data_8ZFP # _model_server_result.job_id 3yvtXgqf6TSID8aNnqXZVg _model_server_result.datetime_utc '2024-11-14 06:17:54' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 8zfp # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"F","auth_seq_id":502}' # _entry.id 8ZFP # _exptl.entry_id 8ZFP _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 527.488 _entity.id 3 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description '(2S)-2-(3-{[1-(4-METHOXYBENZOYL)-2-METHYL-5-(TRIFLUOROMETHOXY)-1H-INDOL-3-YL]METHYL}PHENOXY)PROPANOIC ACID' _entity.pdbx_number_of_molecules 2 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 102.28 _cell.angle_gamma 90 _cell.entry_id 8ZFP _cell.length_a 91.844 _cell.length_b 62.221 _cell.length_c 119.237 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? # _symmetry.entry_id 8ZFP _symmetry.cell_setting ? _symmetry.Int_Tables_number 5 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'C 1 2 1' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # loop_ _pdbx_struct_assembly_gen.asym_id_list _pdbx_struct_assembly_gen.assembly_id _pdbx_struct_assembly_gen.oper_expression A,C,D,G 1 1 B,E,F,H 1 2 # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 2 'crystal symmetry operation' 3_455 x-1/2,y+1/2,z 1 0 0 0 1 0 0 0 1 -45.922 31.1105 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 3 D N N ? 3 F N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order covale ? covale1 A SG CYS 83 A CYS 285 1_555 C C9 GW9 . A GW9 501 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.855 ? covale ? covale2 B SG CYS 83 B CYS 285 1_555 E C9 GW9 . B GW9 501 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.837 ? # _chem_comp.formula 'C28 H24 F3 N O6' _chem_comp.formula_weight 527.488 _chem_comp.id 241 _chem_comp.mon_nstd_flag . _chem_comp.name '(2S)-2-(3-{[1-(4-METHOXYBENZOYL)-2-METHYL-5-(TRIFLUOROMETHOXY)-1H-INDOL-3-YL]METHYL}PHENOXY)PROPANOIC ACID' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms MRL24 # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag CAA OAV 241 sing 1 n n CAA HAA1 241 sing 2 n n CAA HAA2 241 sing 3 n n CAA HAA3 241 sing 4 n n OAV CBC 241 sing 5 n n CBC CAN 241 doub 6 n y CBC CAM 241 sing 7 n y CAM CAO 241 doub 8 n y CAM HAM 241 sing 9 n n CAO CBF 241 sing 10 n y CAO HAO 241 sing 11 n n CAN CAP 241 sing 12 n y CAN HAN 241 sing 13 n n CAP CBF 241 doub 14 n y CAP HAP 241 sing 15 n n CBF CAZ 241 sing 16 n n CAZ OAE 241 doub 17 n n CAZ NBK 241 sing 18 n n NBK CBB 241 sing 19 n y NBK CBI 241 sing 20 n y CBB CAB 241 sing 21 n n CBB CBG 241 doub 22 n y CAB HAB1 241 sing 23 n n CAB HAB2 241 sing 24 n n CAB HAB3 241 sing 25 n n CBI CBH 241 doub 26 n y CBI CAR 241 sing 27 n y CAR CAQ 241 doub 28 n y CAR HAR 241 sing 29 n n CAQ CBE 241 sing 30 n y CAQ HAQ 241 sing 31 n n CBE CAT 241 doub 32 n y CBE OAX 241 sing 33 n n OAX CBL 241 sing 34 n n CBL FAG 241 sing 35 n n CBL FAI 241 sing 36 n n CBL FAH 241 sing 37 n n CAT CBH 241 sing 38 n y CAT HAT 241 sing 39 n n CBH CBG 241 sing 40 n y CBG CAU 241 sing 41 n n CAU CBA 241 sing 42 n n CAU HAU1 241 sing 43 n n CAU HAU2 241 sing 44 n n CBA CAK 241 doub 45 n y CBA CAS 241 sing 46 n y CAS CBD 241 doub 47 n y CAS HAS 241 sing 48 n n CAK CAJ 241 sing 49 n y CAK HAK 241 sing 50 n n CAJ CAL 241 doub 51 n y CAJ HAJ 241 sing 52 n n CAL CBD 241 sing 53 n y CAL HAL 241 sing 54 n n CBD OAW 241 sing 55 n n OAW CBJ 241 sing 56 n n CBJ CAC 241 sing 57 n n CBJ CAY 241 sing 58 n n CBJ HBJ 241 sing 59 n n CAC HAC1 241 sing 60 n n CAC HAC2 241 sing 61 n n CAC HAC3 241 sing 62 n n CAY OAF 241 doub 63 n n CAY OAD 241 sing 64 n n OAD HOAD 241 sing 65 n n # _atom_sites.entry_id 8ZFP _atom_sites.fract_transf_matrix[1][1] 0.010888 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0.002369 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.016072 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.008583 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 2 GW9 A 1 501 501 GW9 GW9 . D 3 241 A 1 502 502 241 241 . E 2 GW9 B 1 501 501 GW9 GW9 . F 3 241 B 1 502 502 241 241 . G 4 HOH A 1 601 601 HOH HOH . G 4 HOH A 2 602 602 HOH HOH . G 4 HOH A 3 603 603 HOH HOH . G 4 HOH A 4 604 604 HOH HOH . G 4 HOH A 5 605 605 HOH HOH . G 4 HOH A 6 606 606 HOH HOH . G 4 HOH A 7 607 607 HOH HOH . G 4 HOH A 8 608 608 HOH HOH . G 4 HOH A 9 609 609 HOH HOH . G 4 HOH A 10 610 610 HOH HOH . G 4 HOH A 11 611 611 HOH HOH . G 4 HOH A 12 612 612 HOH HOH . G 4 HOH A 13 613 613 HOH HOH . G 4 HOH A 14 614 614 HOH HOH . G 4 HOH A 15 615 615 HOH HOH . G 4 HOH A 16 616 616 HOH HOH . G 4 HOH A 17 617 617 HOH HOH . G 4 HOH A 18 618 618 HOH HOH . G 4 HOH A 19 619 619 HOH HOH . G 4 HOH A 20 620 620 HOH HOH . G 4 HOH A 21 621 621 HOH HOH . G 4 HOH A 22 622 622 HOH HOH . G 4 HOH A 23 623 623 HOH HOH . G 4 HOH A 24 624 624 HOH HOH . G 4 HOH A 25 625 625 HOH HOH . G 4 HOH A 26 626 626 HOH HOH . G 4 HOH A 27 627 627 HOH HOH . G 4 HOH A 28 628 628 HOH HOH . G 4 HOH A 29 629 629 HOH HOH . G 4 HOH A 30 630 630 HOH HOH . G 4 HOH A 31 631 631 HOH HOH . G 4 HOH A 32 632 632 HOH HOH . G 4 HOH A 33 633 633 HOH HOH . G 4 HOH A 34 634 634 HOH HOH . G 4 HOH A 35 635 635 HOH HOH . G 4 HOH A 36 636 636 HOH HOH . G 4 HOH A 37 637 637 HOH HOH . G 4 HOH A 38 638 638 HOH HOH . G 4 HOH A 39 639 639 HOH HOH . G 4 HOH A 40 640 640 HOH HOH . G 4 HOH A 41 641 641 HOH HOH . G 4 HOH A 42 642 642 HOH HOH . G 4 HOH A 43 643 643 HOH HOH . G 4 HOH A 44 644 644 HOH HOH . H 4 HOH B 1 601 601 HOH HOH . H 4 HOH B 2 602 602 HOH HOH . H 4 HOH B 3 603 603 HOH HOH . H 4 HOH B 4 604 604 HOH HOH . H 4 HOH B 5 605 605 HOH HOH . H 4 HOH B 6 606 606 HOH HOH . H 4 HOH B 7 607 607 HOH HOH . H 4 HOH B 8 608 608 HOH HOH . H 4 HOH B 9 609 609 HOH HOH . H 4 HOH B 10 610 610 HOH HOH . H 4 HOH B 11 611 611 HOH HOH . H 4 HOH B 12 612 612 HOH HOH . H 4 HOH B 13 613 613 HOH HOH . H 4 HOH B 14 614 614 HOH HOH . H 4 HOH B 15 615 615 HOH HOH . H 4 HOH B 16 616 616 HOH HOH . H 4 HOH B 17 617 617 HOH HOH . H 4 HOH B 18 618 618 HOH HOH . H 4 HOH B 19 619 619 HOH HOH . H 4 HOH B 20 620 620 HOH HOH . H 4 HOH B 21 621 621 HOH HOH . H 4 HOH B 22 622 622 HOH HOH . H 4 HOH B 23 623 623 HOH HOH . H 4 HOH B 24 624 624 HOH HOH . H 4 HOH B 25 625 625 HOH HOH . H 4 HOH B 26 626 626 HOH HOH . H 4 HOH B 27 627 627 HOH HOH . H 4 HOH B 28 628 628 HOH HOH . H 4 HOH B 29 629 629 HOH HOH . H 4 HOH B 30 630 630 HOH HOH . H 4 HOH B 31 631 631 HOH HOH . H 4 HOH B 32 632 632 HOH HOH . H 4 HOH B 33 633 633 HOH HOH . H 4 HOH B 34 634 634 HOH HOH . H 4 HOH B 35 635 635 HOH HOH . H 4 HOH B 36 636 636 HOH HOH . H 4 HOH B 37 637 637 HOH HOH . H 4 HOH B 38 638 638 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C CAA 241 . . . F 3 31.683 28.617 34.219 1 30 ? CAA 241 502 B 1 HETATM 2 O OAV 241 . . . F 3 31.874 29.999 34.511 1 30 ? OAV 241 502 B 1 HETATM 3 C CBC 241 . . . F 3 32.475 30.376 35.684 1 30 ? CBC 241 502 B 1 HETATM 4 C CAM 241 . . . F 3 32.07 31.538 36.33 1 30 ? CAM 241 502 B 1 HETATM 5 C CAO 241 . . . F 3 32.679 31.92 37.52 1 30 ? CAO 241 502 B 1 HETATM 6 C CAN 241 . . . F 3 33.489 29.596 36.227 1 30 ? CAN 241 502 B 1 HETATM 7 C CAP 241 . . . F 3 34.098 29.978 37.416 1 30 ? CAP 241 502 B 1 HETATM 8 C CBF 241 . . . F 3 33.694 31.14 38.063 1 30 ? CBF 241 502 B 1 HETATM 9 C CAZ 241 . . . F 3 34.351 31.552 39.347 1 30 ? CAZ 241 502 B 1 HETATM 10 O OAE 241 . . . F 3 34.644 30.714 40.184 1 30 ? OAE 241 502 B 1 HETATM 11 N NBK 241 . . . F 3 34.626 32.869 39.58 1 30 ? NBK 241 502 B 1 HETATM 12 C CBB 241 . . . F 3 34.566 33.384 40.817 1 30 ? CBB 241 502 B 1 HETATM 13 C CAB 241 . . . F 3 34.21 32.656 42.086 1 30 ? CAB 241 502 B 1 HETATM 14 C CBI 241 . . . F 3 34.965 33.696 38.585 1 30 ? CBI 241 502 B 1 HETATM 15 C CAR 241 . . . F 3 35.139 33.583 37.214 1 30 ? CAR 241 502 B 1 HETATM 16 C CAQ 241 . . . F 3 35.51 34.716 36.489 1 30 ? CAQ 241 502 B 1 HETATM 17 C CBE 241 . . . F 3 35.71 35.956 37.101 1 30 ? CBE 241 502 B 1 HETATM 18 O OAX 241 . . . F 3 36.075 37.032 36.335 1 30 ? OAX 241 502 B 1 HETATM 19 C CBL 241 . . . F 3 35.138 38.073 36.066 1 30 ? CBL 241 502 B 1 HETATM 20 F FAI 241 . . . F 3 34.126 37.588 35.372 1 30 ? FAI 241 502 B 1 HETATM 21 F FAG 241 . . . F 3 34.693 38.571 37.205 1 30 ? FAG 241 502 B 1 HETATM 22 F FAH 241 . . . F 3 35.73 39.027 35.371 1 30 ? FAH 241 502 B 1 HETATM 23 C CAT 241 . . . F 3 35.548 36.117 38.476 1 30 ? CAT 241 502 B 1 HETATM 24 C CBH 241 . . . F 3 35.179 35.011 39.225 1 30 ? CBH 241 502 B 1 HETATM 25 C CBG 241 . . . F 3 34.924 34.827 40.679 1 30 ? CBG 241 502 B 1 HETATM 26 C CAU 241 . . . F 3 35.009 35.866 41.771 1 30 ? CAU 241 502 B 1 HETATM 27 C CBA 241 . . . F 3 36.388 35.832 42.387 1 30 ? CBA 241 502 B 1 HETATM 28 C CAS 241 . . . F 3 37.277 34.822 42.039 1 30 ? CAS 241 502 B 1 HETATM 29 C CAK 241 . . . F 3 36.768 36.809 43.299 1 30 ? CAK 241 502 B 1 HETATM 30 C CAJ 241 . . . F 3 38.038 36.775 43.864 1 30 ? CAJ 241 502 B 1 HETATM 31 C CAL 241 . . . F 3 38.927 35.764 43.516 1 30 ? CAL 241 502 B 1 HETATM 32 C CBD 241 . . . F 3 38.546 34.787 42.604 1 30 ? CBD 241 502 B 1 HETATM 33 O OAW 241 . . . F 3 39.421 33.791 42.26 1 30 ? OAW 241 502 B 1 HETATM 34 C CBJ 241 . . . F 3 39.367 32.53 42.925 1 30 ? CBJ 241 502 B 1 HETATM 35 C CAC 241 . . . F 3 38.721 32.704 44.294 1 30 ? CAC 241 502 B 1 HETATM 36 C CAY 241 . . . F 3 38.558 31.566 42.108 1 30 ? CAY 241 502 B 1 HETATM 37 O OAD 241 . . . F 3 39.05 31.121 41.049 1 30 ? OAD 241 502 B 1 HETATM 38 O OAF 241 . . . F 3 37.422 31.243 42.519 1 30 ? OAF 241 502 B 1 # _model_server_stats.io_time_ms 10 _model_server_stats.parse_time_ms 12 _model_server_stats.create_model_time_ms 9 _model_server_stats.query_time_ms 340 _model_server_stats.encode_time_ms 17 _model_server_stats.element_count 38 #