data_8ZC8 # _model_server_result.job_id Buz1xorOlMpOiParGPaBQw _model_server_result.datetime_utc '2024-12-01 01:44:56' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 8zc8 # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"E","auth_seq_id":302}' # _entry.id 8ZC8 # _exptl.entry_id 8ZC8 _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 349.339 _entity.id 3 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description "[(1aS,8S,8aR,8bS)-6,8a-dimethoxy-5-methyl-4,7-dioxo-1,1a,2,4,7,8,8a,8b-octahydroazireno[2',3':3,4]pyrrolo[1,2-a]indol-8-yl]methyl carbamate" _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 120 _cell.entry_id 8ZC8 _cell.length_a 113.953 _cell.length_b 113.953 _cell.length_c 108.771 _cell.Z_PDB 12 _cell.pdbx_unique_axis ? # _symmetry.entry_id 8ZC8 _symmetry.cell_setting ? _symmetry.Int_Tables_number 152 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 31 2 1' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 3 _struct_asym.id E _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # _chem_comp.formula 'C16 H19 N3 O6' _chem_comp.formula_weight 349.339 _chem_comp.id MQA _chem_comp.mon_nstd_flag . _chem_comp.name "[(1aS,8S,8aR,8bS)-6,8a-dimethoxy-5-methyl-4,7-dioxo-1,1a,2,4,7,8,8a,8b-octahydroazireno[2',3':3,4]pyrrolo[1,2-a]indol-8-yl]methyl carbamate" _chem_comp.type non-polymer _chem_comp.pdbx_synonyms 'Mitomycin A' # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C9A C1 MQA sing 237 n n C1 N2 MQA sing 238 n n C1 C2 MQA sing 239 n n C1 H1 MQA sing 240 n n C3 C2 MQA sing 241 n n N2 C2 MQA sing 242 n n C2 H2 MQA sing 243 n n N4 C3 MQA sing 244 n n C3 H3 MQA sing 245 n n C3 H3A MQA sing 246 n n C6 C5 MQA sing 247 n n C4A C5 MQA sing 248 n n C5 O5 MQA doub 249 n n C7 C6 MQA doub 250 n n C6 CM6 MQA sing 251 n n O7 C7 MQA sing 252 n n C8 C7 MQA sing 253 n n O8 C8 MQA doub 254 n n C8 C8A MQA sing 255 n n C8A C9 MQA sing 256 n n C9 C10 MQA sing 257 n n C9 C9A MQA sing 258 n n C9 H9 MQA sing 259 n n O10 C10 MQA sing 260 n n C10 H10 MQA sing 261 n n C10 H10A MQA sing 262 n n O11 C11 MQA doub 263 n n C11 O10 MQA sing 264 n n C11 N12 MQA sing 265 n n CM6 HM6 MQA sing 266 n n CM6 HM6A MQA sing 267 n n CM6 HM6B MQA sing 268 n n O7 C24 MQA sing 269 n n C24 H24 MQA sing 270 n n C24 H24A MQA sing 271 n n C24 H24B MQA sing 272 n n C8A C4A MQA doub 273 n n C4A N4 MQA sing 274 n n C9A N4 MQA sing 275 n n O24 C9A MQA sing 276 n n C25 O24 MQA sing 277 n n C25 H25 MQA sing 278 n n C25 H25A MQA sing 279 n n C25 H25B MQA sing 280 n n N2 HN2 MQA sing 281 n n N12 HN12 MQA sing 282 n n N12 HN1A MQA sing 283 n n # _atom_sites.entry_id 8ZC8 _atom_sites.fract_transf_matrix[1][1] 0.008776 _atom_sites.fract_transf_matrix[1][2] 0.005067 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.010133 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.009194 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 2 SAH A 1 301 301 SAH SAH . D 2 SAH B 1 301 301 SAH SAH . E 3 MQA B 1 302 302 MQA MQA . F 4 HOH A 1 401 4 HOH HOH . F 4 HOH A 2 402 1 HOH HOH . G 4 HOH B 1 401 5 HOH HOH . G 4 HOH B 2 402 3 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 MQA . . . E 3 74.712 0.645 11.107 1 102.88 ? C1 MQA 302 B 1 HETATM 2 C C2 MQA . . . E 3 73.352 0.745 11.708 1 98.78 ? C2 MQA 302 B 1 HETATM 3 C C3 MQA . . . E 3 73.61 0.469 13.227 1 100.39 ? C3 MQA 302 B 1 HETATM 4 C C5 MQA . . . E 3 73.768 -2.647 13.593 1 103.87 ? C5 MQA 302 B 1 HETATM 5 C C6 MQA . . . E 3 74.18 -4.152 13.422 1 99.9 ? C6 MQA 302 B 1 HETATM 6 C C7 MQA . . . E 3 75.544 -4.56 12.719 1 105.11 ? C7 MQA 302 B 1 HETATM 7 C C8 MQA . . . E 3 76.498 -3.447 12.168 1 109.36 ? C8 MQA 302 B 1 HETATM 8 C C9 MQA . . . E 3 76.782 -0.502 11.965 1 106 ? C9 MQA 302 B 1 HETATM 9 C C10 MQA . . . E 3 77.442 -0.455 10.631 1 102.88 ? C10 MQA 302 B 1 HETATM 10 C C11 MQA . . . E 3 79.602 0.079 11.791 1 112.95 ? C11 MQA 302 B 1 HETATM 11 O O5 MQA . . . E 3 72.751 -2.303 14.133 1 102.81 ? O5 MQA 302 B 1 HETATM 12 C CM6 MQA . . . E 3 73.249 -5.258 13.952 1 94.97 ? CM6 MQA 302 B 1 HETATM 13 O O7 MQA . . . E 3 75.971 -5.921 12.58 1 106.65 ? O7 MQA 302 B 1 HETATM 14 C C24 MQA . . . E 3 76.49 -6.51 13.771 1 106.75 ? C24 MQA 302 B 1 HETATM 15 O O8 MQA . . . E 3 77.517 -3.798 11.635 1 111.42 ? O8 MQA 302 B 1 HETATM 16 C C4A MQA . . . E 3 74.712 -1.601 13.103 1 104.28 ? C4A MQA 302 B 1 HETATM 17 C C8A MQA . . . E 3 76.128 -1.975 12.313 1 106.52 ? C8A MQA 302 B 1 HETATM 18 N N4 MQA . . . E 3 74.696 -0.355 12.991 1 104.65 ? N4 MQA 302 B 1 HETATM 19 C C9A MQA . . . E 3 75.641 0.456 12.206 1 106.34 ? C9A MQA 302 B 1 HETATM 20 O O24 MQA . . . E 3 76.016 1.658 12.935 1 102.03 ? O24 MQA 302 B 1 HETATM 21 C C25 MQA . . . E 3 77.104 2.439 12.482 1 98.26 ? C25 MQA 302 B 1 HETATM 22 N N2 MQA . . . E 3 73.536 0.066 10.409 1 94.1 ? N2 MQA 302 B 1 HETATM 23 O O10 MQA . . . E 3 78.778 0.098 10.616 1 104.63 ? O10 MQA 302 B 1 HETATM 24 O O11 MQA . . . E 3 79.666 -0.894 12.491 1 114.43 ? O11 MQA 302 B 1 HETATM 25 N N12 MQA . . . E 3 80.394 1.278 12.138 1 115.06 ? N12 MQA 302 B 1 # _model_server_stats.io_time_ms 17 _model_server_stats.parse_time_ms 12 _model_server_stats.create_model_time_ms 5 _model_server_stats.query_time_ms 287 _model_server_stats.encode_time_ms 8 _model_server_stats.element_count 25 #