data_8Z9H # _model_server_result.job_id KpyZShdyw0vHOM9cF11VAw _model_server_result.datetime_utc '2025-02-22 19:44:23' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 8z9h # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"M","auth_seq_id":1}' # _entry.id 8Z9H # _exptl.entry_id 8Z9H _exptl.method 'ELECTRON MICROSCOPY' # _entity.details ? _entity.formula_weight 801.468 _entity.id 7 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description "7-METHYL-GUANOSINE-5'-TRIPHOSPHATE-5'-(2'-O-METHYL)-ADENOSINE" _entity.pdbx_number_of_molecules 2 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 8Z9H _cell.length_a 1 _cell.length_b 1 _cell.length_c 1 _cell.Z_PDB ? _cell.pdbx_unique_axis ? # _symmetry.entry_id 8Z9H _symmetry.cell_setting ? _symmetry.Int_Tables_number 1 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 1' # _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details 11-meric _pdbx_struct_assembly.oligomeric_count 11 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J,K,L,M _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 7 L N N ? 7 M N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order covale ? covale1 L O16 V9G . G V9G 1 1_555 G P G 1 G G 2 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.558 ? covale ? covale2 M O16 V9G . K V9G 1 1_555 K P G 1 K G 2 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.559 ? hydrog 'A-A MISPAIR' hydrog1 D N6 A 1 D A 1 1_555 D N3 A 10 D A 10 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog2 D N1 G 2 D G 2 1_555 D N3 C 9 D C 9 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog3 D N2 G 2 D G 2 1_555 D O2 C 9 D C 9 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog4 D O6 G 2 D G 2 1_555 D N4 C 9 D C 9 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog5 D N1 A 3 D A 3 1_555 D N3 U 8 D U 8 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog6 D N6 A 3 D A 3 1_555 D O4 U 8 D U 8 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog 'G-A MISPAIR' hydrog7 D N3 G 4 D G 4 1_555 D N6 A 7 D A 7 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog8 F N3 U 8 F U 8 1_555 G N1 A 9 G A 10 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog9 F O4 U 8 F U 8 1_555 G N6 A 9 G A 10 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog10 F N1 G 9 F G 9 1_555 G N3 C 8 G C 9 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog11 F N2 G 9 F G 9 1_555 G O2 C 8 G C 9 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog12 F O6 G 9 F G 9 1_555 G N4 C 8 G C 9 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog13 F N3 U 10 F U 10 1_555 G N1 A 7 G A 8 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog14 F O4 U 10 F U 10 1_555 G N6 A 7 G A 8 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog15 F N3 U 11 F U 11 1_555 G N1 A 6 G A 7 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog16 F O4 U 11 F U 11 1_555 G N6 A 6 G A 7 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog17 F N3 U 12 F U 12 1_555 G N1 A 5 G A 6 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog18 F O4 U 12 F U 12 1_555 G N6 A 5 G A 6 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog19 F N3 U 13 F U 13 1_555 G N1 A 4 G A 5 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog20 F O4 U 13 F U 13 1_555 G N6 A 4 G A 5 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog21 F N3 U 14 F U 14 1_555 G N1 A 3 G A 4 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog22 F O4 U 14 F U 14 1_555 G N6 A 3 G A 4 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog23 F N1 G 15 F G 15 1_555 G N3 C 2 G C 3 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog24 F N2 G 15 F G 15 1_555 G O2 C 2 G C 3 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog25 F O6 G 15 F G 15 1_555 G N4 C 2 G C 3 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog26 F N3 C 16 F C 16 1_555 G N1 G 1 G G 2 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog27 F N4 C 16 F C 16 1_555 G O6 G 1 G G 2 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog28 F O2 C 16 F C 16 1_555 G N2 G 1 G G 2 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog29 K N1 G 1 K G 2 1_555 K N3 C 8 K C 9 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog30 K N2 G 1 K G 2 1_555 K O2 C 8 K C 9 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog31 K O6 G 1 K G 2 1_555 K N4 C 8 K C 9 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog 'C-A MISPAIR' hydrog32 K N3 C 2 K C 3 1_555 K N6 A 7 K A 8 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog 'A-A MISPAIR' hydrog33 K N3 A 4 K A 5 1_555 K N6 A 6 K A 7 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? # _chem_comp.formula 'C22 H32 N10 O17 P3' _chem_comp.formula_weight 801.468 _chem_comp.id V9G _chem_comp.mon_nstd_flag . _chem_comp.name "7-METHYL-GUANOSINE-5'-TRIPHOSPHATE-5'-(2'-O-METHYL)-ADENOSINE" _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C22 O17 V9G sing 506 n n O17 C15 V9G sing 507 n n O16 C14 V9G sing 508 n n C15 C14 V9G sing 509 n n C15 C16 V9G sing 510 n n C14 C13 V9G sing 511 n n C16 O15 V9G sing 512 n n C16 N6 V9G sing 513 n n C13 O15 V9G sing 514 n n C13 C12 V9G sing 515 n n N10 C20 V9G doub 516 n y N10 C21 V9G sing 517 n y C20 N9 V9G sing 518 n y C21 N6 V9G sing 519 n y C21 C18 V9G doub 520 n y C12 O14 V9G sing 521 n n N6 C17 V9G sing 522 n y N9 C19 V9G doub 523 n y O14 P3 V9G sing 524 n n C17 N7 V9G doub 525 n y C18 C19 V9G sing 526 n y C18 N7 V9G sing 527 n y C19 N8 V9G sing 528 n n O13 P3 V9G doub 529 n n P3 O11 V9G sing 530 n n P3 O12 V9G sing 531 n n O11 P2 V9G sing 532 n n O10 P2 V9G doub 533 n n P2 O7 V9G sing 534 n n P2 O9 V9G sing 535 n n O7 P1 V9G sing 536 n n O5 P1 V9G doub 537 n n O6 P1 V9G sing 538 n n P1 O8 V9G sing 539 n n C3 N2 V9G sing 540 n n O8 C11 V9G sing 541 n n N2 C4 V9G sing 542 n y N2 C2 V9G sing 543 n y O1 C1 V9G doub 544 n n C11 C10 V9G sing 545 n n C4 N3 V9G doub 546 n y C2 C1 V9G sing 547 n n C2 C5 V9G doub 548 n y O2 C9 V9G sing 549 n n C1 N5 V9G sing 550 n n C9 C10 V9G sing 551 n n C9 C8 V9G sing 552 n n C10 O3 V9G sing 553 n n N3 C5 V9G sing 554 n y N3 C7 V9G sing 555 n n O3 C7 V9G sing 556 n n C5 N4 V9G sing 557 n n N5 C6 V9G sing 558 n n C8 C7 V9G sing 559 n n C8 O4 V9G sing 560 n n N4 C6 V9G doub 561 n n C6 N1 V9G sing 562 n n C3 H1 V9G sing 563 n n C3 H2 V9G sing 564 n n C3 H3 V9G sing 565 n n C4 H4 V9G sing 566 n n C8 H5 V9G sing 567 n n C9 H6 V9G sing 568 n n C10 H7 V9G sing 569 n n C11 H8 V9G sing 570 n n C11 H9 V9G sing 571 n n C12 H10 V9G sing 572 n n C12 H11 V9G sing 573 n n C13 H12 V9G sing 574 n n C14 H13 V9G sing 575 n n C15 H14 V9G sing 576 n n C16 H15 V9G sing 577 n n C17 H16 V9G sing 578 n n C20 H17 V9G sing 579 n n C22 H18 V9G sing 580 n n C22 H19 V9G sing 581 n n C22 H20 V9G sing 582 n n C7 H21 V9G sing 583 n n N1 H22 V9G sing 584 n n N1 H23 V9G sing 585 n n N5 H24 V9G sing 586 n n O2 H25 V9G sing 587 n n O4 H26 V9G sing 588 n n O12 H27 V9G sing 589 n n O16 H28 V9G sing 590 n n N8 H29 V9G sing 591 n n N8 H30 V9G sing 592 n n O9 H31 V9G sing 593 n n O6 H32 V9G sing 594 n n # _atom_sites.entry_id 8Z9H _atom_sites.fract_transf_matrix[1][1] 1 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 1 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 1 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code L 7 V9G G 1 1 1 V9G V9G . M 7 V9G K 1 1 1 V9G V9G . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C12 V9G . . . M 7 113.955 164.245 127.894 1 85.42 ? C12 V9G 1 K 1 HETATM 2 C C13 V9G . . . M 7 114.152 163.794 126.468 1 82.48 ? C13 V9G 1 K 1 HETATM 3 C C14 V9G . . . M 7 113.239 164.739 125.426 1 84.23 ? C14 V9G 1 K 1 HETATM 4 C C15 V9G . . . M 7 113.115 164.022 124.386 1 85.06 ? C15 V9G 1 K 1 HETATM 5 C C16 V9G . . . M 7 112.954 162.566 124.964 1 83.24 ? C16 V9G 1 K 1 HETATM 6 C C17 V9G . . . M 7 110.959 162.291 126.29 1 81.81 ? C17 V9G 1 K 1 HETATM 7 C C18 V9G . . . M 7 109.645 161.747 124.642 1 71.97 ? C18 V9G 1 K 1 HETATM 8 C C19 V9G . . . M 7 108.606 161.381 123.797 1 74.18 ? C19 V9G 1 K 1 HETATM 9 C C20 V9G . . . M 7 110.074 161.461 121.987 1 78.23 ? C20 V9G 1 K 1 HETATM 10 C C21 V9G . . . M 7 110.872 161.96 124.139 1 76.39 ? C21 V9G 1 K 1 HETATM 11 C C22 V9G . . . M 7 114.799 162.859 123.001 1 89.71 ? C22 V9G 1 K 1 HETATM 12 N N6 V9G . . . M 7 111.68 162.295 125.158 1 76.25 ? N6 V9G 1 K 1 HETATM 13 O O13 V9G . . . M 7 111.685 163.272 130.731 1 83.02 ? O13 V9G 1 K 1 HETATM 14 P P3 V9G . . . M 7 112.007 164.299 129.67 1 92.17 ? P3 V9G 1 K 1 HETATM 15 O O12 V9G . . . M 7 112.858 165.367 130.255 1 89.25 ? O12 V9G 1 K 1 HETATM 16 O O14 V9G . . . M 7 112.83 163.572 128.44 1 87.3 ? O14 V9G 1 K 1 HETATM 17 O O16 V9G . . . M 7 113.931 165.97 125.117 1 86.2 ? O16 V9G 1 K 1 HETATM 18 O O17 V9G . . . M 7 114.372 164.108 123.542 1 88.46 ? O17 V9G 1 K 1 HETATM 19 N N7 V9G . . . M 7 109.7 161.952 125.972 1 75.98 ? N7 V9G 1 K 1 HETATM 20 N N8 V9G . . . M 7 107.146 161.051 123.871 1 74.3 ? N8 V9G 1 K 1 HETATM 21 N N9 V9G . . . M 7 108.826 161.245 122.495 1 75.06 ? N9 V9G 1 K 1 HETATM 22 N N10 V9G . . . M 7 111.094 161.82 122.815 1 82.37 ? N10 V9G 1 K 1 HETATM 23 O O15 V9G . . . M 7 113.719 162.592 126.325 1 89.38 ? O15 V9G 1 K 1 HETATM 24 O O11 V9G . . . M 7 110.608 164.95 129.081 1 88.55 ? O11 V9G 1 K 1 HETATM 25 P P2 V9G . . . M 7 109.732 166.162 129.833 1 102.86 ? P2 V9G 1 K 1 HETATM 26 O O9 V9G . . . M 7 108.487 165.565 130.47 1 86.9 ? O9 V9G 1 K 1 HETATM 27 O O10 V9G . . . M 7 109.316 167.201 128.795 1 89.38 ? O10 V9G 1 K 1 HETATM 28 O O7 V9G . . . M 7 110.639 166.885 130.972 1 94.32 ? O7 V9G 1 K 1 HETATM 29 P P1 V9G . . . M 7 110.793 166.341 132.507 1 108.55 ? P1 V9G 1 K 1 HETATM 30 O O5 V9G . . . M 7 112.258 166.398 132.913 1 90.47 ? O5 V9G 1 K 1 HETATM 31 O O6 V9G . . . M 7 110.298 164.907 132.598 1 90.18 ? O6 V9G 1 K 1 HETATM 32 O O8 V9G . . . M 7 109.897 167.302 133.527 1 95.23 ? O8 V9G 1 K 1 # _model_server_stats.io_time_ms 78 _model_server_stats.parse_time_ms 10 _model_server_stats.create_model_time_ms 31 _model_server_stats.query_time_ms 320 _model_server_stats.encode_time_ms 7 _model_server_stats.element_count 32 #