data_8ZFQ # _model_server_result.job_id Jk4hCjN0y0H30uKxqklPgg _model_server_result.datetime_utc '2024-11-24 15:54:48' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 8zfq # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"D","auth_seq_id":502}' # _entry.id 8ZFQ # _exptl.entry_id 8ZFQ _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 404.204 _entity.id 3 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description '2-[(2,4-DICHLOROBENZOYL)AMINO]-5-(PYRIMIDIN-2-YLOXY)BENZOIC ACID' _entity.pdbx_number_of_molecules 2 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 102.38 _cell.angle_gamma 90 _cell.entry_id 8ZFQ _cell.length_a 92.637 _cell.length_b 61.775 _cell.length_c 119.133 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? # _symmetry.entry_id 8ZFQ _symmetry.cell_setting ? _symmetry.Int_Tables_number 5 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'C 1 2 1' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # loop_ _pdbx_struct_assembly_gen.asym_id_list _pdbx_struct_assembly_gen.assembly_id _pdbx_struct_assembly_gen.oper_expression A,C,D,G 1 1 B,E,F,H 1 2 # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 2 'crystal symmetry operation' 3_455 x-1/2,y+1/2,z 1 0 0 0 1 0 0 0 1 -46.3185 30.8875 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 3 D N N ? 3 F N N # _struct_conn.conn_type_id covale _struct_conn.details ? _struct_conn.id covale1 _struct_conn.ptnr1_label_asym_id B _struct_conn.ptnr1_label_atom_id SG _struct_conn.ptnr1_label_comp_id CYS _struct_conn.ptnr1_label_seq_id 83 _struct_conn.ptnr1_auth_asym_id B _struct_conn.ptnr1_auth_comp_id CYS _struct_conn.ptnr1_auth_seq_id 285 _struct_conn.ptnr1_symmetry 1_555 _struct_conn.ptnr2_label_asym_id E _struct_conn.ptnr2_label_atom_id C03 _struct_conn.ptnr2_label_comp_id EEY _struct_conn.ptnr2_label_seq_id . _struct_conn.ptnr2_auth_asym_id B _struct_conn.ptnr2_auth_comp_id EEY _struct_conn.ptnr2_auth_seq_id 501 _struct_conn.ptnr2_symmetry 1_555 _struct_conn.pdbx_ptnr1_PDB_ins_code ? _struct_conn.pdbx_ptnr1_label_alt_id ? _struct_conn.pdbx_ptnr1_standard_comp_id ? _struct_conn.pdbx_ptnr2_PDB_ins_code ? _struct_conn.pdbx_ptnr2_label_alt_id ? _struct_conn.pdbx_ptnr3_PDB_ins_code ? _struct_conn.pdbx_ptnr3_label_alt_id ? _struct_conn.pdbx_ptnr3_label_asym_id ? _struct_conn.pdbx_ptnr3_label_atom_id ? _struct_conn.pdbx_ptnr3_label_comp_id ? _struct_conn.pdbx_ptnr3_label_seq_id ? _struct_conn.pdbx_PDB_id ? _struct_conn.pdbx_dist_value 1.904 _struct_conn.pdbx_value_order ? # _chem_comp.formula 'C18 H11 Cl2 N3 O4' _chem_comp.formula_weight 404.204 _chem_comp.id PLB _chem_comp.mon_nstd_flag . _chem_comp.name '2-[(2,4-DICHLOROBENZOYL)AMINO]-5-(PYRIMIDIN-2-YLOXY)BENZOIC ACID' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms '5-(2-PYRIMIDINYLOXY)-2-BENZOYLAMINOBENZOIC ACID' # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag CL20 C16 PLB sing 288 n n C16 C15 PLB doub 289 n y C16 C17 PLB sing 290 n y C15 C14 PLB sing 291 n y C15 H15 PLB sing 292 n n C14 CL19 PLB sing 293 n n C14 C13 PLB doub 294 n y C17 C18 PLB doub 295 n y C17 H17 PLB sing 296 n n C18 C13 PLB sing 297 n y C18 H18 PLB sing 298 n n C13 C11 PLB sing 299 n n C11 O12 PLB doub 300 n n C11 N10 PLB sing 301 n n N10 C2 PLB sing 302 n n N10 H10 PLB sing 303 n n C2 C3 PLB sing 304 n y C2 C1 PLB doub 305 n y C3 C4 PLB doub 306 n y C3 H3 PLB sing 307 n n C4 C5 PLB sing 308 n y C4 H4 PLB sing 309 n n C5 C6 PLB doub 310 n y C5 O21 PLB sing 311 n n C6 C1 PLB sing 312 n y C6 H6 PLB sing 313 n n C1 C7 PLB sing 314 n n C7 O9 PLB doub 315 n n C7 O8 PLB sing 316 n n O8 HO8 PLB sing 317 n n O21 C22 PLB sing 318 n n C22 N27 PLB sing 319 n y C22 N23 PLB doub 320 n y N27 C26 PLB doub 321 n y C26 C25 PLB sing 322 n y C26 H26 PLB sing 323 n n C25 C24 PLB doub 324 n y C25 H25 PLB sing 325 n n C24 N23 PLB sing 326 n y C24 H24 PLB sing 327 n n # _atom_sites.entry_id 8ZFQ _atom_sites.fract_transf_matrix[1][1] 0.010795 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0.00237 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.016188 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.008594 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 2 EEY A 1 501 501 EEY LIG . D 3 PLB A 1 502 502 PLB PLB . E 2 EEY B 1 501 501 EEY LIG . F 3 PLB B 1 502 502 PLB PLB . G 4 HOH A 1 601 32 HOH HOH . G 4 HOH A 2 602 35 HOH HOH . G 4 HOH A 3 603 2 HOH HOH . G 4 HOH A 4 604 31 HOH HOH . G 4 HOH A 5 605 7 HOH HOH . G 4 HOH A 6 606 12 HOH HOH . G 4 HOH A 7 607 34 HOH HOH . G 4 HOH A 8 608 15 HOH HOH . G 4 HOH A 9 609 39 HOH HOH . G 4 HOH A 10 610 5 HOH HOH . G 4 HOH A 11 611 6 HOH HOH . G 4 HOH A 12 612 13 HOH HOH . G 4 HOH A 13 613 8 HOH HOH . G 4 HOH A 14 614 23 HOH HOH . G 4 HOH A 15 615 20 HOH HOH . G 4 HOH A 16 616 18 HOH HOH . G 4 HOH A 17 617 26 HOH HOH . G 4 HOH A 18 618 30 HOH HOH . G 4 HOH A 19 619 29 HOH HOH . G 4 HOH A 20 620 36 HOH HOH . H 4 HOH B 1 601 9 HOH HOH . H 4 HOH B 2 602 41 HOH HOH . H 4 HOH B 3 603 21 HOH HOH . H 4 HOH B 4 604 40 HOH HOH . H 4 HOH B 5 605 25 HOH HOH . H 4 HOH B 6 606 33 HOH HOH . H 4 HOH B 7 607 16 HOH HOH . H 4 HOH B 8 608 1 HOH HOH . H 4 HOH B 9 609 27 HOH HOH . H 4 HOH B 10 610 28 HOH HOH . H 4 HOH B 11 611 19 HOH HOH . H 4 HOH B 12 612 14 HOH HOH . H 4 HOH B 13 613 3 HOH HOH . H 4 HOH B 14 614 24 HOH HOH . H 4 HOH B 15 615 22 HOH HOH . H 4 HOH B 16 616 4 HOH HOH . H 4 HOH B 17 617 37 HOH HOH . H 4 HOH B 18 618 38 HOH HOH . H 4 HOH B 19 619 10 HOH HOH . H 4 HOH B 20 620 42 HOH HOH . H 4 HOH B 21 621 43 HOH HOH . H 4 HOH B 22 622 17 HOH HOH . H 4 HOH B 23 623 11 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 CL CL20 PLB . . . D 3 20.463 58.337 10.994 1 82.67 ? CL20 PLB 502 A 1 HETATM 2 C C16 PLB . . . D 3 19.74 59.91 10.562 1 68.86 ? C16 PLB 502 A 1 HETATM 3 C C15 PLB . . . D 3 20.589 60.978 10.429 1 78.23 ? C15 PLB 502 A 1 HETATM 4 C C14 PLB . . . D 3 20.123 62.232 10.118 1 77.55 ? C14 PLB 502 A 1 HETATM 5 CL CL19 PLB . . . D 3 21.34 63.54 9.995 1 92.37 ? CL19 PLB 502 A 1 HETATM 6 C C17 PLB . . . D 3 18.38 60.099 10.369 1 71.58 ? C17 PLB 502 A 1 HETATM 7 C C18 PLB . . . D 3 17.882 61.361 10.055 1 69.37 ? C18 PLB 502 A 1 HETATM 8 C C13 PLB . . . D 3 18.758 62.43 9.943 1 70.5 ? C13 PLB 502 A 1 HETATM 9 C C11 PLB . . . D 3 18.249 63.813 9.562 1 70.19 ? C11 PLB 502 A 1 HETATM 10 O O12 PLB . . . D 3 19.005 64.479 8.941 1 69.26 ? O12 PLB 502 A 1 HETATM 11 N N10 PLB . . . D 3 16.906 64.289 9.896 1 67.61 ? N10 PLB 502 A 1 HETATM 12 C C2 PLB . . . D 3 16.502 65.62 9.456 1 61.47 ? C2 PLB 502 A 1 HETATM 13 C C3 PLB . . . D 3 17.489 66.548 9.202 1 67.81 ? C3 PLB 502 A 1 HETATM 14 C C4 PLB . . . D 3 17.211 67.809 8.765 1 76.17 ? C4 PLB 502 A 1 HETATM 15 C C5 PLB . . . D 3 15.902 68.175 8.578 1 75.04 ? C5 PLB 502 A 1 HETATM 16 C C6 PLB . . . D 3 14.868 67.27 8.822 1 67.93 ? C6 PLB 502 A 1 HETATM 17 C C1 PLB . . . D 3 15.172 65.977 9.262 1 60.37 ? C1 PLB 502 A 1 HETATM 18 C C7 PLB . . . D 3 14.049 64.971 9.535 1 62.7 ? C7 PLB 502 A 1 HETATM 19 O O9 PLB . . . D 3 12.853 65.371 9.639 1 59.79 ? O9 PLB 502 A 1 HETATM 20 O O8 PLB . . . D 3 14.302 63.735 9.661 1 65.83 ? O8 PLB 502 A 1 HETATM 21 O O21 PLB . . . D 3 15.702 69.478 8.129 1 83.81 ? O21 PLB 502 A 1 HETATM 22 C C22 PLB . . . D 3 16.75 69.828 7.231 1 90.65 ? C22 PLB 502 A 1 HETATM 23 N N27 PLB . . . D 3 16.95 69.128 6.078 1 84.38 ? N27 PLB 502 A 1 HETATM 24 C C26 PLB . . . D 3 17.919 69.465 5.245 1 85.84 ? C26 PLB 502 A 1 HETATM 25 C C25 PLB . . . D 3 18.727 70.519 5.515 1 85.3 ? C25 PLB 502 A 1 HETATM 26 C C24 PLB . . . D 3 18.543 71.223 6.656 1 91.6 ? C24 PLB 502 A 1 HETATM 27 N N23 PLB . . . D 3 17.571 70.883 7.498 1 94.37 ? N23 PLB 502 A 1 # _model_server_stats.io_time_ms 0 _model_server_stats.parse_time_ms 31 _model_server_stats.create_model_time_ms 12 _model_server_stats.query_time_ms 728 _model_server_stats.encode_time_ms 3 _model_server_stats.element_count 27 #