data_8ZC9
#
_model_server_result.job_id            dAPquBib8sFk8IyVXDYzQg 
_model_server_result.datetime_utc      '2024-11-22 10:50:47' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          8zc9 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"I","auth_seq_id":1101}' 
#
_entry.id    8ZC9 
#
_exptl.entry_id    8ZC9 
_exptl.method      'ELECTRON MICROSCOPY' 
#
_entity.details                     ? 
_entity.formula_weight              663.425 
_entity.id                          3 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            NICOTINAMIDE-ADENINE-DINUCLEOTIDE 
_entity.pdbx_number_of_molecules    4 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          90 
_cell.angle_gamma         90 
_cell.entry_id            8ZC9 
_cell.length_a            1 
_cell.length_b            1 
_cell.length_c            1 
_cell.Z_PDB               ? 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 8ZC9 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        1 
_symmetry.space_group_name_Hall    ? 
_symmetry.space_group_name_H-M     'P 1' 
#
_pdbx_struct_assembly.method_details        ? 
_pdbx_struct_assembly.oligomeric_details    hexameric 
_pdbx_struct_assembly.oligomeric_count      6 
_pdbx_struct_assembly.details               author_defined_assembly 
_pdbx_struct_assembly.id                    1 
#
_pdbx_struct_assembly_gen.asym_id_list       A,B,C,D,E,F,G,H,I,J 
_pdbx_struct_assembly_gen.assembly_id        1 
_pdbx_struct_assembly_gen.oper_expression    1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    ? 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
loop_
_struct_asym.details
_struct_asym.entity_id
_struct_asym.id
_struct_asym.pdbx_modified
_struct_asym.pdbx_blank_PDB_chainid_flag
? 3 G N N 
? 3 H N N 
? 3 I N N 
? 3 J N N 
#
_chem_comp.formula           'C21 H27 N7 O14 P2' 
_chem_comp.formula_weight    663.425 
_chem_comp.id                NAD 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              NICOTINAMIDE-ADENINE-DINUCLEOTIDE 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     ? 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
PA O1A NAD doub 235 n n 
PA O2A NAD sing 236 n n 
PA O5B NAD sing 237 n n 
PA O3 NAD sing 238 n n 
O2A HOA2 NAD sing 239 n n 
O5B C5B NAD sing 240 n n 
C5B C4B NAD sing 241 n n 
C5B H51A NAD sing 242 n n 
C5B H52A NAD sing 243 n n 
C4B O4B NAD sing 244 n n 
C4B C3B NAD sing 245 n n 
C4B H4B NAD sing 246 n n 
O4B C1B NAD sing 247 n n 
C3B O3B NAD sing 248 n n 
C3B C2B NAD sing 249 n n 
C3B H3B NAD sing 250 n n 
O3B HO3A NAD sing 251 n n 
C2B O2B NAD sing 252 n n 
C2B C1B NAD sing 253 n n 
C2B H2B NAD sing 254 n n 
O2B HO2A NAD sing 255 n n 
C1B N9A NAD sing 256 n n 
C1B H1B NAD sing 257 n n 
N9A C8A NAD sing 258 n y 
N9A C4A NAD sing 259 n y 
C8A N7A NAD doub 260 n y 
C8A H8A NAD sing 261 n n 
N7A C5A NAD sing 262 n y 
C5A C6A NAD sing 263 n y 
C5A C4A NAD doub 264 n y 
C6A N6A NAD sing 265 n n 
C6A N1A NAD doub 266 n y 
N6A H61A NAD sing 267 n n 
N6A H62A NAD sing 268 n n 
N1A C2A NAD sing 269 n y 
C2A N3A NAD doub 270 n y 
C2A H2A NAD sing 271 n n 
N3A C4A NAD sing 272 n y 
O3 PN NAD sing 273 n n 
PN O1N NAD doub 274 n n 
PN O2N NAD sing 275 n n 
PN O5D NAD sing 276 n n 
O5D C5D NAD sing 277 n n 
C5D C4D NAD sing 278 n n 
C5D H51N NAD sing 279 n n 
C5D H52N NAD sing 280 n n 
C4D O4D NAD sing 281 n n 
C4D C3D NAD sing 282 n n 
C4D H4D NAD sing 283 n n 
O4D C1D NAD sing 284 n n 
C3D O3D NAD sing 285 n n 
C3D C2D NAD sing 286 n n 
C3D H3D NAD sing 287 n n 
O3D HO3N NAD sing 288 n n 
C2D O2D NAD sing 289 n n 
C2D C1D NAD sing 290 n n 
C2D H2D NAD sing 291 n n 
O2D HO2N NAD sing 292 n n 
C1D N1N NAD sing 293 n n 
C1D H1D NAD sing 294 n n 
N1N C2N NAD sing 295 n y 
N1N C6N NAD doub 296 n y 
C2N C3N NAD doub 297 n y 
C2N H2N NAD sing 298 n n 
C3N C7N NAD sing 299 n n 
C3N C4N NAD sing 300 n y 
C7N O7N NAD doub 301 n n 
C7N N7N NAD sing 302 n n 
N7N H71N NAD sing 303 n n 
N7N H72N NAD sing 304 n n 
C4N C5N NAD doub 305 n y 
C4N H4N NAD sing 306 n n 
C5N C6N NAD sing 307 n y 
C5N H5N NAD sing 308 n n 
C6N H6N NAD sing 309 n n 
#
_atom_sites.entry_id                     8ZC9 
_atom_sites.fract_transf_matrix[1][1]    1 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    1 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    1 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
G 3 NAD B 1 1101 1101 NAD NAD . 
H 3 NAD A 1 1101 1101 NAD NAD . 
I 3 NAD E 1 1101 1101 NAD NAD . 
J 3 NAD D 1 1101 1101 NAD NAD . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 P PA NAD . . . I 3 213.169 243.624 193.668 1 103.8 ? PA NAD 1101 E 1 
HETATM 2 O O1A NAD . . . I 3 214.562 244.032 193.232 1 103.61 ? O1A NAD 1101 E 1 
HETATM 3 O O2A NAD . . . I 3 213.251 242.358 194.5 1 105 ? O2A NAD 1101 E 1 
HETATM 4 O O5B NAD . . . I 3 212.236 243.357 192.379 1 103.87 ? O5B NAD 1101 E 1 
HETATM 5 C C5B NAD . . . I 3 212.555 242.29 191.554 1 100.98 ? C5B NAD 1101 E 1 
HETATM 6 C C4B NAD . . . I 3 213.156 242.751 190.168 1 91.48 ? C4B NAD 1101 E 1 
HETATM 7 O O4B NAD . . . I 3 212.052 243.324 189.223 1 101.16 ? O4B NAD 1101 E 1 
HETATM 8 C C3B NAD . . . I 3 213.955 243.741 190.242 1 90.66 ? C3B NAD 1101 E 1 
HETATM 9 O O3B NAD . . . I 3 215.295 243.304 190.65 1 102.54 ? O3B NAD 1101 E 1 
HETATM 10 C C2B NAD . . . I 3 214.001 244.343 188.677 1 98.81 ? C2B NAD 1101 E 1 
HETATM 11 O O2B NAD . . . I 3 215.204 243.855 188.029 1 103.14 ? O2B NAD 1101 E 1 
HETATM 12 C C1B NAD . . . I 3 212.964 243.873 188.076 1 104.97 ? C1B NAD 1101 E 1 
HETATM 13 N N9A NAD . . . I 3 212.225 244.865 187.22 1 106.54 ? N9A NAD 1101 E 1 
HETATM 14 C C8A NAD . . . I 3 212.012 245.078 185.912 1 103.16 ? C8A NAD 1101 E 1 
HETATM 15 N N7A NAD . . . I 3 211.212 246.168 185.78 1 91.94 ? N7A NAD 1101 E 1 
HETATM 16 C C5A NAD . . . I 3 210.927 246.623 187.019 1 88.67 ? C5A NAD 1101 E 1 
HETATM 17 C C6A NAD . . . I 3 210.171 247.681 187.444 1 96.24 ? C6A NAD 1101 E 1 
HETATM 18 N N6A NAD . . . I 3 209.414 248.686 186.733 1 104.51 ? N6A NAD 1101 E 1 
HETATM 19 N N1A NAD . . . I 3 210.043 247.924 188.732 1 99.62 ? N1A NAD 1101 E 1 
HETATM 20 C C2A NAD . . . I 3 210.663 247.119 189.639 1 95.92 ? C2A NAD 1101 E 1 
HETATM 21 N N3A NAD . . . I 3 211.403 246.081 189.227 1 94.7 ? N3A NAD 1101 E 1 
HETATM 22 C C4A NAD . . . I 3 211.535 245.828 187.913 1 96.25 ? C4A NAD 1101 E 1 
HETATM 23 O O3 NAD . . . I 3 212.5 244.809 194.563 1 104.52 ? O3 NAD 1101 E 1 
HETATM 24 P PN NAD . . . I 3 210.895 244.782 195.064 1 126.77 ? PN NAD 1101 E 1 
HETATM 25 O O1N NAD . . . I 3 210.828 244.708 196.621 1 108.08 ? O1N NAD 1101 E 1 
HETATM 26 O O2N NAD . . . I 3 210.182 243.533 194.446 1 105.04 ? O2N NAD 1101 E 1 
HETATM 27 O O5D NAD . . . I 3 210.141 246.147 194.554 1 111.64 ? O5D NAD 1101 E 1 
HETATM 28 C C5D NAD . . . I 3 209.764 246.255 193.119 1 106.36 ? C5D NAD 1101 E 1 
HETATM 29 C C4D NAD . . . I 3 209.124 247.626 192.884 1 106.95 ? C4D NAD 1101 E 1 
HETATM 30 O O4D NAD . . . I 3 207.912 247.764 193.833 1 110.32 ? O4D NAD 1101 E 1 
HETATM 31 C C3D NAD . . . I 3 209.93 248.593 193.174 1 107.41 ? C3D NAD 1101 E 1 
HETATM 32 O O3D NAD . . . I 3 209.898 249.598 192.099 1 106.69 ? O3D NAD 1101 E 1 
HETATM 33 C C2D NAD . . . I 3 209.4 249.272 194.564 1 105.65 ? C2D NAD 1101 E 1 
HETATM 34 O O2D NAD . . . I 3 209.726 250.74 194.572 1 106.58 ? O2D NAD 1101 E 1 
HETATM 35 C C1D NAD . . . I 3 208.121 249.109 194.551 1 106.71 ? C1D NAD 1101 E 1 
HETATM 36 N N1N NAD . . . I 3 207.484 249.057 195.935 1 108.29 ? N1N NAD 1101 E 1 
HETATM 37 C C2N NAD . . . I 3 207.666 247.995 196.76 1 105.12 ? C2N NAD 1101 E 1 
HETATM 38 C C3N NAD . . . I 3 207.059 247.969 198.042 1 108.03 ? C3N NAD 1101 E 1 
HETATM 39 C C7N NAD . . . I 3 207.269 246.761 199.003 1 107.08 ? C7N NAD 1101 E 1 
HETATM 40 O O7N NAD . . . I 3 206.467 246.553 199.889 1 108.08 ? O7N NAD 1101 E 1 
HETATM 41 N N7N NAD . . . I 3 208.374 245.92 198.865 1 104.19 ? N7N NAD 1101 E 1 
HETATM 42 C C4N NAD . . . I 3 206.283 248.998 198.438 1 106.83 ? C4N NAD 1101 E 1 
HETATM 43 C C5N NAD . . . I 3 206.087 250.072 197.605 1 106.28 ? C5N NAD 1101 E 1 
HETATM 44 C C6N NAD . . . I 3 206.695 250.09 196.341 1 103.85 ? C6N NAD 1101 E 1 
HETATM 45 H H51A NAD . . . I 3 211.652 241.714 191.365 1 100.07 ? H51A NAD 1101 E 1 
HETATM 46 H H52A NAD . . . I 3 213.315 241.623 192.084 1 100.93 ? H52A NAD 1101 E 1 
HETATM 47 H H4B NAD . . . I 3 213.669 241.895 189.668 1 98.53 ? H4B NAD 1101 E 1 
HETATM 48 H H3B NAD . . . I 3 213.579 244.489 190.905 1 100.47 ? H3B NAD 1101 E 1 
HETATM 49 H HO3A NAD . . . I 3 215.245 242.454 191.022 1 100.98 ? HO3A NAD 1101 E 1 
HETATM 50 H H2B NAD . . . I 3 214.005 245.509 188.696 1 100.33 ? H2B NAD 1101 E 1 
HETATM 51 H HO2A NAD . . . I 3 215.701 243.231 188.663 1 99.21 ? HO2A NAD 1101 E 1 
HETATM 52 H H1B NAD . . . I 3 213.273 243.023 187.455 1 99.93 ? H1B NAD 1101 E 1 
HETATM 53 H H8A NAD . . . I 3 212.432 244.457 185.064 1 99.19 ? H8A NAD 1101 E 1 
HETATM 54 H H61A NAD . . . I 3 209 249.46 187.239 1 101.61 ? H61A NAD 1101 E 1 
HETATM 55 H H62A NAD . . . I 3 209.301 248.619 185.77 1 101.14 ? H62A NAD 1101 E 1 
HETATM 56 H H2A NAD . . . I 3 210.559 247.319 190.702 1 100.83 ? H2A NAD 1101 E 1 
HETATM 57 H H51N NAD . . . I 3 208.993 245.43 192.865 1 101.64 ? H51N NAD 1101 E 1 
HETATM 58 H H52N NAD . . . I 3 210.651 246.122 192.485 1 101.56 ? H52N NAD 1101 E 1 
HETATM 59 H H4D NAD . . . I 3 208.807 247.715 191.896 1 101.76 ? H4D NAD 1101 E 1 
HETATM 60 H H3D NAD . . . I 3 211.019 248.204 193.322 1 101.96 ? H3D NAD 1101 E 1 
HETATM 61 H HO3N NAD . . . I 3 209.007 249.95 192.018 1 101.73 ? HO3N NAD 1101 E 1 
HETATM 62 H H2D NAD . . . I 3 209.907 248.751 195.449 1 101.06 ? H2D NAD 1101 E 1 
HETATM 63 H HO2N NAD . . . I 3 210.618 250.853 194.465 1 101.79 ? HO2N NAD 1101 E 1 
HETATM 64 H H1D NAD . . . I 3 207.649 249.933 193.947 1 101.43 ? H1D NAD 1101 E 1 
HETATM 65 H H2N NAD . . . I 3 208.3 247.159 196.432 1 100.85 ? H2N NAD 1101 E 1 
HETATM 66 H H71N NAD . . . I 3 208.497 245.134 199.507 1 102.27 ? H71N NAD 1101 E 1 
HETATM 67 H H72N NAD . . . I 3 209.091 246.092 198.097 1 101.16 ? H72N NAD 1101 E 1 
HETATM 68 H H4N NAD . . . I 3 205.807 248.977 199.437 1 101.95 ? H4N NAD 1101 E 1 
HETATM 69 H H5N NAD . . . I 3 205.479 250.883 197.915 1 101.99 ? H5N NAD 1101 E 1 
HETATM 70 H H6N NAD . . . I 3 206.234 251.084 196.14 1 101.09 ? H6N NAD 1101 E 1 
#
_model_server_stats.io_time_ms              44 
_model_server_stats.parse_time_ms           12 
_model_server_stats.create_model_time_ms    36 
_model_server_stats.query_time_ms           305 
_model_server_stats.encode_time_ms          2 
_model_server_stats.element_count           70 
#