data_8ZFN # _model_server_result.job_id bL6WWnzd6cLEBylRuh0dEw _model_server_result.datetime_utc '2024-11-14 04:25:48' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 8zfn # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"D","auth_seq_id":502}' # _entry.id 8ZFN # _exptl.entry_id 8ZFN _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 404.204 _entity.id 3 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description '2-[(2,4-DICHLOROBENZOYL)AMINO]-5-(PYRIMIDIN-2-YLOXY)BENZOIC ACID' _entity.pdbx_number_of_molecules 2 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 102.38 _cell.angle_gamma 90 _cell.entry_id 8ZFN _cell.length_a 92.186 _cell.length_b 61.991 _cell.length_c 118.841 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? # _symmetry.entry_id 8ZFN _symmetry.cell_setting ? _symmetry.Int_Tables_number 5 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'C 1 2 1' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # loop_ _pdbx_struct_assembly_gen.asym_id_list _pdbx_struct_assembly_gen.assembly_id _pdbx_struct_assembly_gen.oper_expression A,C,D,G 1 1 B,E,F,H 1 2 # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 2 'crystal symmetry operation' 3_455 x-1/2,y+1/2,z 1 0 0 0 1 0 0 0 1 -46.093 30.9955 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 3 D N N ? 3 F N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order covale ? covale1 A SG CYS 83 A CYS 285 1_555 C C9 GW9 . A GW9 501 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.906 ? covale ? covale2 B SG CYS 83 B CYS 285 1_555 E C9 GW9 . B GW9 501 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.888 ? # _chem_comp.formula 'C18 H11 Cl2 N3 O4' _chem_comp.formula_weight 404.204 _chem_comp.id PLB _chem_comp.mon_nstd_flag . _chem_comp.name '2-[(2,4-DICHLOROBENZOYL)AMINO]-5-(PYRIMIDIN-2-YLOXY)BENZOIC ACID' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms '5-(2-PYRIMIDINYLOXY)-2-BENZOYLAMINOBENZOIC ACID' # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag CL20 C16 PLB sing 289 n n C16 C15 PLB doub 290 n y C16 C17 PLB sing 291 n y C15 C14 PLB sing 292 n y C15 H15 PLB sing 293 n n C14 CL19 PLB sing 294 n n C14 C13 PLB doub 295 n y C17 C18 PLB doub 296 n y C17 H17 PLB sing 297 n n C18 C13 PLB sing 298 n y C18 H18 PLB sing 299 n n C13 C11 PLB sing 300 n n C11 O12 PLB doub 301 n n C11 N10 PLB sing 302 n n N10 C2 PLB sing 303 n n N10 H10 PLB sing 304 n n C2 C3 PLB sing 305 n y C2 C1 PLB doub 306 n y C3 C4 PLB doub 307 n y C3 H3 PLB sing 308 n n C4 C5 PLB sing 309 n y C4 H4 PLB sing 310 n n C5 C6 PLB doub 311 n y C5 O21 PLB sing 312 n n C6 C1 PLB sing 313 n y C6 H6 PLB sing 314 n n C1 C7 PLB sing 315 n n C7 O9 PLB doub 316 n n C7 O8 PLB sing 317 n n O8 HO8 PLB sing 318 n n O21 C22 PLB sing 319 n n C22 N27 PLB sing 320 n y C22 N23 PLB doub 321 n y N27 C26 PLB doub 322 n y C26 C25 PLB sing 323 n y C26 H26 PLB sing 324 n n C25 C24 PLB doub 325 n y C25 H25 PLB sing 326 n n C24 N23 PLB sing 327 n y C24 H24 PLB sing 328 n n # _atom_sites.entry_id 8ZFN _atom_sites.fract_transf_matrix[1][1] 0.010848 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0.002381 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.016131 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.008615 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 2 GW9 A 1 501 501 GW9 GW9 . D 3 PLB A 1 502 502 PLB PLB . E 2 GW9 B 1 501 501 GW9 GW9 . F 3 PLB B 1 502 502 PLB PLB . G 4 HOH A 1 601 18 HOH HOH . G 4 HOH A 2 602 3 HOH HOH . G 4 HOH A 3 603 21 HOH HOH . G 4 HOH A 4 604 28 HOH HOH . G 4 HOH A 5 605 16 HOH HOH . G 4 HOH A 6 606 4 HOH HOH . G 4 HOH A 7 607 2 HOH HOH . G 4 HOH A 8 608 19 HOH HOH . G 4 HOH A 9 609 26 HOH HOH . G 4 HOH A 10 610 29 HOH HOH . G 4 HOH A 11 611 6 HOH HOH . G 4 HOH A 12 612 11 HOH HOH . G 4 HOH A 13 613 33 HOH HOH . G 4 HOH A 14 614 12 HOH HOH . G 4 HOH A 15 615 25 HOH HOH . G 4 HOH A 16 616 35 HOH HOH . G 4 HOH A 17 617 24 HOH HOH . G 4 HOH A 18 618 32 HOH HOH . G 4 HOH A 19 619 23 HOH HOH . H 4 HOH B 1 601 13 HOH HOH . H 4 HOH B 2 602 17 HOH HOH . H 4 HOH B 3 603 15 HOH HOH . H 4 HOH B 4 604 22 HOH HOH . H 4 HOH B 5 605 5 HOH HOH . H 4 HOH B 6 606 34 HOH HOH . H 4 HOH B 7 607 8 HOH HOH . H 4 HOH B 8 608 37 HOH HOH . H 4 HOH B 9 609 10 HOH HOH . H 4 HOH B 10 610 1 HOH HOH . H 4 HOH B 11 611 9 HOH HOH . H 4 HOH B 12 612 27 HOH HOH . H 4 HOH B 13 613 14 HOH HOH . H 4 HOH B 14 614 7 HOH HOH . H 4 HOH B 15 615 30 HOH HOH . H 4 HOH B 16 616 20 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 CL CL20 PLB . . . D 3 20.229 58.731 10.833 1 85.23 ? CL20 PLB 502 A 1 HETATM 2 C C16 PLB . . . D 3 19.539 60.32 10.439 1 71.03 ? C16 PLB 502 A 1 HETATM 3 C C15 PLB . . . D 3 20.416 61.371 10.33 1 78.49 ? C15 PLB 502 A 1 HETATM 4 C C14 PLB . . . D 3 19.971 62.643 10.047 1 72.79 ? C14 PLB 502 A 1 HETATM 5 CL CL19 PLB . . . D 3 21.17 63.975 9.938 1 89.92 ? CL19 PLB 502 A 1 HETATM 6 C C17 PLB . . . D 3 18.181 60.517 10.246 1 68.87 ? C17 PLB 502 A 1 HETATM 7 C C18 PLB . . . D 3 17.714 61.787 9.95 1 66.31 ? C18 PLB 502 A 1 HETATM 8 C C13 PLB . . . D 3 18.613 62.839 9.876 1 65.34 ? C13 PLB 502 A 1 HETATM 9 C C11 PLB . . . D 3 18.105 64.214 9.521 1 67.7 ? C11 PLB 502 A 1 HETATM 10 O O12 PLB . . . D 3 18.825 64.865 8.857 1 69.28 ? O12 PLB 502 A 1 HETATM 11 N N10 PLB . . . D 3 16.791 64.682 9.92 1 64.97 ? N10 PLB 502 A 1 HETATM 12 C C2 PLB . . . D 3 16.423 66.007 9.479 1 63.37 ? C2 PLB 502 A 1 HETATM 13 C C3 PLB . . . D 3 17.403 66.957 9.303 1 70.05 ? C3 PLB 502 A 1 HETATM 14 C C4 PLB . . . D 3 17.111 68.207 8.878 1 73.03 ? C4 PLB 502 A 1 HETATM 15 C C5 PLB . . . D 3 15.8 68.529 8.623 1 75.98 ? C5 PLB 502 A 1 HETATM 16 C C6 PLB . . . D 3 14.771 67.589 8.79 1 66.11 ? C6 PLB 502 A 1 HETATM 17 C C1 PLB . . . D 3 15.106 66.3 9.227 1 60.64 ? C1 PLB 502 A 1 HETATM 18 C C7 PLB . . . D 3 14.105 65.164 9.481 1 57.92 ? C7 PLB 502 A 1 HETATM 19 O O9 PLB . . . D 3 12.878 65.41 9.643 1 52.51 ? O9 PLB 502 A 1 HETATM 20 O O8 PLB . . . D 3 14.518 63.966 9.57 1 50.83 ? O8 PLB 502 A 1 HETATM 21 O O21 PLB . . . D 3 15.638 69.837 8.167 1 84.94 ? O21 PLB 502 A 1 HETATM 22 C C22 PLB . . . D 3 16.76 70.05 7.31 1 86.6 ? C22 PLB 502 A 1 HETATM 23 N N27 PLB . . . D 3 16.949 69.281 6.198 1 74.64 ? N27 PLB 502 A 1 HETATM 24 C C26 PLB . . . D 3 18.004 69.49 5.428 1 80.58 ? C26 PLB 502 A 1 HETATM 25 C C25 PLB . . . D 3 18.906 70.463 5.712 1 79.7 ? C25 PLB 502 A 1 HETATM 26 C C24 PLB . . . D 3 18.731 71.232 6.808 1 82.38 ? C24 PLB 502 A 1 HETATM 27 N N23 PLB . . . D 3 17.679 71.022 7.595 1 90.77 ? N23 PLB 502 A 1 # _model_server_stats.io_time_ms 82 _model_server_stats.parse_time_ms 13 _model_server_stats.create_model_time_ms 12 _model_server_stats.query_time_ms 300 _model_server_stats.encode_time_ms 5 _model_server_stats.element_count 27 #