data_8ZD5 # _model_server_result.job_id ZYr1MOJcCIfQ7a6oU9oy2Q _model_server_result.datetime_utc '2025-03-25 18:56:19' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 8zd5 # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"Q","auth_seq_id":201}' # _entry.id 8ZD5 # _exptl.entry_id 8ZD5 _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 65.409 _entity.id 4 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'ZINC ION' _entity.pdbx_number_of_molecules 4 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 108.46 _cell.angle_gamma 90 _cell.entry_id 8ZD5 _cell.length_a 167.915 _cell.length_b 82.213 _cell.length_c 187.612 _cell.Z_PDB 16 _cell.pdbx_unique_axis ? # _symmetry.entry_id 8ZD5 _symmetry.cell_setting ? _symmetry.Int_Tables_number 5 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'I 1 2 1' # loop_ _pdbx_struct_assembly.method_details _pdbx_struct_assembly.oligomeric_details _pdbx_struct_assembly.oligomeric_count _pdbx_struct_assembly.details _pdbx_struct_assembly.id ? hexameric 6 author_defined_assembly 1 ? hexameric 6 author_defined_assembly 2 # loop_ _pdbx_struct_assembly_gen.asym_id_list _pdbx_struct_assembly_gen.assembly_id _pdbx_struct_assembly_gen.oper_expression A,F,G,J,K,L,Q,R,S,T 1 1 B,C,D,E,H,I,M,N,O,P 2 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 4 M N N ? 4 O N N ? 4 Q N N ? 4 S N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order disulf ? disulf1 A SG CYS 23 H CYS 22 1_555 A SG CYS 97 H CYS 96 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.045 ? disulf ? disulf2 A SG CYS 117 H CYS 116 1_555 L SG CYS 147 I CYS 146 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.035 ? disulf ? disulf3 B SG CYS 24 F CYS 23 1_555 B SG CYS 89 F CYS 88 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.092 ? disulf ? disulf4 B SG CYS 147 F CYS 146 1_555 C SG CYS 117 E CYS 116 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.084 ? disulf ? disulf5 C SG CYS 23 E CYS 22 1_555 C SG CYS 97 E CYS 96 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.083 ? disulf ? disulf6 D SG CYS 57 A CYS 57 1_555 D SG CYS 146 A CYS 146 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.124 ? disulf ? disulf7 E SG CYS 57 D CYS 57 1_555 E SG CYS 146 D CYS 146 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.122 ? disulf ? disulf8 F SG CYS 57 G CYS 57 1_555 F SG CYS 146 G CYS 146 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.087 ? disulf ? disulf9 G SG CYS 57 J CYS 57 1_555 G SG CYS 146 J CYS 146 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.088 ? disulf ? disulf10 H SG CYS 23 B CYS 22 1_555 H SG CYS 97 B CYS 96 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.028 ? disulf ? disulf11 H SG CYS 117 B CYS 116 1_555 I SG CYS 147 C CYS 146 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.075 ? disulf ? disulf12 I SG CYS 24 C CYS 23 1_555 I SG CYS 89 C CYS 88 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.088 ? disulf ? disulf13 J SG CYS 24 L CYS 23 1_555 J SG CYS 89 L CYS 88 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.081 ? disulf ? disulf14 J SG CYS 147 L CYS 146 1_555 K SG CYS 117 K CYS 116 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.1 ? disulf ? disulf15 K SG CYS 23 K CYS 22 1_555 K SG CYS 97 K CYS 96 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.034 ? disulf ? disulf16 L SG CYS 24 I CYS 23 1_555 L SG CYS 89 I CYS 88 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.062 ? metalc ? metalc1 D ND1 HIS 46 A HIS 46 1_555 N CU CU . A CU 202 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.044 ? metalc ? metalc2 D NE2 HIS 48 A HIS 48 1_555 N CU CU . A CU 202 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.066 ? metalc ? metalc3 D ND1 HIS 63 A HIS 63 1_555 M ZN ZN . A ZN 201 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.147 ? metalc ? metalc4 D ND1 HIS 71 A HIS 71 1_555 M ZN ZN . A ZN 201 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.105 ? metalc ? metalc5 D ND1 HIS 80 A HIS 80 1_555 M ZN ZN . A ZN 201 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.175 ? metalc ? metalc6 D OD1 ASP 83 A ASP 83 1_555 M ZN ZN . A ZN 201 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.024 ? metalc ? metalc7 D OD2 ASP 83 A ASP 83 1_555 M ZN ZN . A ZN 201 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.073 ? metalc ? metalc8 D NE2 HIS 120 A HIS 120 1_555 N CU CU . A CU 202 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.029 ? metalc ? metalc9 E ND1 HIS 46 D HIS 46 1_555 P CU CU . D CU 202 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.061 ? metalc ? metalc10 E NE2 HIS 48 D HIS 48 1_555 P CU CU . D CU 202 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.048 ? metalc ? metalc11 E ND1 HIS 63 D HIS 63 1_555 O ZN ZN . D ZN 201 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.106 ? metalc ? metalc12 E ND1 HIS 71 D HIS 71 1_555 O ZN ZN . D ZN 201 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.139 ? metalc ? metalc13 E ND1 HIS 80 D HIS 80 1_555 O ZN ZN . D ZN 201 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.143 ? metalc ? metalc14 E OD1 ASP 83 D ASP 83 1_555 O ZN ZN . D ZN 201 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.04 ? metalc ? metalc15 E OD2 ASP 83 D ASP 83 1_555 O ZN ZN . D ZN 201 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.116 ? metalc ? metalc16 E NE2 HIS 120 D HIS 120 1_555 P CU CU . D CU 202 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.055 ? metalc ? metalc17 F ND1 HIS 46 G HIS 46 1_555 R CU CU . G CU 202 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.058 ? metalc ? metalc18 F NE2 HIS 48 G HIS 48 1_555 R CU CU . G CU 202 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.03 ? metalc ? metalc19 F ND1 HIS 63 G HIS 63 1_555 Q ZN ZN . G ZN 201 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.28 ? metalc ? metalc20 F ND1 HIS 71 G HIS 71 1_555 Q ZN ZN . G ZN 201 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.108 ? metalc ? metalc21 F ND1 HIS 80 G HIS 80 1_555 Q ZN ZN . G ZN 201 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.074 ? metalc ? metalc22 F OD1 ASP 83 G ASP 83 1_555 Q ZN ZN . G ZN 201 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.033 ? metalc ? metalc23 F OD2 ASP 83 G ASP 83 1_555 Q ZN ZN . G ZN 201 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.005 ? metalc ? metalc24 F NE2 HIS 120 G HIS 120 1_555 R CU CU . G CU 202 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.03 ? metalc ? metalc25 G ND1 HIS 46 J HIS 46 1_555 T CU CU . J CU 202 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.051 ? metalc ? metalc26 G NE2 HIS 48 J HIS 48 1_555 T CU CU . J CU 202 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.069 ? metalc ? metalc27 G ND1 HIS 63 J HIS 63 1_555 S ZN ZN . J ZN 201 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.185 ? metalc ? metalc28 G ND1 HIS 71 J HIS 71 1_555 S ZN ZN . J ZN 201 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.113 ? metalc ? metalc29 G ND1 HIS 80 J HIS 80 1_555 S ZN ZN . J ZN 201 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.126 ? metalc ? metalc30 G OD1 ASP 83 J ASP 83 1_555 S ZN ZN . J ZN 201 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.047 ? metalc ? metalc31 G OD2 ASP 83 J ASP 83 1_555 S ZN ZN . J ZN 201 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.068 ? metalc ? metalc32 G NE2 HIS 120 J HIS 120 1_555 T CU CU . J CU 202 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.041 ? # _chem_comp.formula 'Zn 2' _chem_comp.formula_weight 65.409 _chem_comp.id ZN _chem_comp.mon_nstd_flag . _chem_comp.name 'ZINC ION' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # _atom_sites.entry_id 8ZD5 _atom_sites.fract_transf_matrix[1][1] 0.005955 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0.001988 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.012164 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.005619 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code M 4 ZN A 1 201 201 ZN ZN . N 5 CU A 1 202 202 CU CU . O 4 ZN D 1 201 201 ZN ZN . P 5 CU D 1 202 202 CU CU . Q 4 ZN G 1 201 201 ZN ZN . R 5 CU G 1 202 202 CU CU . S 4 ZN J 1 201 201 ZN ZN . T 5 CU J 1 202 202 CU CU . # _atom_site.group_PDB HETATM _atom_site.id 1 _atom_site.type_symbol ZN _atom_site.label_atom_id ZN _atom_site.label_comp_id ZN _atom_site.label_seq_id . _atom_site.label_alt_id . _atom_site.pdbx_PDB_ins_code . _atom_site.label_asym_id Q _atom_site.label_entity_id 4 _atom_site.Cartn_x 30.274 _atom_site.Cartn_y -25.361 _atom_site.Cartn_z -51.901 _atom_site.occupancy 1 _atom_site.B_iso_or_equiv 118.86 _atom_site.pdbx_formal_charge ? _atom_site.auth_atom_id ZN _atom_site.auth_comp_id ZN _atom_site.auth_seq_id 201 _atom_site.auth_asym_id G _atom_site.pdbx_PDB_model_num 1 # _model_server_stats.io_time_ms 10 _model_server_stats.parse_time_ms 11 _model_server_stats.create_model_time_ms 27 _model_server_stats.query_time_ms 241 _model_server_stats.encode_time_ms 3 _model_server_stats.element_count 1 #