data_8ZC8 # _model_server_result.job_id 9dL15KLodSeHyoyXRYzjHg _model_server_result.datetime_utc '2024-12-01 01:38:04' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 8zc8 # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"C","auth_seq_id":301}' # _entry.id 8ZC8 # _exptl.entry_id 8ZC8 _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 384.411 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description S-ADENOSYL-L-HOMOCYSTEINE _entity.pdbx_number_of_molecules 2 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 120 _cell.entry_id 8ZC8 _cell.length_a 113.953 _cell.length_b 113.953 _cell.length_c 108.771 _cell.Z_PDB 12 _cell.pdbx_unique_axis ? # _symmetry.entry_id 8ZC8 _symmetry.cell_setting ? _symmetry.Int_Tables_number 152 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 31 2 1' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 2 C N N ? 2 D N N # _chem_comp.formula 'C14 H20 N6 O5 S' _chem_comp.formula_weight 384.411 _chem_comp.id SAH _chem_comp.mon_nstd_flag . _chem_comp.name S-ADENOSYL-L-HOMOCYSTEINE _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag N CA SAH sing 324 n n N HN1 SAH sing 325 n n N HN2 SAH sing 326 n n CA CB SAH sing 327 n n CA C SAH sing 328 n n CA HA SAH sing 329 n n CB CG SAH sing 330 n n CB HB1 SAH sing 331 n n CB HB2 SAH sing 332 n n CG SD SAH sing 333 n n CG HG1 SAH sing 334 n n CG HG2 SAH sing 335 n n SD C5' SAH sing 336 n n C O SAH doub 337 n n C OXT SAH sing 338 n n OXT HXT SAH sing 339 n n C5' C4' SAH sing 340 n n C5' "H5'1" SAH sing 341 n n C5' "H5'2" SAH sing 342 n n C4' O4' SAH sing 343 n n C4' C3' SAH sing 344 n n C4' H4' SAH sing 345 n n O4' C1' SAH sing 346 n n C3' O3' SAH sing 347 n n C3' C2' SAH sing 348 n n C3' H3' SAH sing 349 n n O3' HO3' SAH sing 350 n n C2' O2' SAH sing 351 n n C2' C1' SAH sing 352 n n C2' H2' SAH sing 353 n n O2' HO2' SAH sing 354 n n C1' N9 SAH sing 355 n n C1' H1' SAH sing 356 n n N9 C8 SAH sing 357 n y N9 C4 SAH sing 358 n y C8 N7 SAH doub 359 n y C8 H8 SAH sing 360 n n N7 C5 SAH sing 361 n y C5 C6 SAH sing 362 n y C5 C4 SAH doub 363 n y C6 N6 SAH sing 364 n n C6 N1 SAH doub 365 n y N6 HN61 SAH sing 366 n n N6 HN62 SAH sing 367 n n N1 C2 SAH sing 368 n y C2 N3 SAH doub 369 n y C2 H2 SAH sing 370 n n N3 C4 SAH sing 371 n y # _atom_sites.entry_id 8ZC8 _atom_sites.fract_transf_matrix[1][1] 0.008776 _atom_sites.fract_transf_matrix[1][2] 0.005067 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.010133 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.009194 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 2 SAH A 1 301 301 SAH SAH . D 2 SAH B 1 301 301 SAH SAH . E 3 MQA B 1 302 302 MQA MQA . F 4 HOH A 1 401 4 HOH HOH . F 4 HOH A 2 402 1 HOH HOH . G 4 HOH B 1 401 5 HOH HOH . G 4 HOH B 2 402 3 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 N N SAH . . . C 2 34.287 -15.773 12.241 1 62.11 ? N SAH 301 A 1 HETATM 2 C CA SAH . . . C 2 32.928 -16.36 12.148 1 66.24 ? CA SAH 301 A 1 HETATM 3 C CB SAH . . . C 2 31.831 -15.304 12.299 1 62.72 ? CB SAH 301 A 1 HETATM 4 C CG SAH . . . C 2 32.25 -13.898 11.959 1 62.65 ? CG SAH 301 A 1 HETATM 5 S SD SAH . . . C 2 30.825 -12.793 11.957 1 61.75 ? SD SAH 301 A 1 HETATM 6 C C SAH . . . C 2 32.784 -17.004 10.777 1 62.97 ? C SAH 301 A 1 HETATM 7 O O SAH . . . C 2 31.886 -17.84 10.62 1 73.09 ? O SAH 301 A 1 HETATM 8 O OXT SAH . . . C 2 33.562 -16.634 9.936 1 56.71 ? OXT SAH 301 A 1 HETATM 9 C C5' SAH . . . C 2 30.994 -11.954 13.549 1 68.69 ? C5' SAH 301 A 1 HETATM 10 C C4' SAH . . . C 2 30.888 -12.871 14.741 1 71.24 ? C4' SAH 301 A 1 HETATM 11 O O4' SAH . . . C 2 31.228 -12.139 15.939 1 69.32 ? O4' SAH 301 A 1 HETATM 12 C C3' SAH . . . C 2 29.495 -13.449 14.983 1 70.61 ? C3' SAH 301 A 1 HETATM 13 O O3' SAH . . . C 2 29.586 -14.802 15.4 1 70.19 ? O3' SAH 301 A 1 HETATM 14 C C2' SAH . . . C 2 28.969 -12.605 16.142 1 66.41 ? C2' SAH 301 A 1 HETATM 15 O O2' SAH . . . C 2 28 -13.282 16.909 1 74.07 ? O2' SAH 301 A 1 HETATM 16 C C1' SAH . . . C 2 30.258 -12.411 16.919 1 68.43 ? C1' SAH 301 A 1 HETATM 17 N N9 SAH . . . C 2 30.226 -11.3 17.857 1 71.09 ? N9 SAH 301 A 1 HETATM 18 C C8 SAH . . . C 2 29.865 -10.005 17.593 1 75.19 ? C8 SAH 301 A 1 HETATM 19 N N7 SAH . . . C 2 29.949 -9.223 18.639 1 78.96 ? N7 SAH 301 A 1 HETATM 20 C C5 SAH . . . C 2 30.392 -10.056 19.655 1 74.36 ? C5 SAH 301 A 1 HETATM 21 C C6 SAH . . . C 2 30.681 -9.824 21.01 1 74.68 ? C6 SAH 301 A 1 HETATM 22 N N6 SAH . . . C 2 30.554 -8.639 21.596 1 79.21 ? N6 SAH 301 A 1 HETATM 23 N N1 SAH . . . C 2 31.108 -10.876 21.744 1 75.17 ? N1 SAH 301 A 1 HETATM 24 C C2 SAH . . . C 2 31.232 -12.066 21.148 1 70.38 ? C2 SAH 301 A 1 HETATM 25 N N3 SAH . . . C 2 30.989 -12.402 19.886 1 69.71 ? N3 SAH 301 A 1 HETATM 26 C C4 SAH . . . C 2 30.571 -11.34 19.183 1 70.47 ? C4 SAH 301 A 1 # _model_server_stats.io_time_ms 60 _model_server_stats.parse_time_ms 10 _model_server_stats.create_model_time_ms 8 _model_server_stats.query_time_ms 211 _model_server_stats.encode_time_ms 2 _model_server_stats.element_count 26 #