data_8ZAS # _model_server_result.job_id a69PFLQn2OBzuPfMwMonhQ _model_server_result.datetime_utc '2025-07-26 19:06:51' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 8zas # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"C","auth_seq_id":101}' # _entry.id 8ZAS # _exptl.entry_id 8ZAS _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 135.127 _entity.id 3 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description ADENINE _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 96.38 _cell.angle_gamma 90 _cell.entry_id 8ZAS _cell.length_a 61.366 _cell.length_b 26.929 _cell.length_c 63.532 _cell.Z_PDB 4 _cell.pdbx_unique_axis ? # _symmetry.entry_id 8ZAS _symmetry.cell_setting ? _symmetry.Int_Tables_number 5 _symmetry.space_group_name_Hall 'C 2y' _symmetry.space_group_name_H-M 'C 1 2 1' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 3 _struct_asym.id C _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order metalc ? metalc1 A O6 DG 6 A DG 4 1_555 D NA NA . A NA 102 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.816 ? metalc ? metalc2 A O4 DT 7 A DT 5 1_555 D NA NA . A NA 102 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.922 ? metalc ? metalc3 D NA NA . A NA 102 1_555 B O6 DG 12 B DG 25 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.916 ? hydrog WATSON-CRICK hydrog1 A N1 DG 1 A DG -1 1_555 B N3 DC 18 B DC 31 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog2 A N2 DG 1 A DG -1 1_555 B O2 DC 18 B DC 31 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog3 A O6 DG 1 A DG -1 1_555 B N4 DC 18 B DC 31 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog4 A N1 DG 2 A DG 0 1_555 B N3 DC 17 B DC 30 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog5 A N2 DG 2 A DG 0 1_555 B O2 DC 17 B DC 30 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog6 A O6 DG 2 A DG 0 1_555 B N4 DC 17 B DC 30 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog7 A N1 DG 3 A DG 1 1_555 B N3 DC 16 B DC 29 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog8 A N2 DG 3 A DG 1 1_555 B O2 DC 16 B DC 29 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog9 A O6 DG 3 A DG 1 1_555 B N4 DC 16 B DC 29 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog10 A N3 DC 4 A DC 2 1_555 B N1 DG 15 B DG 28 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog11 A N4 DC 4 A DC 2 1_555 B O6 DG 15 B DG 28 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog12 A O2 DC 4 A DC 2 1_555 B N2 DG 15 B DG 28 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog13 A N1 DG 5 A DG 3 1_555 B N3 DC 14 B DC 27 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog14 A N2 DG 5 A DG 3 1_555 B O2 DC 14 B DC 27 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog15 A O6 DG 5 A DG 3 1_555 B N4 DC 14 B DC 27 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog16 A N1 DG 6 A DG 4 1_555 B N3 DC 13 B DC 26 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog17 A N2 DG 6 A DG 4 1_555 B O2 DC 13 B DC 26 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog18 A O6 DG 6 A DG 4 1_555 B N4 DC 13 B DC 26 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog TYPE_28_PAIR hydrog19 A N3 DT 7 A DT 5 1_555 B O6 DG 12 B DG 25 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog TYPE_28_PAIR hydrog20 A O2 DT 7 A DT 5 1_555 B N1 DG 12 B DG 25 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog TYPE_7_PAIR hydrog21 A N7 DG 8 A DG 6 1_555 B N1 DG 6 B DG 19 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog TYPE_7_PAIR hydrog22 A O6 DG 8 A DG 6 1_555 B N2 DG 6 B DG 19 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog23 A N1 DG 8 A DG 6 1_555 B N3 DC 11 B DC 24 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog24 A N2 DG 8 A DG 6 1_555 B O2 DC 11 B DC 24 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog25 A O6 DG 8 A DG 6 1_555 B N4 DC 11 B DC 24 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog TYPE_7_PAIR hydrog26 A N7 DG 9 A DG 7 1_555 B N1 DG 5 B DG 18 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog TYPE_7_PAIR hydrog27 A O6 DG 9 A DG 7 1_555 B N2 DG 5 B DG 18 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog28 A N1 DG 9 A DG 7 1_555 B N3 DC 10 B DC 23 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog29 A N2 DG 9 A DG 7 1_555 B O2 DC 10 B DC 23 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog30 A O6 DG 9 A DG 7 1_555 B N4 DC 10 B DC 23 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog 'DT-DA PAIR' hydrog31 A O2 DT 10 A DT 8 1_555 A N6 DA 13 A DA 11 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog32 A N3 DC 11 A DC 9 1_555 B N1 DG 8 B DG 21 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog33 A N4 DC 11 A DC 9 1_555 B O6 DG 8 B DG 21 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog34 A O2 DC 11 A DC 9 1_555 B N2 DG 8 B DG 21 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog35 A N1 DA 13 A DA 11 1_555 B N3 DT 3 B DT 16 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog36 A N6 DA 13 A DA 11 1_555 B O4 DT 3 B DT 16 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog37 A N3 DT 14 A DT 12 1_555 B N1 DA 2 B DA 15 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog38 A O4 DT 14 A DT 12 1_555 B N6 DA 2 B DA 15 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog TYPE_18_PAIR hydrog39 A N3 DT 15 A DT 13 1_555 B N3 DC 1 B DC 14 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog TYPE_18_PAIR hydrog40 A O4 DT 15 A DT 13 1_555 B N4 DC 1 B DC 14 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? # _chem_comp.formula 'C5 H5 N5' _chem_comp.formula_weight 135.127 _chem_comp.id ADE _chem_comp.mon_nstd_flag . _chem_comp.name ADENINE _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag N9 C8 ADE sing 1 n y N9 C4 ADE sing 2 n y N9 HN9 ADE sing 3 n n C8 N7 ADE doub 4 n y C8 H8 ADE sing 5 n n N7 C5 ADE sing 6 n y C5 C6 ADE sing 7 n y C5 C4 ADE doub 8 n y C6 N6 ADE sing 9 n n C6 N1 ADE doub 10 n y N6 HN61 ADE sing 11 n n N6 HN62 ADE sing 12 n n N1 C2 ADE sing 13 n y C2 N3 ADE doub 14 n y C2 H2 ADE sing 15 n n N3 C4 ADE sing 16 n y # _atom_sites.entry_id 8ZAS _atom_sites.fract_transf_matrix[1][1] 0.016296 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0.001822 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.037135 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.015838 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 3 ADE A 1 101 101 ADE ADE . D 4 NA A 1 102 1 NA NA . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 N N9 ADE . . . C 3 8.782 13.399 21.489 1 110.17 ? N9 ADE 101 A 1 HETATM 2 C C8 ADE . . . C 3 9.684 12.967 22.404 1 104.88 ? C8 ADE 101 A 1 HETATM 3 N N7 ADE . . . C 3 9.575 11.686 22.699 1 100.64 ? N7 ADE 101 A 1 HETATM 4 C C5 ADE . . . C 3 8.523 11.258 21.907 1 103.23 ? C5 ADE 101 A 1 HETATM 5 C C6 ADE . . . C 3 7.902 10.005 21.735 1 101.41 ? C6 ADE 101 A 1 HETATM 6 N N6 ADE . . . C 3 8.27 8.9 22.39 1 97.42 ? N6 ADE 101 A 1 HETATM 7 N N1 ADE . . . C 3 6.876 9.923 20.863 1 105.21 ? N1 ADE 101 A 1 HETATM 8 C C2 ADE . . . C 3 6.5 11.023 20.206 1 110.6 ? C2 ADE 101 A 1 HETATM 9 N N3 ADE . . . C 3 7.008 12.255 20.286 1 113.09 ? N3 ADE 101 A 1 HETATM 10 C C4 ADE . . . C 3 8.025 12.311 21.155 1 109.07 ? C4 ADE 101 A 1 HETATM 11 H HN9 ADE . . . C 3 8.702 14.197 21.181 1 129.74 ? HN9 ADE 101 A 1 HETATM 12 H H8 ADE . . . C 3 10.321 13.524 22.789 1 123.38 ? H8 ADE 101 A 1 HETATM 13 H HN61 ADE . . . C 3 7.67 8.354 22.68 1 117.4 ? HN61 ADE 101 A 1 HETATM 14 H HN62 ADE . . . C 3 9.101 8.734 22.525 1 117.4 ? HN62 ADE 101 A 1 HETATM 15 H H2 ADE . . . C 3 5.791 10.916 19.614 1 130.25 ? H2 ADE 101 A 1 # _model_server_stats.io_time_ms 52 _model_server_stats.parse_time_ms 17 _model_server_stats.create_model_time_ms 5 _model_server_stats.query_time_ms 310 _model_server_stats.encode_time_ms 8 _model_server_stats.element_count 15 #