data_8ZB8
#
_model_server_result.job_id            tNKTWj2f6HtVk9y3wbFTXA 
_model_server_result.datetime_utc      '2024-11-14 19:16:18' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          8zb8 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"N","auth_seq_id":504}' 
#
_entry.id    8ZB8 
#
_exptl.entry_id    8ZB8 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              308.401 
_entity.id                          11 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            ~{N},2-dimethyl-~{N}-(1-methylindol-5-yl)thieno[3,2-d]pyrimidin-4-amine 
_entity.pdbx_number_of_molecules    2 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          90 
_cell.angle_gamma         90 
_cell.entry_id            8ZB8 
_cell.length_a            105.599 
_cell.length_b            158.202 
_cell.length_c            180.521 
_cell.Z_PDB               8 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 8ZB8 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        19 
_symmetry.space_group_name_Hall    ? 
_symmetry.space_group_name_H-M     'P 21 21 21' 
#
_pdbx_struct_assembly.method_details        ? 
_pdbx_struct_assembly.oligomeric_details    hexameric 
_pdbx_struct_assembly.oligomeric_count      6 
_pdbx_struct_assembly.details               author_defined_assembly 
_pdbx_struct_assembly.id                    1 
#
_pdbx_struct_assembly_gen.asym_id_list       A,B,C,D,E,F,G,H,I,J,K,L,M,N,O,P,Q,R,S,T 
_pdbx_struct_assembly_gen.assembly_id        1 
_pdbx_struct_assembly_gen.oper_expression    1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    x,y,z 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
loop_
_struct_asym.details
_struct_asym.entity_id
_struct_asym.id
_struct_asym.pdbx_modified
_struct_asym.pdbx_blank_PDB_chainid_flag
? 11 N N N 
? 11 S N N 
#
loop_
_struct_conn.conn_type_id
_struct_conn.details
_struct_conn.id
_struct_conn.ptnr1_label_asym_id
_struct_conn.ptnr1_label_atom_id
_struct_conn.ptnr1_label_comp_id
_struct_conn.ptnr1_label_seq_id
_struct_conn.ptnr1_auth_asym_id
_struct_conn.ptnr1_auth_comp_id
_struct_conn.ptnr1_auth_seq_id
_struct_conn.ptnr1_symmetry
_struct_conn.ptnr2_label_asym_id
_struct_conn.ptnr2_label_atom_id
_struct_conn.ptnr2_label_comp_id
_struct_conn.ptnr2_label_seq_id
_struct_conn.ptnr2_auth_asym_id
_struct_conn.ptnr2_auth_comp_id
_struct_conn.ptnr2_auth_seq_id
_struct_conn.ptnr2_symmetry
_struct_conn.pdbx_ptnr1_PDB_ins_code
_struct_conn.pdbx_ptnr1_label_alt_id
_struct_conn.pdbx_ptnr1_standard_comp_id
_struct_conn.pdbx_ptnr2_PDB_ins_code
_struct_conn.pdbx_ptnr2_label_alt_id
_struct_conn.pdbx_ptnr3_PDB_ins_code
_struct_conn.pdbx_ptnr3_label_alt_id
_struct_conn.pdbx_ptnr3_label_asym_id
_struct_conn.pdbx_ptnr3_label_atom_id
_struct_conn.pdbx_ptnr3_label_comp_id
_struct_conn.pdbx_ptnr3_label_seq_id
_struct_conn.pdbx_PDB_id
_struct_conn.pdbx_dist_value
_struct_conn.pdbx_value_order
metalc ? metalc1 A OD1 ASP 39 A ASP 39 1_555 I CA CA . A CA 503 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.276 ? 
metalc ? metalc2 A OD2 ASP 39 A ASP 39 1_555 I CA CA . A CA 503 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 3.088 ? 
metalc ? metalc3 A OG1 THR 41 A THR 41 1_555 I CA CA . A CA 503 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.101 ? 
metalc ? metalc4 A O GLY 44 A GLY 44 1_555 I CA CA . A CA 503 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.348 ? 
metalc ? metalc5 A OE2 GLU 55 A GLU 55 1_555 I CA CA . A CA 503 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.824 ? 
metalc ? metalc6 G O2G GTP . A GTP 501 1_555 H MG MG . A MG 502 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.959 ? 
metalc ? metalc7 G O3G GTP . A GTP 501 1_555 H MG MG . A MG 502 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.942 ? 
metalc ? metalc8 G O2B GTP . A GTP 501 1_555 H MG MG . A MG 502 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.598 ? 
metalc ? metalc9 B OE1 GLN 11 B GLN 11 1_555 L MG MG . B MG 502 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.637 ? 
metalc ? metalc10 K O2A GDP . B GDP 501 1_555 L MG MG . B MG 502 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.563 ? 
metalc ? metalc11 C OD1 ASP 39 C ASP 39 1_555 Q CA CA . C CA 503 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.246 ? 
metalc ? metalc12 C OD2 ASP 39 C ASP 39 1_555 Q CA CA . C CA 503 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.084 ? 
metalc ? metalc13 C O THR 41 C THR 41 1_555 Q CA CA . C CA 503 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.499 ? 
metalc ? metalc14 C OG1 THR 41 C THR 41 1_555 Q CA CA . C CA 503 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.129 ? 
metalc ? metalc15 C O GLY 44 C GLY 44 1_555 Q CA CA . C CA 503 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.391 ? 
metalc ? metalc16 C OE1 GLU 55 C GLU 55 1_555 Q CA CA . C CA 503 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.942 ? 
metalc ? metalc17 O O3G GTP . C GTP 501 1_555 P MG MG . C MG 502 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.174 ? 
metalc ? metalc18 O O2B GTP . C GTP 501 1_555 P MG MG . C MG 502 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.265 ? 
#
_chem_comp.formula           'C17 H16 N4 S' 
_chem_comp.formula_weight    308.401 
_chem_comp.id                A1D8I 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              ~{N},2-dimethyl-~{N}-(1-methylindol-5-yl)thieno[3,2-d]pyrimidin-4-amine 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     ? 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
C15 C14 A1D8I doub 1 n y 
C15 N16 A1D8I sing 2 n y 
C14 C12 A1D8I sing 3 n y 
C17 N16 A1D8I sing 4 n n 
N16 C11 A1D8I sing 5 n y 
C12 C11 A1D8I doub 6 n y 
C12 C13 A1D8I sing 7 n y 
C11 C10 A1D8I sing 8 n y 
C13 C08 A1D8I doub 9 n y 
C10 C09 A1D8I doub 10 n y 
C08 C09 A1D8I sing 11 n y 
C08 N07 A1D8I sing 12 n n 
S19 C20 A1D8I sing 13 n y 
S19 C05 A1D8I sing 14 n y 
N07 C18 A1D8I sing 15 n n 
N07 C06 A1D8I sing 16 n n 
C20 C21 A1D8I doub 17 n y 
C05 C06 A1D8I doub 18 n y 
C05 C04 A1D8I sing 19 n y 
C06 N01 A1D8I sing 20 n y 
C21 C04 A1D8I sing 21 n y 
C04 N03 A1D8I doub 22 n y 
N01 C02 A1D8I doub 23 n y 
N03 C02 A1D8I sing 24 n y 
C02 C22 A1D8I sing 25 n n 
C10 H1 A1D8I sing 26 n n 
C13 H2 A1D8I sing 27 n n 
C14 H3 A1D8I sing 28 n n 
C15 H4 A1D8I sing 29 n n 
C17 H5 A1D8I sing 30 n n 
C17 H6 A1D8I sing 31 n n 
C17 H7 A1D8I sing 32 n n 
C18 H8 A1D8I sing 33 n n 
C18 H9 A1D8I sing 34 n n 
C18 H10 A1D8I sing 35 n n 
C20 H11 A1D8I sing 36 n n 
C21 H12 A1D8I sing 37 n n 
C22 H13 A1D8I sing 38 n n 
C22 H14 A1D8I sing 39 n n 
C22 H15 A1D8I sing 40 n n 
C09 H16 A1D8I sing 41 n n 
#
_atom_sites.entry_id                     8ZB8 
_atom_sites.fract_transf_matrix[1][1]    0.00947 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.006321 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.00554 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
G 5 GTP A 1 501 501 GTP GTP . 
H 6 MG A 1 502 502 MG MG . 
I 7 CA A 1 503 503 CA CA . 
J 8 GOL A 1 504 504 GOL GOL . 
K 9 GDP B 1 501 501 GDP GDP . 
L 6 MG B 1 502 502 MG MG . 
M 10 MES B 1 503 503 MES MES . 
N 11 A1D8I B 1 504 601 A1D8I KKK . 
O 5 GTP C 1 501 501 GTP GTP . 
P 6 MG C 1 502 502 MG MG . 
Q 7 CA C 1 503 503 CA CA . 
R 9 GDP D 1 501 501 GDP GDP . 
S 11 A1D8I D 1 502 601 A1D8I KKK . 
T 12 ACP F 1 401 401 ACP ACP . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 C C10 A1D8I . . . N 11 17.215 -63.377 -44.973 1 51.76 ? C10 A1D8I 504 B 1 
HETATM 2 C C11 A1D8I . . . N 11 17.364 -63.911 -46.273 1 48.82 ? C11 A1D8I 504 B 1 
HETATM 3 C C12 A1D8I . . . N 11 17.792 -65.191 -46.417 1 49.59 ? C12 A1D8I 504 B 1 
HETATM 4 C C13 A1D8I . . . N 11 18.097 -65.961 -45.255 1 50.33 ? C13 A1D8I 504 B 1 
HETATM 5 C C14 A1D8I . . . N 11 17.845 -65.426 -47.815 1 49.98 ? C14 A1D8I 504 B 1 
HETATM 6 C C15 A1D8I . . . N 11 17.446 -64.266 -48.433 1 44.97 ? C15 A1D8I 504 B 1 
HETATM 7 C C17 A1D8I . . . N 11 16.705 -62.042 -47.742 1 42.03 ? C17 A1D8I 504 B 1 
HETATM 8 C C18 A1D8I . . . N 11 19.654 -66.617 -42.548 1 41.41 ? C18 A1D8I 504 B 1 
HETATM 9 C C20 A1D8I . . . N 11 13.596 -66.279 -42.497 1 47.8 ? C20 A1D8I 504 B 1 
HETATM 10 C C21 A1D8I . . . N 11 13.766 -66.361 -41.071 1 39.99 ? C21 A1D8I 504 B 1 
HETATM 11 C C22 A1D8I . . . N 11 17.718 -66.532 -38.054 1 42.25 ? C22 A1D8I 504 B 1 
HETATM 12 C C02 A1D8I . . . N 11 17.053 -66.45 -39.403 1 47.14 ? C02 A1D8I 504 B 1 
HETATM 13 C C04 A1D8I . . . N 11 15.218 -66.381 -40.776 1 37.07 ? C04 A1D8I 504 B 1 
HETATM 14 C C05 A1D8I . . . N 11 16.034 -66.317 -41.872 1 38.39 ? C05 A1D8I 504 B 1 
HETATM 15 C C06 A1D8I . . . N 11 17.402 -66.33 -41.673 1 35.7 ? C06 A1D8I 504 B 1 
HETATM 16 C C08 A1D8I . . . N 11 17.961 -65.447 -43.97 1 43.12 ? C08 A1D8I 504 B 1 
HETATM 17 C C09 A1D8I . . . N 11 17.52 -64.133 -43.843 1 52.41 ? C09 A1D8I 504 B 1 
HETATM 18 N N01 A1D8I . . . N 11 17.866 -66.403 -40.439 1 39.64 ? N01 A1D8I 504 B 1 
HETATM 19 N N03 A1D8I . . . N 11 15.74 -66.45 -39.521 1 45.79 ? N03 A1D8I 504 B 1 
HETATM 20 N N07 A1D8I . . . N 11 18.277 -66.267 -42.805 1 40.88 ? N07 A1D8I 504 B 1 
HETATM 21 N N16 A1D8I . . . N 11 17.173 -63.382 -47.492 1 45.13 ? N16 A1D8I 504 B 1 
HETATM 22 S S19 A1D8I . . . N 11 15.12 -66.244 -43.278 1 46.47 ? S19 A1D8I 504 B 1 
#
_model_server_stats.io_time_ms              16 
_model_server_stats.parse_time_ms           12 
_model_server_stats.create_model_time_ms    27 
_model_server_stats.query_time_ms           291 
_model_server_stats.encode_time_ms          4 
_model_server_stats.element_count           22 
#