data_8ZES # _model_server_result.job_id BkxA9tH5YNrGxSBqxx7J-A _model_server_result.datetime_utc '2024-10-18 05:21:48' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 8zes # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"O","auth_seq_id":601}' # _entry.id 8ZES # _exptl.entry_id 8ZES _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 221.208 _entity.id 4 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 2-acetamido-2-deoxy-beta-D-glucopyranose _entity.pdbx_number_of_molecules 2 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 8ZES _cell.length_a 126.64 _cell.length_b 194.24 _cell.length_c 264.37 _cell.Z_PDB 40 _cell.pdbx_unique_axis ? # _symmetry.entry_id 8ZES _symmetry.cell_setting ? _symmetry.Int_Tables_number 24 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'I 21 21 21' # loop_ _pdbx_struct_assembly.method_details _pdbx_struct_assembly.oligomeric_details _pdbx_struct_assembly.oligomeric_count _pdbx_struct_assembly.details _pdbx_struct_assembly.id PISA dimeric 2 author_and_software_defined_assembly 1 PISA dimeric 2 author_and_software_defined_assembly 2 PISA dimeric 2 author_and_software_defined_assembly 3 PISA dimeric 2 author_and_software_defined_assembly 4 PISA dimeric 2 author_and_software_defined_assembly 5 # loop_ _pdbx_struct_assembly_gen.asym_id_list _pdbx_struct_assembly_gen.assembly_id _pdbx_struct_assembly_gen.oper_expression A,B,K 1 1 C,D,N 2 1 E,J,O 3 1 F,G,L 4 1 H,I,M 5 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 4 N N N ? 4 O N N # _pdbx_entity_branch.entity_id 3 _pdbx_entity_branch.type oligosaccharide # _pdbx_entity_branch_link.link_id 1 _pdbx_entity_branch_link.details ? _pdbx_entity_branch_link.entity_id 3 _pdbx_entity_branch_link.entity_branch_list_num_1 2 _pdbx_entity_branch_link.entity_branch_list_num_2 1 _pdbx_entity_branch_link.comp_id_1 NAG _pdbx_entity_branch_link.comp_id_2 NAG _pdbx_entity_branch_link.atom_id_1 C1 _pdbx_entity_branch_link.leaving_atom_id_1 O1 _pdbx_entity_branch_link.atom_stereo_config_1 . _pdbx_entity_branch_link.atom_id_2 O4 _pdbx_entity_branch_link.leaving_atom_id_2 HO4 _pdbx_entity_branch_link.atom_stereo_config_2 . _pdbx_entity_branch_link.value_order sing # loop_ _pdbx_branch_scheme.entity_id _pdbx_branch_scheme.hetero _pdbx_branch_scheme.asym_id _pdbx_branch_scheme.mon_id _pdbx_branch_scheme.num _pdbx_branch_scheme.pdb_asym_id _pdbx_branch_scheme.pdb_seq_num _pdbx_branch_scheme.pdb_mon_id _pdbx_branch_scheme.auth_asym_id _pdbx_branch_scheme.auth_seq_num _pdbx_branch_scheme.auth_mon_id 3 n K NAG 1 K 1 NAG K 1 NAG 3 n K NAG 2 K 2 NAG K 2 NAG 3 n L NAG 1 L 1 NAG L 1 NAG 3 n L NAG 2 L 2 NAG L 2 NAG 3 n M NAG 1 M 1 NAG M 1 NAG 3 n M NAG 2 M 2 NAG M 2 NAG # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order disulf ? disulf1 A SG CYS 4 C CYS 336 1_555 A SG CYS 29 C CYS 361 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.087 ? disulf ? disulf2 A SG CYS 47 C CYS 379 1_555 A SG CYS 100 C CYS 432 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.087 ? disulf ? disulf3 A SG CYS 59 C CYS 391 1_555 A SG CYS 193 C CYS 525 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.023 ? disulf ? disulf4 A SG CYS 148 C CYS 480 1_555 A SG CYS 156 C CYS 488 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.087 ? disulf ? disulf5 B SG CYS 22 E CYS 22 1_555 B SG CYS 95 E CYS 95 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.137 ? disulf ? disulf6 B SG CYS 30 E CYS 30 1_555 B SG CYS 100 E CYS 100 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.004 ? disulf ? disulf7 C SG CYS 4 A CYS 336 1_555 C SG CYS 29 A CYS 361 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.075 ? disulf ? disulf8 C SG CYS 47 A CYS 379 1_555 C SG CYS 100 A CYS 432 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.103 ? disulf ? disulf9 C SG CYS 59 A CYS 391 1_555 C SG CYS 193 A CYS 525 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.003 ? disulf ? disulf10 C SG CYS 148 A CYS 480 1_555 C SG CYS 156 A CYS 488 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.033 ? disulf ? disulf11 D SG CYS 22 B CYS 22 1_555 D SG CYS 95 B CYS 95 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.075 ? disulf ? disulf12 D SG CYS 30 B CYS 30 1_555 D SG CYS 100 B CYS 100 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.158 ? disulf ? disulf13 E SG CYS 22 F CYS 22 1_555 E SG CYS 95 F CYS 95 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.085 ? disulf ? disulf14 E SG CYS 30 F CYS 30 1_555 E SG CYS 100 F CYS 100 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.086 ? disulf ? disulf15 F SG CYS 4 G CYS 336 1_555 F SG CYS 29 G CYS 361 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.066 ? disulf ? disulf16 F SG CYS 47 G CYS 379 1_555 F SG CYS 100 G CYS 432 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.129 ? disulf ? disulf17 F SG CYS 59 G CYS 391 1_555 F SG CYS 193 G CYS 525 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.002 ? disulf ? disulf18 F SG CYS 148 G CYS 480 1_555 F SG CYS 156 G CYS 488 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.088 ? disulf ? disulf19 G SG CYS 22 H CYS 22 1_555 G SG CYS 95 H CYS 95 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.091 ? disulf ? disulf20 G SG CYS 30 H CYS 30 1_555 G SG CYS 100 H CYS 100 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.139 ? disulf ? disulf21 H SG CYS 4 I CYS 336 1_555 H SG CYS 29 I CYS 361 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.978 ? disulf ? disulf22 H SG CYS 47 I CYS 379 1_555 H SG CYS 100 I CYS 432 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.079 ? disulf ? disulf23 H SG CYS 59 I CYS 391 1_555 H SG CYS 193 I CYS 525 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.026 ? disulf ? disulf24 H SG CYS 148 I CYS 480 1_555 H SG CYS 156 I CYS 488 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.064 ? disulf ? disulf25 I SG CYS 22 J CYS 22 1_555 I SG CYS 95 J CYS 95 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.045 ? disulf ? disulf26 I SG CYS 30 J CYS 30 1_555 I SG CYS 100 J CYS 100 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.135 ? disulf ? disulf27 J SG CYS 4 D CYS 336 1_555 J SG CYS 29 D CYS 361 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.064 ? disulf ? disulf28 J SG CYS 47 D CYS 379 1_555 J SG CYS 100 D CYS 432 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.066 ? disulf ? disulf29 J SG CYS 59 D CYS 391 1_555 J SG CYS 193 D CYS 525 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.043 ? disulf ? disulf30 J SG CYS 148 D CYS 480 1_555 J SG CYS 156 D CYS 488 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.081 ? covale ? covale1 F ND2 ASN 11 G ASN 343 1_555 L C1 NAG . L NAG 1 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.455 ? covale ? covale2 H ND2 ASN 11 I ASN 343 1_555 M C1 NAG . M NAG 1 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.448 ? covale ? covale3 J ND2 ASN 11 D ASN 343 1_555 O C1 NAG . D NAG 601 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.58 ? covale ? covale4 K O4 NAG . K NAG 1 1_555 K C1 NAG . K NAG 2 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.461 ? covale ? covale5 L O4 NAG . L NAG 1 1_555 L C1 NAG . L NAG 2 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.43 ? covale ? covale6 M O4 NAG . M NAG 1 1_555 M C1 NAG . M NAG 2 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.409 ? # _chem_comp.formula 'C8 H15 N O6' _chem_comp.formula_weight 221.208 _chem_comp.id NAG _chem_comp.mon_nstd_flag . _chem_comp.name 2-acetamido-2-deoxy-beta-D-glucopyranose _chem_comp.type 'd-saccharide, beta linking' _chem_comp.pdbx_synonyms N-acetyl-beta-D-glucosamine;2-acetamido-2-deoxy-beta-D-glucose;2-acetamido-2-deoxy-D-glucose;2-acetamido-2-deoxy-glucose;N-ACETYL-D-GLUCOSAMINE # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C1 C2 NAG sing 235 n n C1 O1 NAG sing 236 n n C1 O5 NAG sing 237 n n C1 H1 NAG sing 238 n n C2 C3 NAG sing 239 n n C2 N2 NAG sing 240 n n C2 H2 NAG sing 241 n n C3 C4 NAG sing 242 n n C3 O3 NAG sing 243 n n C3 H3 NAG sing 244 n n C4 C5 NAG sing 245 n n C4 O4 NAG sing 246 n n C4 H4 NAG sing 247 n n C5 C6 NAG sing 248 n n C5 O5 NAG sing 249 n n C5 H5 NAG sing 250 n n C6 O6 NAG sing 251 n n C6 H61 NAG sing 252 n n C6 H62 NAG sing 253 n n C7 C8 NAG sing 254 n n C7 N2 NAG sing 255 n n C7 O7 NAG doub 256 n n C8 H81 NAG sing 257 n n C8 H82 NAG sing 258 n n C8 H83 NAG sing 259 n n N2 HN2 NAG sing 260 n n O1 HO1 NAG sing 261 n n O3 HO3 NAG sing 262 n n O4 HO4 NAG sing 263 n n O6 HO6 NAG sing 264 n n # loop_ _pdbx_chem_comp_identifier.comp_id _pdbx_chem_comp_identifier.identifier _pdbx_chem_comp_identifier.type _pdbx_chem_comp_identifier.program _pdbx_chem_comp_identifier.program_version NAG DGlcpNAcb 'CONDENSED IUPAC CARBOHYDRATE SYMBOL' GMML 1 NAG N-acetyl-b-D-glucopyranosamine 'COMMON NAME' GMML 1 NAG b-D-GlcpNAc 'IUPAC CARBOHYDRATE SYMBOL' PDB-CARE 1 NAG GlcNAc 'SNFG CARBOHYDRATE SYMBOL' GMML 1 # _atom_sites.entry_id 8ZES _atom_sites.fract_transf_matrix[1][1] 0.007896 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.005148 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.003783 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code N 4 NAG A 1 601 530 NAG NAG . O 4 NAG D 1 601 601 NAG NAG . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 NAG . . . O 4 -22.092 -58.092 -61.837 1 180.53 ? C1 NAG 601 D 1 HETATM 2 C C2 NAG . . . O 4 -23.294 -58.781 -61.146 1 164.27 ? C2 NAG 601 D 1 HETATM 3 C C3 NAG . . . O 4 -23.08 -58.993 -59.606 1 227.85 ? C3 NAG 601 D 1 HETATM 4 C C4 NAG . . . O 4 -21.726 -59.579 -59.167 1 239.02 ? C4 NAG 601 D 1 HETATM 5 C C5 NAG . . . O 4 -20.629 -58.744 -59.859 1 236.04 ? C5 NAG 601 D 1 HETATM 6 C C6 NAG . . . O 4 -19.239 -59.36 -59.716 1 235.78 ? C6 NAG 601 D 1 HETATM 7 C C7 NAG . . . O 4 -25.717 -58.426 -61.984 1 160.95 ? C7 NAG 601 D 1 HETATM 8 C C8 NAG . . . O 4 -26.781 -57.379 -62.272 1 116 ? C8 NAG 601 D 1 HETATM 9 N N2 NAG . . . O 4 -24.471 -58.013 -61.59 1 159.23 ? N2 NAG 601 D 1 HETATM 10 O O3 NAG . . . O 4 -24.046 -59.871 -59.048 1 254.17 ? O3 NAG 601 D 1 HETATM 11 O O4 NAG . . . O 4 -21.649 -59.679 -57.707 1 143.56 ? O4 NAG 601 D 1 HETATM 12 O O5 NAG . . . O 4 -20.844 -58.597 -61.303 1 225.36 ? O5 NAG 601 D 1 HETATM 13 O O6 NAG . . . O 4 -18.826 -60.208 -60.854 1 245.13 ? O6 NAG 601 D 1 HETATM 14 O O7 NAG . . . O 4 -26.009 -59.62 -62.031 1 152.87 ? O7 NAG 601 D 1 # _model_server_stats.io_time_ms 13 _model_server_stats.parse_time_ms 13 _model_server_stats.create_model_time_ms 24 _model_server_stats.query_time_ms 302 _model_server_stats.encode_time_ms 10 _model_server_stats.element_count 14 #