data_8ZC9
#
_model_server_result.job_id            JhZBI7ahP4WfHQgvbyverA 
_model_server_result.datetime_utc      '2024-11-22 10:13:11' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          8zc9 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"J","auth_seq_id":1101}' 
#
_entry.id    8ZC9 
#
_exptl.entry_id    8ZC9 
_exptl.method      'ELECTRON MICROSCOPY' 
#
_entity.details                     ? 
_entity.formula_weight              663.425 
_entity.id                          3 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            NICOTINAMIDE-ADENINE-DINUCLEOTIDE 
_entity.pdbx_number_of_molecules    4 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          90 
_cell.angle_gamma         90 
_cell.entry_id            8ZC9 
_cell.length_a            1 
_cell.length_b            1 
_cell.length_c            1 
_cell.Z_PDB               ? 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 8ZC9 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        1 
_symmetry.space_group_name_Hall    ? 
_symmetry.space_group_name_H-M     'P 1' 
#
_pdbx_struct_assembly.method_details        ? 
_pdbx_struct_assembly.oligomeric_details    hexameric 
_pdbx_struct_assembly.oligomeric_count      6 
_pdbx_struct_assembly.details               author_defined_assembly 
_pdbx_struct_assembly.id                    1 
#
_pdbx_struct_assembly_gen.asym_id_list       A,B,C,D,E,F,G,H,I,J 
_pdbx_struct_assembly_gen.assembly_id        1 
_pdbx_struct_assembly_gen.oper_expression    1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    ? 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
loop_
_struct_asym.details
_struct_asym.entity_id
_struct_asym.id
_struct_asym.pdbx_modified
_struct_asym.pdbx_blank_PDB_chainid_flag
? 3 G N N 
? 3 H N N 
? 3 I N N 
? 3 J N N 
#
_chem_comp.formula           'C21 H27 N7 O14 P2' 
_chem_comp.formula_weight    663.425 
_chem_comp.id                NAD 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              NICOTINAMIDE-ADENINE-DINUCLEOTIDE 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     ? 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
PA O1A NAD doub 235 n n 
PA O2A NAD sing 236 n n 
PA O5B NAD sing 237 n n 
PA O3 NAD sing 238 n n 
O2A HOA2 NAD sing 239 n n 
O5B C5B NAD sing 240 n n 
C5B C4B NAD sing 241 n n 
C5B H51A NAD sing 242 n n 
C5B H52A NAD sing 243 n n 
C4B O4B NAD sing 244 n n 
C4B C3B NAD sing 245 n n 
C4B H4B NAD sing 246 n n 
O4B C1B NAD sing 247 n n 
C3B O3B NAD sing 248 n n 
C3B C2B NAD sing 249 n n 
C3B H3B NAD sing 250 n n 
O3B HO3A NAD sing 251 n n 
C2B O2B NAD sing 252 n n 
C2B C1B NAD sing 253 n n 
C2B H2B NAD sing 254 n n 
O2B HO2A NAD sing 255 n n 
C1B N9A NAD sing 256 n n 
C1B H1B NAD sing 257 n n 
N9A C8A NAD sing 258 n y 
N9A C4A NAD sing 259 n y 
C8A N7A NAD doub 260 n y 
C8A H8A NAD sing 261 n n 
N7A C5A NAD sing 262 n y 
C5A C6A NAD sing 263 n y 
C5A C4A NAD doub 264 n y 
C6A N6A NAD sing 265 n n 
C6A N1A NAD doub 266 n y 
N6A H61A NAD sing 267 n n 
N6A H62A NAD sing 268 n n 
N1A C2A NAD sing 269 n y 
C2A N3A NAD doub 270 n y 
C2A H2A NAD sing 271 n n 
N3A C4A NAD sing 272 n y 
O3 PN NAD sing 273 n n 
PN O1N NAD doub 274 n n 
PN O2N NAD sing 275 n n 
PN O5D NAD sing 276 n n 
O5D C5D NAD sing 277 n n 
C5D C4D NAD sing 278 n n 
C5D H51N NAD sing 279 n n 
C5D H52N NAD sing 280 n n 
C4D O4D NAD sing 281 n n 
C4D C3D NAD sing 282 n n 
C4D H4D NAD sing 283 n n 
O4D C1D NAD sing 284 n n 
C3D O3D NAD sing 285 n n 
C3D C2D NAD sing 286 n n 
C3D H3D NAD sing 287 n n 
O3D HO3N NAD sing 288 n n 
C2D O2D NAD sing 289 n n 
C2D C1D NAD sing 290 n n 
C2D H2D NAD sing 291 n n 
O2D HO2N NAD sing 292 n n 
C1D N1N NAD sing 293 n n 
C1D H1D NAD sing 294 n n 
N1N C2N NAD sing 295 n y 
N1N C6N NAD doub 296 n y 
C2N C3N NAD doub 297 n y 
C2N H2N NAD sing 298 n n 
C3N C7N NAD sing 299 n n 
C3N C4N NAD sing 300 n y 
C7N O7N NAD doub 301 n n 
C7N N7N NAD sing 302 n n 
N7N H71N NAD sing 303 n n 
N7N H72N NAD sing 304 n n 
C4N C5N NAD doub 305 n y 
C4N H4N NAD sing 306 n n 
C5N C6N NAD sing 307 n y 
C5N H5N NAD sing 308 n n 
C6N H6N NAD sing 309 n n 
#
_atom_sites.entry_id                     8ZC9 
_atom_sites.fract_transf_matrix[1][1]    1 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    1 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    1 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
G 3 NAD B 1 1101 1101 NAD NAD . 
H 3 NAD A 1 1101 1101 NAD NAD . 
I 3 NAD E 1 1101 1101 NAD NAD . 
J 3 NAD D 1 1101 1101 NAD NAD . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 P PA NAD . . . J 3 218.935 186.793 194.532 1 111.9 ? PA NAD 1101 D 1 
HETATM 2 O O1A NAD . . . J 3 218.856 185.31 194.231 1 100.33 ? O1A NAD 1101 D 1 
HETATM 3 O O2A NAD . . . J 3 217.999 187.128 195.678 1 107.94 ? O2A NAD 1101 D 1 
HETATM 4 O O5B NAD . . . J 3 218.509 187.638 193.226 1 108.78 ? O5B NAD 1101 D 1 
HETATM 5 C C5B NAD . . . J 3 219.481 187.85 192.262 1 100.57 ? C5B NAD 1101 D 1 
HETATM 6 C C4B NAD . . . J 3 218.823 187.829 190.831 1 95.48 ? C4B NAD 1101 D 1 
HETATM 7 O O4B NAD . . . J 3 219.936 187.699 189.735 1 102.77 ? O4B NAD 1101 D 1 
HETATM 8 C C3B NAD . . . J 3 218.079 186.801 190.716 1 95.19 ? C3B NAD 1101 D 1 
HETATM 9 O O3B NAD . . . J 3 216.668 187.196 190.818 1 107.42 ? O3B NAD 1101 D 1 
HETATM 10 C C2B NAD . . . J 3 218.365 186.15 189.202 1 98.07 ? C2B NAD 1101 D 1 
HETATM 11 O O2B NAD . . . J 3 217.476 186.768 188.234 1 109.19 ? O2B NAD 1101 D 1 
HETATM 12 C C1B NAD . . . J 3 219.578 186.415 188.913 1 103.1 ? C1B NAD 1101 D 1 
HETATM 13 N N9A NAD . . . J 3 220.469 185.28 189.318 1 100.14 ? N9A NAD 1101 D 1 
HETATM 14 C C8A NAD . . . J 3 220.787 184.599 190.428 1 102.01 ? C8A NAD 1101 D 1 
HETATM 15 N N7A NAD . . . J 3 221.702 183.651 190.095 1 95.59 ? N7A NAD 1101 D 1 
HETATM 16 C C5A NAD . . . J 3 221.945 183.757 188.768 1 91.76 ? C5A NAD 1101 D 1 
HETATM 17 C C6A NAD . . . J 3 222.772 183.053 187.936 1 97.49 ? C6A NAD 1101 D 1 
HETATM 18 N N6A NAD . . . J 3 223.679 181.952 188.167 1 104.43 ? N6A NAD 1101 D 1 
HETATM 19 N N1A NAD . . . J 3 222.834 183.353 186.654 1 100.4 ? N1A NAD 1101 D 1 
HETATM 20 C C2A NAD . . . J 3 222.071 184.366 186.156 1 100.79 ? C2A NAD 1101 D 1 
HETATM 21 N N3A NAD . . . J 3 221.261 185.055 186.969 1 92.1 ? N3A NAD 1101 D 1 
HETATM 22 C C4A NAD . . . J 3 221.194 184.755 188.28 1 93.12 ? C4A NAD 1101 D 1 
HETATM 23 O O3 NAD . . . J 3 220.463 187.199 194.934 1 108.64 ? O3 NAD 1101 D 1 
HETATM 24 P PN NAD . . . J 3 221.496 186.215 195.826 1 121.37 ? PN NAD 1101 D 1 
HETATM 25 O O1N NAD . . . J 3 221.205 186.39 197.349 1 108.01 ? O1N NAD 1101 D 1 
HETATM 26 O O2N NAD . . . J 3 222.98 186.616 195.531 1 103.88 ? O2N NAD 1101 D 1 
HETATM 27 O O5D NAD . . . J 3 221.253 184.646 195.4 1 112.15 ? O5D NAD 1101 D 1 
HETATM 28 C C5D NAD . . . J 3 221.694 184.194 194.048 1 109.88 ? C5D NAD 1101 D 1 
HETATM 29 C C4D NAD . . . J 3 222.622 182.983 194.189 1 111.6 ? C4D NAD 1101 D 1 
HETATM 30 O O4D NAD . . . J 3 223.672 183.287 195.277 1 108.6 ? O4D NAD 1101 D 1 
HETATM 31 C C3D NAD . . . J 3 221.987 181.933 194.589 1 108.69 ? C3D NAD 1101 D 1 
HETATM 32 O O3D NAD . . . J 3 221.891 180.967 193.483 1 107.08 ? O3D NAD 1101 D 1 
HETATM 33 C C2D NAD . . . J 3 222.839 181.257 195.816 1 107.42 ? C2D NAD 1101 D 1 
HETATM 34 O O2D NAD . . . J 3 223.178 179.834 195.462 1 105.82 ? O2D NAD 1101 D 1 
HETATM 35 C C1D NAD . . . J 3 223.93 181.931 195.954 1 106.19 ? C1D NAD 1101 D 1 
HETATM 36 N N1N NAD . . . J 3 224.289 182.16 197.415 1 109.13 ? N1N NAD 1101 D 1 
HETATM 37 C C2N NAD . . . J 3 223.692 183.147 198.129 1 105.17 ? C2N NAD 1101 D 1 
HETATM 38 C C3N NAD . . . J 3 224.036 183.354 199.491 1 107.09 ? C3N NAD 1101 D 1 
HETATM 39 C C7N NAD . . . J 3 223.358 184.479 200.333 1 108.79 ? C7N NAD 1101 D 1 
HETATM 40 O O7N NAD . . . J 3 223.883 184.858 201.36 1 110.93 ? O7N NAD 1101 D 1 
HETATM 41 N N7N NAD . . . J 3 222.153 185.058 199.934 1 107.78 ? N7N NAD 1101 D 1 
HETATM 42 C C4N NAD . . . J 3 224.969 182.57 200.072 1 108.75 ? C4N NAD 1101 D 1 
HETATM 43 C C5N NAD . . . J 3 225.58 181.573 199.352 1 109 ? C5N NAD 1101 D 1 
HETATM 44 C C6N NAD . . . J 3 225.231 181.374 198.008 1 106.94 ? C6N NAD 1101 D 1 
HETATM 45 H H51A NAD . . . J 3 220.23 187.063 192.325 1 102.93 ? H51A NAD 1101 D 1 
HETATM 46 H H52A NAD . . . J 3 219.975 188.863 192.439 1 103.36 ? H52A NAD 1101 D 1 
HETATM 47 H H4B NAD . . . J 3 218.224 188.756 190.66 1 102.09 ? H4B NAD 1101 D 1 
HETATM 48 H H3B NAD . . . J 3 218.324 186.085 191.472 1 102.47 ? H3B NAD 1101 D 1 
HETATM 49 H HO3A NAD . . . J 3 216.256 187.088 189.992 1 102.89 ? HO3A NAD 1101 D 1 
HETATM 50 H H2B NAD . . . J 3 218.206 184.995 189.227 1 101.93 ? H2B NAD 1101 D 1 
HETATM 51 H HO2A NAD . . . J 3 217.584 187.779 188.271 1 102.69 ? HO2A NAD 1101 D 1 
HETATM 52 H H1B NAD . . . J 3 219.659 186.638 187.84 1 102.39 ? H1B NAD 1101 D 1 
HETATM 53 H H8A NAD . . . J 3 220.364 184.783 191.463 1 103.79 ? H8A NAD 1101 D 1 
HETATM 54 H H61A NAD . . . J 3 224.228 181.578 187.403 1 103.09 ? H61A NAD 1101 D 1 
HETATM 55 H H62A NAD . . . J 3 223.761 181.57 189.057 1 103.64 ? H62A NAD 1101 D 1 
HETATM 56 H H2A NAD . . . J 3 222.119 184.617 185.098 1 101.64 ? H2A NAD 1101 D 1 
HETATM 57 H H51N NAD . . . J 3 222.272 185.052 193.53 1 103.58 ? H51N NAD 1101 D 1 
HETATM 58 H H52N NAD . . . J 3 220.822 183.928 193.436 1 104.17 ? H52N NAD 1101 D 1 
HETATM 59 H H4D NAD . . . J 3 223.099 182.785 193.283 1 104.31 ? H4D NAD 1101 D 1 
HETATM 60 H H3D NAD . . . J 3 220.919 182.212 194.965 1 103.44 ? H3D NAD 1101 D 1 
HETATM 61 H HO3N NAD . . . J 3 222.48 180.226 193.655 1 103.89 ? HO3N NAD 1101 D 1 
HETATM 62 H H2D NAD . . . J 3 222.211 181.279 196.773 1 104.15 ? H2D NAD 1101 D 1 
HETATM 63 H HO2N NAD . . . J 3 223.115 179.315 196.2 1 103.43 ? HO2N NAD 1101 D 1 
HETATM 64 H H1D NAD . . . J 3 224.771 181.398 195.429 1 103.3 ? H1D NAD 1101 D 1 
HETATM 65 H H2N NAD . . . J 3 222.934 183.78 197.646 1 103.27 ? H2N NAD 1101 D 1 
HETATM 66 H H71N NAD . . . J 3 221.73 185.793 200.506 1 104.63 ? H71N NAD 1101 D 1 
HETATM 67 H H72N NAD . . . J 3 221.669 184.743 199.041 1 103.56 ? H72N NAD 1101 D 1 
HETATM 68 H H4N NAD . . . J 3 225.24 182.73 201.133 1 104.42 ? H4N NAD 1101 D 1 
HETATM 69 H H5N NAD . . . J 3 226.311 180.956 199.809 1 103.93 ? H5N NAD 1101 D 1 
HETATM 70 H H6N NAD . . . J 3 225.96 180.534 197.947 1 103.16 ? H6N NAD 1101 D 1 
#
_model_server_stats.io_time_ms              202 
_model_server_stats.parse_time_ms           61 
_model_server_stats.create_model_time_ms    278 
_model_server_stats.query_time_ms           2409 
_model_server_stats.encode_time_ms          80 
_model_server_stats.element_count           70 
#