data_8ZEM # _model_server_result.job_id -7z6zgxb_eGwr2ba-7efpw _model_server_result.datetime_utc '2024-11-12 22:36:06' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 8zem # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"B","auth_seq_id":701}' # _entry.id 8ZEM # _exptl.entry_id 8ZEM _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 525.468 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 1-[5-[2,3-bis(chloranyl)phenyl]-2,3-dihydro-1~{H}-inden-4-yl]-3-[4-(2-oxidanylpropan-2-yl)thiophen-2-yl]sulfonyl-urea _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 120 _cell.entry_id 8ZEM _cell.length_a 97.246 _cell.length_b 97.246 _cell.length_c 256.792 _cell.Z_PDB 12 _cell.pdbx_unique_axis ? # _symmetry.entry_id 8ZEM _symmetry.cell_setting ? _symmetry.Int_Tables_number 178 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 61 2 2' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 2 _struct_asym.id B _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # _chem_comp.formula 'C23 H22 Cl2 N2 O4 S2' _chem_comp.formula_weight 525.468 _chem_comp.id A1D79 _chem_comp.mon_nstd_flag . _chem_comp.name 1-[5-[2,3-bis(chloranyl)phenyl]-2,3-dihydro-1~{H}-inden-4-yl]-3-[4-(2-oxidanylpropan-2-yl)thiophen-2-yl]sulfonyl-urea _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C22 C21 A1D79 sing 1 n n O4 C21 A1D79 sing 2 n n C21 C23 A1D79 sing 3 n n C21 C19 A1D79 sing 4 n n C14 C13 A1D79 doub 5 n y C14 C15 A1D79 sing 6 n y C19 C20 A1D79 doub 7 n y C19 C18 A1D79 sing 8 n y C13 C12 A1D79 sing 9 n y C15 C10 A1D79 doub 10 n y C20 S2 A1D79 sing 11 n y C18 C17 A1D79 doub 12 n y C12 C11 A1D79 doub 13 n y C12 CL2 A1D79 sing 14 n n C10 C11 A1D79 sing 15 n y C10 C5 A1D79 sing 16 n n C4 C5 A1D79 doub 17 n y C4 C3 A1D79 sing 18 n y C11 CL1 A1D79 sing 19 n n S2 C17 A1D79 sing 20 n y C5 C6 A1D79 sing 21 n y C17 S1 A1D79 sing 22 n n C3 C2 A1D79 doub 23 n y O1 C16 A1D79 doub 24 n n O2 S1 A1D79 doub 25 n n C6 N1 A1D79 sing 26 n n C6 C1 A1D79 doub 27 n y C2 C1 A1D79 sing 28 n y C2 C9 A1D79 sing 29 n n C16 N1 A1D79 sing 30 n n C16 N2 A1D79 sing 31 n n S1 N2 A1D79 sing 32 n n S1 O3 A1D79 doub 33 n n C1 C7 A1D79 sing 34 n n C9 C8 A1D79 sing 35 n n C8 C7 A1D79 sing 36 n n N1 H1 A1D79 sing 37 n n C4 H2 A1D79 sing 38 n n C7 H3 A1D79 sing 39 n n C7 H4 A1D79 sing 40 n n C8 H5 A1D79 sing 41 n n C8 H6 A1D79 sing 42 n n C13 H7 A1D79 sing 43 n n C15 H8 A1D79 sing 44 n n C20 H9 A1D79 sing 45 n n C22 H10 A1D79 sing 46 n n C22 H11 A1D79 sing 47 n n C22 H12 A1D79 sing 48 n n C3 H13 A1D79 sing 49 n n C9 H14 A1D79 sing 50 n n C9 H15 A1D79 sing 51 n n C14 H16 A1D79 sing 52 n n N2 H17 A1D79 sing 53 n n C18 H18 A1D79 sing 54 n n C23 H19 A1D79 sing 55 n n C23 H20 A1D79 sing 56 n n C23 H21 A1D79 sing 57 n n O4 H22 A1D79 sing 58 n n # _atom_sites.entry_id 8ZEM _atom_sites.fract_transf_matrix[1][1] 0.010283 _atom_sites.fract_transf_matrix[1][2] 0.005937 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.011874 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.003894 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 A1D79 A 1 701 1 A1D79 LIG . C 3 ADP A 1 702 1 ADP ADP . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 N N1 A1D79 . . . B 2 -19.807 -35.223 -3.195 1 77.69 ? N1 A1D79 701 A 1 HETATM 2 C C4 A1D79 . . . B 2 -22.304 -33.916 -5.593 1 80.11 ? C4 A1D79 701 A 1 HETATM 3 C C5 A1D79 . . . B 2 -21.359 -34.758 -5.005 1 80.29 ? C5 A1D79 701 A 1 HETATM 4 C C6 A1D79 . . . B 2 -20.756 -34.385 -3.794 1 78.96 ? C6 A1D79 701 A 1 HETATM 5 C C7 A1D79 . . . B 2 -20.638 -32.548 -1.894 1 79.84 ? C7 A1D79 701 A 1 HETATM 6 C C8 A1D79 . . . B 2 -20.978 -31.053 -2.053 1 80.13 ? C8 A1D79 701 A 1 HETATM 7 C C10 A1D79 . . . B 2 -20.992 -36.034 -5.668 1 81.95 ? C10 A1D79 701 A 1 HETATM 8 C C13 A1D79 . . . B 2 -20.277 -38.4 -6.935 1 83.69 ? C13 A1D79 701 A 1 HETATM 9 C C15 A1D79 . . . B 2 -20.264 -36.003 -6.859 1 82.57 ? C15 A1D79 701 A 1 HETATM 10 C C17 A1D79 . . . B 2 -16.336 -37.606 -5 1 72.95 ? C17 A1D79 701 A 1 HETATM 11 C C20 A1D79 . . . B 2 -16.925 -39.413 -6.63 1 72.47 ? C20 A1D79 701 A 1 HETATM 12 C C21 A1D79 . . . B 2 -15.284 -38.679 -8.392 1 71.59 ? C21 A1D79 701 A 1 HETATM 13 C C22 A1D79 . . . B 2 -16.153 -39.407 -9.422 1 71.64 ? C22 A1D79 701 A 1 HETATM 14 C C1 A1D79 . . . B 2 -21.112 -33.185 -3.184 1 79.48 ? C1 A1D79 701 A 1 HETATM 15 C C2 A1D79 . . . B 2 -22.053 -32.36 -3.776 1 79.83 ? C2 A1D79 701 A 1 HETATM 16 C C3 A1D79 . . . B 2 -22.646 -32.727 -4.978 1 80.03 ? C3 A1D79 701 A 1 HETATM 17 C C9 A1D79 . . . B 2 -22.252 -31.129 -2.919 1 80.1 ? C9 A1D79 701 A 1 HETATM 18 C C11 A1D79 . . . B 2 -21.356 -37.264 -5.109 1 83.44 ? C11 A1D79 701 A 1 HETATM 19 C C12 A1D79 . . . B 2 -20.995 -38.441 -5.75 1 84.06 ? C12 A1D79 701 A 1 HETATM 20 C C14 A1D79 . . . B 2 -19.911 -37.183 -7.486 1 83.23 ? C14 A1D79 701 A 1 HETATM 21 C C16 A1D79 . . . B 2 -18.57 -35.381 -3.723 1 76.13 ? C16 A1D79 701 A 1 HETATM 22 N N2 A1D79 . . . B 2 -17.701 -36.208 -3.101 1 74.63 ? N2 A1D79 701 A 1 HETATM 23 O O1 A1D79 . . . B 2 -18.253 -34.784 -4.738 1 75.87 ? O1 A1D79 701 A 1 HETATM 24 S S1 A1D79 . . . B 2 -16.164 -36.488 -3.654 1 73.23 ? S1 A1D79 701 A 1 HETATM 25 O O2 A1D79 . . . B 2 -15.644 -35.271 -4.171 1 73.31 ? O2 A1D79 701 A 1 HETATM 26 O O3 A1D79 . . . B 2 -15.513 -37.227 -2.635 1 72.91 ? O3 A1D79 701 A 1 HETATM 27 C C18 A1D79 . . . B 2 -15.648 -37.575 -6.141 1 72.61 ? C18 A1D79 701 A 1 HETATM 28 C C19 A1D79 . . . B 2 -15.973 -38.571 -7.049 1 72.12 ? C19 A1D79 701 A 1 HETATM 29 S S2 A1D79 . . . B 2 -17.464 -38.95 -5.022 1 72.83 ? S2 A1D79 701 A 1 HETATM 30 C C23 A1D79 . . . B 2 -13.969 -39.44 -8.216 1 71.56 ? C23 A1D79 701 A 1 HETATM 31 O O4 A1D79 . . . B 2 -14.999 -37.371 -8.889 1 70.93 ? O4 A1D79 701 A 1 HETATM 32 CL CL1 A1D79 . . . B 2 -22.256 -37.33 -3.624 1 84.74 ? CL1 A1D79 701 A 1 HETATM 33 CL CL2 A1D79 . . . B 2 -21.442 -39.975 -5.073 1 86 ? CL2 A1D79 701 A 1 # _model_server_stats.io_time_ms 70 _model_server_stats.parse_time_ms 18 _model_server_stats.create_model_time_ms 17 _model_server_stats.query_time_ms 346 _model_server_stats.encode_time_ms 7 _model_server_stats.element_count 33 #