setting ? _symmetry.Int_Tables_number 1 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 1' # _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details tetrameric _pdbx_struct_assembly.oligomeric_count 4 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 5 _struct_asym.id E _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order covale ? covale1 D P G 1 D G 2 1_555 E O16 V9G . D V9G 101 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.558 ? hydrog WATSON-CRICK hydrog1 D N1 G 1 D G 2 1_555 D N3 C 8 D C 9 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog2 D N2 G 1 D G 2 1_555 D O2 C 8 D C 9 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog3 D O6 G 1 D G 2 1_555 D N4 C 8 D C 9 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog 'C-A MISPAIR' hydrog4 D N3 C 2 D C 3 1_555 D N6 A 7 D A 8 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog 'A-A MISPAIR' hydrog5 D N3 A 3 D A 4 1_555 D N6 A 6 D A 7 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog 'A-A MISPAIR' hydrog6 D N3 A 4 D A 5 1_555 D N6 A 6 D A 7 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? # _chem_comp.formula 'C22 H32 N10 O17 P3' _chem_comp.formula_weight 801.468 _chem_comp.id V9G _chem_comp.mon_nstd_flag . _chem_comp.name "7-METHYL-GUANOSINE-5'-TRIPHOSPHATE-5'-(2'-O-METHYL)-ADENOSINE" _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C22 O17 V9G sing 471 n n O17 C15 V9G sing 472 n n O16 C14 V9G sing 473 n n C15 C14 V9G sing 474 n n C15 C16 V9G sing 475 n n C14 C13 V9G sing 476 n n C16 O15 V9G sing 477 n n C16 N6 V9G sing 478 n n C13 O15 V9G sing 479 n n C13 C12 V9G sing 480 n n N10 C20 V9G doub 481 n y N10 C21 V9G sing 482 n y C20 N9 V9G sing 483 n y C21 N6 V9G sing 484 n y C21 C18 V9G doub 485 n y C12 O14 V9G sing 486 n n N6 C17 V9G sing 487 n y N9 C19 V9G doub 488 n y O14 P3 V9G sing 489 n n C17 N7 V9G doub 490 n y C18 C19 V9G sing 491 n y C18 N7 V9G sing 492 n y C19 N8 V9G sing 493 n n O13 P3 V9G doub 494 n n P3 O11 V9G sing 495 n n P3 O12 V9G sing 496 n n O11 P2 V9G sing 497 n n O10 P2 V9G doub 498 n n P2 O7 V9G sing 499 n n P2 O9 V9G sing 500 n n O7 P1 V9G sing 501 n n O5 P1 V9G doub 502 n n O6 P1 V9G sing 503 n n P1 O8 V9G sing 504 n n C3 N2 V9G sing 505 n n O8 C11 V9G sing 506 n n N2 C4 V9G sing 507 n y N2 C2 V9G sing 508 n y O1 C1 V9G doub 509 n n C11 C10 V9G sing 510 n n C4 N3 V9G doub 511 n y C2 C1 V9G sing 512 n n C2 C5 V9G doub 513 n y O2 C9 V9G sing 514 n n C1 N5 V9G sing 515 n n C9 C10 V9G sing 516 n n C9 C8 V9G sing 517 n n C10 O3 V9G sing 518 n n N3 C5 V9G sing 519 n y N3 C7 V9G sing 520 n n O3 C7 V9G sing 521 n n C5 N4 V9G sing 522 n n N5 C6 V9G sing 523 n n C8 C7 V9G sing 524 n n C8 O4 V9G sing 525 n n N4 C6 V9G doub 526 n n C6 N1 V9G sing 527 n n C3 H1 V9G sing 528 n n C3 H2 V9G sing 529 n n C3 H3 V9G sing 530 n n C4 H4 V9G sing 531 n n C8 H5 V9G sing 532 n n C9 H6 V9G sing 533 n n C10 H7 V9G sing 534 n n C11 H8 V9G sing 535 n n C11 H9 V9G sing 536 n n C12 H10 V9G sing 537 n n C12 H11 V9G sing 538 n n C13 H12 V9G sing 539 n n C14 H13 V9G sing 540 n n C15 H14 V9G sing 541 n n C16 H15 V9G sing 542 n n C17 H16 V9G sing 543 n n C20 H17 V9G sing 544 n n C22 H18 V9G sing 545 n n C22 H19 V9G sing 546 n n C22 H20 V9G sing 547 n n C7 H21 V9G sing 548 n n N1 H22 V9G sing 549 n n N1 H23 V9G sing 550 n n N5 H24 V9G sing 551 n n O2 H25 V9G sing 552 n n O4 H26 V9G sing 553 n n O12 H27 V9G sing 554 n n O16 H28 V9G sing 555 n n N8 H29 V9G sing 556 n n N8 H30 V9G sing 557 n n O9 H31 V9G sing 558 n n O6 H32 V9G sing 559 n n # _atom_sites.entry_id 8Z98 _atom_sites.fract_transf_matrix[1][1] 1 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 1 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 1 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # _pdbx_nonpoly_scheme.asym_id E _pdbx_nonpoly_scheme.entity_id 5 _pdbx_nonpoly_scheme.mon_id V9G _pdbx_nonpoly_scheme.pdb_strand_id D _pdbx_nonpoly_scheme.ndb_seq_num 1 _pdbx_nonpoly_scheme.pdb_seq_num 101 _pdbx_nonpoly_scheme.auth_seq_num 1 _pdbx_nonpoly_scheme.pdb_mon_id V9G _pdbx_nonpoly_scheme.auth_mon_id V9G _pdbx_nonpoly_scheme.pdb_ins_code . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C12 V9G . . . E 5 105.779 129.023 100.487 1 94.16 ? C12 V9G 101 D 1 HETATM 2 C C13 V9G . . . E 5 106.445 130.155 99.745 1 94.16 ? C13 V9G 101 D 1 HETATM 3 C C14 V9G . . . E 5 108.065 130.249 100.171 1 94.16 ? C14 V9G 101 D 1 HETATM 4 C C15 V9G . . . E 5 108.392 131.448 99.91 1 94.16 ? C15 V9G 101 D 1 HETATM 5 C C16 V9G . . . E 5 107.103 132.273 100.285 1 94.16 ? C16 V9G 101 D 1 HETATM 6 C C17 V9G . . . E 5 106.438 132.26 102.6 1 94.16 ? C17 V9G 101 D 1 HETATM 7 C C18 V9G . . . E 5 107.872 133.753 103.275 1 94.16 ? C18 V9G 101 D 1 HETATM 8 C C19 V9G . . . E 5 108.665 134.661 103.964 1 94.16 ? C19 V9G 101 D 1 HETATM 9 C C20 V9G . . . E 5 109.777 135.172 101.98 1 94.16 ? C20 V9G 101 D 1 HETATM 10 C C21 V9G . . . E 5 108.051 133.578 101.955 1 94.16 ? C21 V9G 101 D 1 HETATM 11 C C22 V9G . . . E 5 108.01 132.66 97.787 1 94.16 ? C22 V9G 101 D 1 HETATM 12 N N6 V9G . . . E 5 107.164 132.656 101.543 1 94.16 ? N6 V9G 101 D 1 HETATM 13 O O13 V9G . . . E 5 104.275 130.24 103.713 1 94.16 ? O13 V9G 101 D 1 HETATM 14 P P3 V9G . . . E 5 104.588 129.045 102.844 1 94.16 ? P3 V9G 101 D 1 HETATM 15 O O12 V9G . . . E 5 103.493 128.047 102.963 1 94.16 ? O12 V9G 101 D 1 HETATM 16 O O14 V9G . . . E 5 104.713 129.534 101.273 1 94.16 ? O14 V9G 101 D 1 HETATM 17 O O16 V9G . . . E 5 108.848 129.326 99.38 1 94.16 ? O16 V9G 101 D 1 HETATM 18 O O17 V9G . . . E 5 108.703 131.593 98.433 1 94.16 ? O17 V9G 101 D 1 HETATM 19 N N7 V9G . . . E 5 106.876 132.939 103.673 1 94.16 ? N7 V9G 101 D 1 HETATM 20 N N8 V9G . . . E 5 108.841 135.182 105.359 1 94.16 ? N8 V9G 101 D 1 HETATM 21 N N9 V9G . . . E 5 109.598 135.353 103.321 1 94.16 ? N9 V9G 101 D 1 HETATM 22 N N10 V9G . . . E 5 109 134.282 101.302 1 94.16 ? N10 V9G 101 D 1 HETATM 23 O O15 V9G . . . E 5 105.917 131.277 100.083 1 94.16 ? O15 V9G 101 D 1 HETATM 24 O O11 V9G . . . E 5 106.011 128.372 103.339 1 94.16 ? O11 V9G 101 D 1 HETATM 25 P P2 V9G . . . E 5 106.269 127.796 104.888 1 94.16 ? P2 V9G 101 D 1 HETATM 26 O O9 V9G . . . E 5 106.209 128.952 105.876 1 94.16 ? O9 V9G 101 D 1 HETATM 27 O O10 V9G . . . E 5 107.641 127.132 104.968 1 94.16 ? O10 V9G 101 D 1 HETATM 28 O O7 V9G . . . E 5 105.119 126.713 105.266 1 94.16 ? O7 V9G 101 D 1 HETATM 29 P P1 V9G . . . E 5 104.695 125.453 104.312 1 94.16 ? P1 V9G 101 D 1 HETATM 30 O O5 V9G . . . E 5 105.332 124.178 104.843 1 94.16 ? O5 V9G 101 D 1 HETATM 31 O O6 V9G . . . E 5 105.172 125.702 102.89 1 94.16 ? O6 V9G 101 D 1 HETATM 32 O O8 V9G . . . E 5 103.04 125.296 104.321 1 94.16 ? O8 V9G 101 D 1 # _model_server_stats.io_time_ms 140 _model_server_stats.parse_time_ms 11 _model_server_stats.create_model_time_ms 9 _model_server_stats.query_time_ms 304 _model_server_stats.encode_time_ms 2 _model_server_stats.element_count 32 #